mRNA_Ecto-sp6_S_contig93.18462.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI) HSP 1 Score: 425 bits (1093), Expect = 1.970e-145 Identity = 210/216 (97.22%), Postives = 213/216 (98.61%), Query Frame = 1
Query: 367 MLARIRDAIDDLFAKKSGERAWEKGVTEAEVRHLVSMAAGLPDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGIPVANDGLGACVWIALASGALSERCSTGGAALALRTATMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGREWTENISADVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHP 1014
MLARI+DAIDDLFAK+SGERAWEKGVTEAEVRHLVSMAAGL DPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGG+VGIPVANDGLGACVWIALASGALSERCSTGGAALALRTA MRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGREWTENIS DVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHP
Sbjct: 1 MLARIKDAIDDLFAKRSGERAWEKGVTEAEVRHLVSMAAGLLDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGQVGIPVANDGLGACVWIALASGALSERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGREWTENISPDVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHP 216
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE) HSP 1 Score: 341 bits (874), Expect = 1.460e-108 Identity = 167/223 (74.89%), Postives = 188/223 (84.30%), Query Frame = 1
Query: 349 DKRNTEMLARIRDAIDDLFAKKSG-ERAWEKGVTEAEVRHLVSMAAGLPDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGIPVANDGLGACVWIALASGALSERCSTGGAALALRTATMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGREWTENISADVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHP 1014
D RN +LA I D+ID FAK+ G AW+ GV+ EV+ LVS+ A +PDPFAGFK+NPI + D+GCFNLPED D+LASRCLEGAATSDGG VG+PV N+G GAC WIALASGAL+ RCSTGGAALALRT MRMALLK EFLS DGYLAEYRS DLFD KEHDMV+KLAGR W N+SADVAR+YYLCA+R+NCGPFKYSQQAV+PWAAEVLGLKVRVFHP
Sbjct: 2 DDRNKAVLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHP 224
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: D7FV00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV00_ECTSI) HSP 1 Score: 300 bits (769), Expect = 2.160e-97 Identity = 150/168 (89.29%), Postives = 156/168 (92.86%), Query Frame = 1
Query: 364 EMLARIRDAIDDLFAKKSGERAWEKGVTEAEVRHLVSMAAGLPDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGIPVANDGLGACVWIALASGALSERCSTGGAALALRTATMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGRE 867
EM ARIRDAI DLFA++SGERAW KGV EA+VRHLVS AA LP PFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVG+PVAND GACVWIALASG L+ERCSTGG ALALRTA MRMALLKSPEFLSRDGYLAEYRSP+LFDLKEHDMVLKLAGRE
Sbjct: 2 EMFARIRDAIGDLFARRSGERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGACVWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRSPNLFDLKEHDMVLKLAGRE 169
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE) HSP 1 Score: 175 bits (444), Expect = 1.620e-43 Identity = 91/181 (50.28%), Postives = 120/181 (66.30%), Query Frame = 3
Query: 1017 YQSWHTNED-ASISEDKENGIGEGELQALHHAWQASRRLRSEPEENRGAYT-------VEIMSVDTDVWVAVLLVYAVHEWTRNVRIIVRQ*RGFGHPGESVPHVDTLDLFNGITGL-DWPASFTPAQRCLPVVAAYGVGGTDFSPTLHSLTSHSMFNSYFSTLQNPQVHNFVKPLGSVSV 1532
Y+SW+ + D A I E+K+NG+GEGELQALHH +Q + +S G VE++SVDTDVWVA LL YA H WTRNVR++VR+ G + +V VD L+LFN +T L WP++FTP Q+CLPV+AAY + GTDF+PT TS MF SYF ++NP+ H F+K LG +V
Sbjct: 447 YKSWYNDVDGAEIPEEKDNGLGEGELQALHHVYQVCLQQQSREGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTRNVRVVVRKQSGL-YDQAAVTCVDVLELFNALTRLTSWPSAFTPLQKCLPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAV 626
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE) HSP 1 Score: 175 bits (444), Expect = 2.480e-43 Identity = 91/181 (50.28%), Postives = 120/181 (66.30%), Query Frame = 3
Query: 1017 YQSWHTNED-ASISEDKENGIGEGELQALHHAWQASRRLRSEPEENRGAYT-------VEIMSVDTDVWVAVLLVYAVHEWTRNVRIIVRQ*RGFGHPGESVPHVDTLDLFNGITGL-DWPASFTPAQRCLPVVAAYGVGGTDFSPTLHSLTSHSMFNSYFSTLQNPQVHNFVKPLGSVSV 1532
Y+SW+ + D A I E+K+NG+GEGELQALHH +Q + +S G VE++SVDTDVWVA LL YA H WTRNVR++VR+ G + +V VD L+LFN +T L WP++FTP Q+CLPV+AAY + GTDF+PT TS MF SYF ++NP+ H F+K LG +V
Sbjct: 941 YKSWYNDVDGAEIPEEKDNGLGEGELQALHHVYQVCLQQQSREGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTRNVRVVVRKQSGL-YDQAAVTCVDVLELFNALTRLTSWPSAFTPLQKCLPVIAAYMLCGTDFTPTFFGFTSFFMFQSYFEYVKNPENHRFLKALGEHAV 1120
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE) HSP 1 Score: 147 bits (370), Expect = 3.090e-34 Identity = 82/185 (44.32%), Postives = 113/185 (61.08%), Query Frame = 3
Query: 1017 YQSWHTNEDASISEDKENGIGEGELQALHHAWQASRRLRSEPEENRGAYT--------------VEIMSVDTDVWVAVLLVYAVHEWTRNVRIIVRQ*RGFGHPGESVPH-VDTLDLFNGITGLD-WPASFTPAQRCLPVVAAYGVGGTDFSPTLHSLTSHSMFNSYFSTLQNPQVHNFVKPLGS 1523
++SWH ++D+ I D+ NGIGEGELQALHHA+ R E G+ + VE++S+ DVWVA LL YA++ R VR++VRQ G E+V + +D L+LF + ++ WP SFT QRCLPV+A+Y + GTDF+PTL L+S MF SYF +N + H FVK LG+
Sbjct: 224 FKSWHNDKDSLIIGDEGNGIGEGELQALHHAYLVGRTAGPLTGEGGGSSSENNQEGQGETPPVRVEVVSIHRDVWVAALLAYALYPHIRIVRVVVRQQSGLND--EAVVNCIDVLELFEALAKMENWPHSFTGLQRCLPVIASYMLNGTDFTPTLSGLSSFFMFQSYFELAKNAENHQFVKALGT 406
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: D8LEN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN6_ECTSI) HSP 1 Score: 130 bits (327), Expect = 5.220e-33 Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1
Query: 1249 ASSCGSSGGLGTRVSLFLTLIRWTFSTALRDWTGRLVSHRPNGAYRWLPPTAWVVPTFRPLCTR 1440
ASS GSSGGLG RV+LFLT+IRW FSTALRDWTGRLVSHRPNGAYRWLPPTAWVVPTFRPLCTR
Sbjct: 30 ASSWGSSGGLGARVNLFLTMIRWIFSTALRDWTGRLVSHRPNGAYRWLPPTAWVVPTFRPLCTR 93
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: A0A6H5KUA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA8_9PHAE) HSP 1 Score: 123 bits (308), Expect = 7.370e-30 Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 3
Query: 1167 VEIMSVDTDVWVAVLLVYAVHEWTRNVRIIVRQ*RGFGHPGESVPHVDTLDLFNGITGL-DWPASFTPAQRCLPVVAAYGVGGTDFSPTLHSLTSHSMFNSYFSTLQNPQVHNFVKPLGS 1523
VE+ SVDTDVW+A LL YAVH TR+VRIIVRQ G +V +D L LF +T + +WP+SFT Q LP+++AY + GTD++PTL LT+ SMF +Y+ L++ HNFV PLGS
Sbjct: 10 VEVFSVDTDVWIAALLSYAVHPSTRDVRIIVRQQSGMA-VNTNVHCIDLLKLFQDLTAMRNWPSSFTKLQSVLPIISAYVLNGTDYTPTLSGLTASSMFQAYYDALKDAGNHNFVLPLGS 128
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.700e-29 Identity = 83/188 (44.15%), Postives = 112/188 (59.57%), Query Frame = 3
Query: 1017 YQSWHTNEDASISEDKENGIGEGELQALHHAWQASRRLRSEPEENRGA-----------------YTVEIMSVDTDVWVAVLLVYAVHEWTRNVRIIVRQ*RGFGHPGES-VPHVDTLDLFNGITGLD-WPASFTPAQRCLPVVAAYGVGGTDFSPTLHSLTSHSMFNSYFSTLQNPQVHNFVKPLGS 1523
Y SW+ ++ I + NGIGEGELQALHHA+ + + E+RG TVE++SVDTDVW+A LL YAVH TR+VRIIVRQ G G + V +D L L ++ + WP+SFT QR L +V+A+ + GTDF+P+L T+ SMF +Y + L++ HNFV PLGS
Sbjct: 838 YLSWYNTKELDIILLEANGIGEGELQALHHAYMTGKNNK----ESRGQGGEVREGGVVVPTSEDPVTVEVVSVDTDVWMAALLAYAVHPSTRDVRIIVRQQSGV--TGNTYVNCIDVLKLLQDLSAMRFWPSSFTNLQRVLSIVSAFVLNGTDFTPSLSGFTASSMFQAY-NALKDAGNHNFVLPLGS 1018
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Match: A0A6H5KC27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC27_9PHAE) HSP 1 Score: 111 bits (277), Expect = 3.320e-25 Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = 3
Query: 1167 VEIMSVDTDVWVAVLLVYAVHEWTRNVRIIVRQ*RGFGHPGESVPH-VDTLDLFNGITGL-DWPASFTPAQRCLPVVAAYGVGGTDFSPTLHSLTSHSMFNSYFSTLQNPQ 1493
VE+ SVDTDVW+A LL YAVH TR+VRIIVRQ G G + H +D L L +T + +WP+SFT QR LP++ AY + GTDF+PTL+ LT+ SMF +Y+ L++ Q
Sbjct: 32 VEVFSVDTDVWIAALLAYAVHPSTRDVRIIVRQQSGV--TGNTHAHGIDVLKLLQDLTAMRNWPSSFTNLQRVLPIIFAYVLNGTDFTPTLNGLTTSSMFQAYYDALKDGQ 140 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig93.18462.1 >prot_Ecto-sp6_S_contig93.18462.1 ID=prot_Ecto-sp6_S_contig93.18462.1|Name=mRNA_Ecto-sp6_S_contig93.18462.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=311bp MRGGNCGKNAKQGCSVEGPHKSTVDDVSEKAADKRNTEMLARIRDAIDDLback to top mRNA from alignment at Ecto-sp6_S_contig93:179295..182198+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig93.18462.1 ID=mRNA_Ecto-sp6_S_contig93.18462.1|Name=mRNA_Ecto-sp6_S_contig93.18462.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2904bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:179295..182198+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:179295..182198+ >mRNA_Ecto-sp6_S_contig93.18462.1 ID=mRNA_Ecto-sp6_S_contig93.18462.1|Name=mRNA_Ecto-sp6_S_contig93.18462.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:179295..182198+ (Ectocarpus species6 EcLAC_371)back to top |