mRNA_Ecto-sp6_S_contig93.18489.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig93.18489.1 vs. uniprot
Match: D7FIG1_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG1_ECTSI) HSP 1 Score: 1902 bits (4927), Expect = 0.000e+0 Identity = 999/1063 (93.98%), Postives = 1010/1063 (95.01%), Query Frame = 1
Query: 1 MLYLTLEDDPFPDQEYDEEALLELVRSVARRDGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGHPLEPDLDGDKPVEDFLEYAKTPHLELLHDSGGDVAATTRGGGRKDGRAELLVIGRQDWISTLQTCR-HFINTTDKYDASKEPDPLKSKARLAFNFPAKGRAGDQLEIAIKYLTERVAFCADLPLEQVAAMAAAIELRGLTVPGRRVGIFSHVFRRGRECFGEAYIMFTGTADQIGGDKSGDRLITEGDLFGDEYFSVAVKDVLGIPFRTATVMTRTAPCELLVVPARECCRLRAFVALRNSAKAMAIFDKFFINLPRGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKQLHQKPGKGNEEEEAQRYGPGDIVGWPYLMPGPPARGRSPIVARTAASTKTPQKTAISGGADDRPNTPPEGNQQERKRRSRRNAKEWHCSITVTTPAQVLSVPLAALLSFLSERAMKGLRRYIAHTHKEKLEGPSSSSHSGGLGDEESLDGESELGGFFSGHGGYDRNAPTLFSGGRTWKDRRKTGRMYPPVARLRPSTAPELIALKTAIPSEECENRRPNTTALPGGVHALIEGISSRNNWPRXXXXXXXXXXXRVGLTDSIADRISTAPQGTHNLRRSLQSAPSSSSSPPPVIWGYARVAERGIGGHGDEAEARVGRCSCPMESCRVCSPLDRLERLRNTTIWTPSLPSRSTKPASAPSAVAPRFTSGCTMRNTGTIAQMKATTDTPGNTLSVELKASTFRPATTPYVHHAGKAHVAHPTGGIAARDEAFSGKPTLWGGWGLPSSKSGGTGSVAVAKGSDGAHGGASTSVKKLAGGAHVGFHDRRTTPAGQGGAVIAVADGPATAAVAPMSDFGVTNTSLGRGARREPDSGSEMSLPPAAATLPPDQPHLARLSYTLVQLSTRAALDPHEPSANLCLRILGSFACEKEATTRVSNLYRSILPPSSVSTAKYTSQSRLRAEKCV*VEWSPIP 3186
MLYLTLEDDPFPDQEYDEEALLELVRSVARRDGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFG PLEPDLDGDKPVEDFLEYAKTPHLELLHDSGGDVA TTRGGGRKDGRAELLVIGRQDWISTLQTCR F NTTDKYDASKEPD LKSKARLAFNFPAKGRAGDQLEIAIKYLTERVAFCADLPLEQVAAMAAAIELRGLTVPGR HVFRRGRECFGEAYIMFTGTADQIGGDKSGDRLITEGDLFGDEYFSVAVKDVLGIPFRTATVMTRTAPCELLVVPAREC RLRAFVALRNS KAMAIFDKFFINLPRGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKQLHQ+PGKG+EEEEAQRYGPGDIVGWPYLMP PPARGRSPIVARTAA T TPQKTAI G A+D+PNTPPEGN+QERKRRSRRNAKEWHCSITVTTPAQVLSVPLAALLSFLSERAMKGLRRYIAHTHK+KLEGPSSSSHSGGLGDEESLDGESELG FFSGHGGYDRNAPTLFSGG TWKD+RKTGRM PPVARLRPSTAPELIALKTAI SEECE+RRPN T LPGGVHALIEGISSR+NWPRXXXXXXXXXXXRVGLTDSIADRISTAPQG HNLRRSLQSAPSSSSS PPVIWGYARVAERGIGGHGDEAEAR GRCSCPMESCRVCSPLDRLERLRNTTIWTPSLPSRSTKPASAPSAVA F SGCT RN GTIAQMKATTDTPGNTLSVELKASTFRPAT PYVHHAGKAHVAHPTGGIAA DEAF GKPTLWGGWGLPSSK GGTG AVAKGSDGAHGG STS KLAGGAHVGFHDRRT+PAGQGGAVIAVAD PATAAVAPMSDFGVTNTSLGRGARREPDSGSEMSLPPAAATLPPDQPHLARLSYTLVQLSTRAALDPHEP ANLCLRILGSFACEKEATTRVSNLYRSILPPSSVSTAK+TSQSRLRAE P P
Sbjct: 1 MLYLTLEDDPFPDQEYDEEALLELVRSVARRDGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGQPLEPDLDGDKPVEDFLEYAKTPHLELLHDSGGDVATTTRGGGRKDGRAELLVIGRQDWISTLQTCRSQFTNTTDKYDASKEPDHLKSKARLAFNFPAKGRAGDQLEIAIKYLTERVAFCADLPLEQVAAMAAAIELRGLTVPGR------HVFRRGRECFGEAYIMFTGTADQIGGDKSGDRLITEGDLFGDEYFSVAVKDVLGIPFRTATVMTRTAPCELLVVPARECRRLRAFVALRNSEKAMAIFDKFFINLPRGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKQLHQQPGKGHEEEEAQRYGPGDIVGWPYLMPRPPARGRSPIVARTAAITTTPQKTAIGGSAEDKPNTPPEGNEQERKRRSRRNAKEWHCSITVTTPAQVLSVPLAALLSFLSERAMKGLRRYIAHTHKQKLEGPSSSSHSGGLGDEESLDGESELGEFFSGHGGYDRNAPTLFSGGGTWKDQRKTGRMSPPVARLRPSTAPELIALKTAIQSEECESRRPNITVLPGGVHALIEGISSRDNWPRXXXXXXXXXXXRVGLTDSIADRISTAPQGIHNLRRSLQSAPSSSSSSPPVIWGYARVAERGIGGHGDEAEARGGRCSCPMESCRVCSPLDRLERLRNTTIWTPSLPSRSTKPASAPSAVARSFASGCTTRNIGTIAQMKATTDTPGNTLSVELKASTFRPATRPYVHHAGKAHVAHPTGGIAAGDEAFGGKPTLWGGWGLPSSKIGGTGHGAVAKGSDGAHGGTSTSGNKLAGGAHVGFHDRRTSPAGQGGAVIAVADAPATAAVAPMSDFGVTNTSLGRGARREPDSGSEMSLPPAAATLPPDQPHLARLSYTLVQLSTRAALDPHEPLANLCLRILGSFACEKEATTRVSNLYRSILPPSSVSTAKHTSQSRLRAENVSKSSGRPSP 1057
BLAST of mRNA_Ecto-sp6_S_contig93.18489.1 vs. uniprot
Match: A0A6H5L5Z7_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z7_9PHAE) HSP 1 Score: 1397 bits (3617), Expect = 0.000e+0 Identity = 781/1057 (73.89%), Postives = 814/1057 (77.01%), Query Frame = 1
Query: 94 DGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHELVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGHPLEPDLDGDKPVEDFLEYAKTPHLELLHDSGGDVAATTRGGGRKDGRAELLVIGRQDWISTLQTCRH---------------------------------FINTTDKYDASKEPDPLKSKARLAFNFPAKGRAGDQLEIAIKYLTERVAFCADLPLEQVAAMAAAIELR--GLTVPGRRVGIFSHVFRRGRECFGEAYIMFTGTADQIGGDKSGDRLITEGDLFGDEYFSVAVKDVLGIPFRTATVMTRTAPCELLVVPARECCRLRAFVALRNSAKAMAIFDKFFINLPRGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKQLHQKPGKGNEEEEAQRYGPGDIVGWPY----LMPGPPARGRSPIVARTAASTKTPQKTAISGGADDRPNTPPEGNQQERKRRSRRNAKEWHCSITVTTPAQVLSVPLAALLSFLSERAMKGLRRYIAHTHKEKLEGPSSSSHSGGLGDEESLDGESELGGFFSGHGGYDRNAPTLFSGGRTWKDRRKTGRMYPPVARLRPSTAPELIALKTAIPSEECENRRPNTTALPGGVHALIEGISSRNNWPRXXXXXXXXXXXRVGLTDSIADRISTAPQGTHNLRRSLQSAPSSSSSPP-PVIWGYARVAERGIGGHGDEAEARVGRCSCPMESCRVCSPLDRLERLRNTTIWTPSLPSRSTKPASAPSAVAPRFTSGCTMRNTGTIAQMKATTDTPGNTLSVELKASTFRPATTPYVHHAGKAHVAHPTGGIAARDEAFSGKPTLWGGWGLPSSKSGGTGSVAVAKGSDGAHGGASTSVKKLAGGAHVGFHDRRTTPAGQGGAVIAVADGPATAAVAPMSDFGVTNTSLGRGARREPDSGSEMSLPPAAATLPPDQPHLARLSYTLVQLSTRAALDPHEPSANLCLRILGSFACEKEATTRVSNLYRSILPPSSVSTAKYTSQSRL 3144
DGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHE VRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGHPL+PDLDGDKPVEDFLEYAKTPHLEL HD GGDVAA TRGGGRKDGRAELLVIGRQDW+STL+TCRH F+NTT+KYDA KEPDPLKSKARLAFNFPAKGRAGDQL+IAIKYLTERVAFCADLPLEQ+ A+I L L R HV RE GDLFGDEY SVAVK VLGIPFRTATVMTRTAPCELLVVPAREC RLRAFVALRNS KAMAIFDKFFINLP+GVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKQ H++PG G EEEEAQRYGPGDIVGW + G P R TK P+ +++ RYIA+THK+KL+GPSS SHSGGLGD+ESLDGESELG FFSGHGG DRNAPTLFSGG TWKD+RKTG+M PPV RLR T IP+EECE+RRPNT A P GV AL++GISSR+NWPRXXXXXXXXXXXRVGLTDS AD ISTAPQGTH LRRSLQSAPSS PVIWGYARVA RGI GHGDEAEAR GRCSCPMESCRVC+PLDRLERLRNTTIWTPSLPSRSTKPASAPSAVA F SGCTMRNTGTIAQ KATTDTPGNTLS+ELK ST RP TPYVHHAGKAHV HPTGG AA DEAF GK TLWGGWGLPSSK GGTG+ VAKG DGAHGG STS KLA GAHVGFHDRRT+PAGQGGAVIAVAD P TAAVAPMSDFGVTNTSLGRG RREPDSGSE+SLPPAAA LPPDQPHLARLSYTLVQLSTRAALDP EPSANLCLRILGSFACEK+ATTRVSNLYRSILPPSSVSTAKYTSQSRL
Sbjct: 17 DGDDRTVSELIRFQDALERLGLLWTPLDSLDKHQAHEFVRNLHLELTAPGDMVYLKHSPAMRSYVVLRGTVLLTNNVLDREGAEGVRVLGAGQEFGHPLDPDLDGDKPVEDFLEYAKTPHLELPHDGGGDVAAKTRGGGRKDGRAELLVIGRQDWVSTLRTCRHVTIVTFGLNTLSSVARLLLGRTFYLHKTISRSQFLNTTEKYDALKEPDPLKSKARLAFNFPAKGRAGDQLKIAIKYLTERVAFCADLPLEQMPTRLASIPLPYDSLDATSR-----FHVLCACRE----------------------------GDLFGDEYLSVAVKHVLGIPFRTATVMTRTAPCELLVVPARECRRLRAFVALRNSEKAMAIFDKFFINLPKGVCSEIASLATFRTIKMNQKLAEDGDEVSTVFFVVRGECVSKSSKQFHRQPGTGKEEEEAQRYGPGDIVGWEQGVQMAVEGVPKR-----------RTKQPRLGSVA--------------------------------------------------------------RYIAYTHKQKLQGPSSLSHSGGLGDDESLDGESELGEFFSGHGGCDRNAPTLFSGGGTWKDQRKTGKMSPPVTRLR-----------TVIPTEECESRRPNTAASPVGVQALLDGISSRDNWPRXXXXXXXXXXXRVGLTDSTADPISTAPQGTHKLRRSLQSAPSSXXXXXXPVIWGYARVAGRGIDGHGDEAEARGGRCSCPMESCRVCTPLDRLERLRNTTIWTPSLPSRSTKPASAPSAVARSFASGCTMRNTGTIAQTKATTDTPGNTLSLELKRSTSRPGLTPYVHHAGKAHVIHPTGGKAAGDEAFGGKSTLWGGWGLPSSKIGGTGNGVVAKGGDGAHGGTSTSGNKLAKGAHVGFHDRRTSPAGQGGAVIAVADAPVTAAVAPMSDFGVTNTSLGRGDRREPDSGSEISLPPAAAILPPDQPHLARLSYTLVQLSTRAALDPSEPSANLCLRILGSFACEKKATTRVSNLYRSILPPSSVSTAKYTSQSRL 956 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig93.18489.1 >prot_Ecto-sp6_S_contig93.18489.1 ID=prot_Ecto-sp6_S_contig93.18489.1|Name=mRNA_Ecto-sp6_S_contig93.18489.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1055bp MLYLTLEDDPFPDQEYDEEALLELVRSVARRDGDDRTVSELIRFQDALERback to top mRNA from alignment at Ecto-sp6_S_contig93:533862..544927- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig93.18489.1 ID=mRNA_Ecto-sp6_S_contig93.18489.1|Name=mRNA_Ecto-sp6_S_contig93.18489.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=11066bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:533862..544927- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:533862..544927- >mRNA_Ecto-sp6_S_contig93.18489.1 ID=mRNA_Ecto-sp6_S_contig93.18489.1|Name=mRNA_Ecto-sp6_S_contig93.18489.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3165bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:533862..544927- (Ectocarpus species6 EcLAC_371)back to top |