mRNA_Ecto-sp6_S_contig93.18456.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig93.18456.1 vs. uniprot
Match: D7G9G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G4_ECTSI) HSP 1 Score: 422 bits (1085), Expect = 4.570e-145 Identity = 222/239 (92.89%), Postives = 223/239 (93.31%), Query Frame = 1
Query: 1 MLADMDSRAGFLRTAAAAAIGGAALVVCGESQPSSAAEVAATEFVDFEDSRGLFSCRIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKTFDLLTDAGLPTIGDLTKWENVGKPAVIADLLKQRRDSDAAGGTPVESVVLPGVTQDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWVQEGGAKDRLKVATDSFRLEGLIVEGVRLGAV 717
MLADMDSRAGFLRTAAA SQPSSAAEVAATEFVDFEDSRGLFSCRIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKTFDLLTDAGLPTIGDLTKWENVGKPA IADLLKQRRDSDAAGGTPVESVVLPGVT DGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDW QEGGAKDRLKVATDSFRLEGLIV+GVRLGAV
Sbjct: 1 MLADMDSRAGFLRTAAAXXXXXXXXXXXXXSQPSSAAEVAATEFVDFEDSRGLFSCRIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKTFDLLTDAGLPTIGDLTKWENVGKPAAIADLLKQRRDSDAAGGTPVESVVLPGVTLDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWDQEGGAKDRLKVATDSFRLEGLIVDGVRLGAV 239
BLAST of mRNA_Ecto-sp6_S_contig93.18456.1 vs. uniprot
Match: A0A6H5KHB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB6_9PHAE) HSP 1 Score: 412 bits (1059), Expect = 3.960e-140 Identity = 217/239 (90.79%), Postives = 218/239 (91.21%), Query Frame = 1
Query: 1 MLADMDSRAGFLRTAAAAAIGGAALVVCGESQPSSAAEVAATEFVDFEDSRGLFSCRIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKTFDLLTDAGLPTIGDLTKWENVGKPAVIADLLKQRRDSDAAGGTPVESVVLPGVTQDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWVQEGGAKDRLKVATDSFRLEGLIVEGVRLGAV 717
MLADMDSRAGFLRTAA PSSAAEVAATEFVDFEDSRGLFSC IPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVK FDLLTDAGLPT+GDLTKWENVGKPA IADLLKQRRDSDAAGGTPVESVVLPGVT DGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDW QEGGAKDRLKVATDSFRLEGLIVEGVRLGAV
Sbjct: 65 MLADMDSRAGFLRTAAXXXXXXXXXXXXXXXXPSSAAEVAATEFVDFEDSRGLFSCLIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKAFDLLTDAGLPTVGDLTKWENVGKPAAIADLLKQRRDSDAAGGTPVESVVLPGVTLDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWDQEGGAKDRLKVATDSFRLEGLIVEGVRLGAV 303
BLAST of mRNA_Ecto-sp6_S_contig93.18456.1 vs. uniprot
Match: A0A835Z4Q3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Q3_9STRA) HSP 1 Score: 173 bits (439), Expect = 5.700e-48 Identity = 98/188 (52.13%), Postives = 121/188 (64.36%), Query Frame = 1
Query: 139 FEDSRGLFSCRIPKNFLRAERAKDK--RGTVFVAGDYSKAEVLSVQVVKTFDLLTDAG-----LPTIGDLTKWENVGKPAVIADLLKQRRDSDAAGGTPVESVVLPG-VTQDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRGDGSFLVVWAGALNTDWVQEGGAKDRLKVATDSFRL 678
+ DSRG F +P N++RAER D+ +G +FV G+Y KA LSV ++K+ LL DAG LPT DLT W VG P IA LL RRD DAA +S VLP V DG+ L FM+K+ + V R DLLEKE+GV ELYR TY KA+MRGDG+FL+ WAGALNT+W + A+D L SF L
Sbjct: 42 YSDSRGYFEISLPANWVRAERKGDQEAKGVLFVTGNYVKAITLSVAIIKSSQLLRDAGTAPLVLPT-DDLTTWAGVGTPMGIAKLLAFRRDQDAAQAAAQDSEVLPDTVVLDGNALTFMIKTRVPVQRPDLLEKERGVRELYRLTYGKALMRGDGTFLLCWAGALNTEWGEPTNARDTLAAVVASFHL 228
BLAST of mRNA_Ecto-sp6_S_contig93.18456.1 vs. uniprot
Match: K0RXZ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXZ5_THAOC) HSP 1 Score: 112 bits (280), Expect = 1.460e-24 Identity = 83/230 (36.09%), Postives = 119/230 (51.74%), Query Frame = 1
Query: 37 RTAAAAAIGGAALVVCGESQPSSAAEVAATEFVDFEDSRGLFSCRIPKNFLRAERA-----------KDKRG-TVFVAGDYSKAEVLSVQVVKTFDLLTDAGLPTIGDLTKWENVGKPAVIADLLKQRRDSDAAGGTPV-----ESVVLPGVTQDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMRG-DGSFLVVWAGALNTDWVQEGGAKDRLKVATDSF 672
R A+ + A V ++ A +V FVD + LF+ +P+ F R+ K +RG T+F AGD SKAEV++V+ LL + G +GDL+ +E +G P IA LL +RR+ D G V +SVV VT+DG L+F +K I V + +LL +E GVS L+R T KA + DG+ LVV+A AL+ D+ G L+ DSF
Sbjct: 45 RAMVASTLSAAVSVAASKALAEEATDVPMKLFVDTANP-SLFAINVPQRFFAIRRSAKGDLPDEKTGKGRRGGTIFSAGDMSKAEVVAVERFPVKVLLEEEGYSPLGDLSTFEAIGDPTAIATLLLRRREKDRPGNVSVAVLDKDSVV---VTEDGKTLKFTMKQEISVQKPELLMEEMGVSRLFRTTVAKATLSSNDGNLLVVFASALDQDFSGPDGVA--LRKTVDSF 268
BLAST of mRNA_Ecto-sp6_S_contig93.18456.1 vs. uniprot
Match: A0A7S2MYB7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MYB7_9EUKA) HSP 1 Score: 76.3 bits (186), Expect = 4.550e-12 Identity = 59/197 (29.95%), Postives = 96/197 (48.73%), Query Frame = 1
Query: 145 DSRGLFSCRIPKNFLRAERAKDKRGTVFVAGDYSKAEVLSVQVVKTFDLLTD-------AGLPTIGDLTK------WENVGKPAVIADLLKQRRDSDAAGGTPVESVVLPGVTQDGDVLQFMLKSPIKVMRADLLEKEQGVSELYRNTYVKAIMR----GDGS----FLVVWAGALNTDWVQEGGAKDRLKVATDSF 672
D+ F+ IP +F+ ++R K GT+FVAG++ +A V+SV LL D GLP + + + ++G +A LL + RD DA+ G ++ L ++ DG L+F + + V D LE+++GV +L R T +++ GDG+ VW AL DW ++ K L+ SF
Sbjct: 46 DAASRFALDIPDDFVVSKR-KAVTGTLFVAGNFPRASVISVTAWPLDALLQDDARSRALPGLPQELVIAEHATPLSFTDIGSAKSVAQLLLRARDRDASSGALQSALTLSQLSSDGSRLEFECATELPVSDPDALEEQRGVRQLIRRTRAASVLGSVPGGDGAPVPALFSVWGSALEQDWDKD--LKAPLEKTVSSF 239 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig93.18456.1 >prot_Ecto-sp6_S_contig93.18456.1 ID=prot_Ecto-sp6_S_contig93.18456.1|Name=mRNA_Ecto-sp6_S_contig93.18456.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=240bp MLADMDSRAGFLRTAAAAAIGGAALVVCGESQPSSAAEVAATEFVDFEDSback to top mRNA from alignment at Ecto-sp6_S_contig93:129163..133084- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig93.18456.1 ID=mRNA_Ecto-sp6_S_contig93.18456.1|Name=mRNA_Ecto-sp6_S_contig93.18456.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3922bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:129163..133084- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:129163..133084- >mRNA_Ecto-sp6_S_contig93.18456.1 ID=mRNA_Ecto-sp6_S_contig93.18456.1|Name=mRNA_Ecto-sp6_S_contig93.18456.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:129163..133084- (Ectocarpus species6 EcLAC_371)back to top |