mRNA_Ecto-sp6_S_contig93.18455.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig93.18455.1
Unique NamemRNA_Ecto-sp6_S_contig93.18455.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig93.18455.1 vs. uniprot
Match: A0A6H5KHB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 5.800e-8
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = -1 
Query:  626 QEGGAKDRLKVATDSFRLEGLIVEGVRLGAV 718
            QEGGAKDRLKVATDSFRLEGLIVEGVRLGAV
Sbjct:  273 QEGGAKDRLKVATDSFRLEGLIVEGVRLGAV 303
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BLAST of mRNA_Ecto-sp6_S_contig93.18455.1 vs. uniprot
Match: D7G9G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G4_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 8.790e-8
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = -1 
Query:  626 QEGGAKDRLKVATDSFRLEGLIVEGVRLGAV 718
            QEGGAKDRLKVATDSFRLEGLIV+GVRLGAV
Sbjct:  209 QEGGAKDRLKVATDSFRLEGLIVDGVRLGAV 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig93.18455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHB6_9PHAE5.800e-8100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9G4_ECTSI8.790e-896.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig93contigEcto-sp6_S_contig93:129163..129880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size718
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350565.1944273-UTR-Ecto-sp6_S_contig93:129162..1292181682350565.1944273-UTR-Ecto-sp6_S_contig93:129162..129218Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig93 129163..129218 +
1682350565.216708-UTR-Ecto-sp6_S_contig93:129641..1298801682350565.216708-UTR-Ecto-sp6_S_contig93:129641..129880Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig93 129642..129880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350565.2052119-CDS-Ecto-sp6_S_contig93:129218..1296411682350565.2052119-CDS-Ecto-sp6_S_contig93:129218..129641Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig93 129219..129641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig93.18455.1prot_Ecto-sp6_S_contig93.18455.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig93 129219..129641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig93.18455.1

>prot_Ecto-sp6_S_contig93.18455.1 ID=prot_Ecto-sp6_S_contig93.18455.1|Name=mRNA_Ecto-sp6_S_contig93.18455.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=141bp
MHTYRRSHQHHVQQTTRNRRVSVCGRQNRPNEGHEYMNTSCMTLRKNTCI
HSHARFHDVDSRSFLDVISAREALRACLVLPVLDGQGRSQALLLRHCFLN
LWHNGPQPTMSFVRDRHVHMYTTPTMLQHKIGCPNGSSLM*
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mRNA from alignment at Ecto-sp6_S_contig93:129163..129880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig93.18455.1 ID=mRNA_Ecto-sp6_S_contig93.18455.1|Name=mRNA_Ecto-sp6_S_contig93.18455.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=718bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:129163..129880+ (Ectocarpus species6 EcLAC_371)
GCCAGAAATTCGTGTTGGGCGTTCTCTTCAATCCTTTCGAGTGAGACGTG
CCTACTATGCATACGTACAGGCGAAGTCATCAACATCACGTTCAACAAAC
AACCCGAAACCGGCGTGTGTCGGTGTGTGGACGACAAAATAGACCGAACG
AAGGCcatgaataCATGAATACCAGCTGCATGACGCTCCGGAAAAACACT
TGCATTCATTCACATGCACGGTTTCACGACGTTGACAGCAGGTCTTTTCT
CGATGTCATTTCGGCACGAGAAGCGCTGCGTGCGTGTCTGGTGCTTCCAG
TCTTAGACGGACAAGGGAGAAGCCAGGCTCTACTCTTGCGGCACTGTTTT
CTGAACCTCTGGCACAACGGCCCTCAACCAACGATGAGCTTCGTGCGTGA
TCGTCATGTGCACATGTATACCACACCCACCATGCTCCAGCACAAGATCG
GTTGCCCAAACGGTTCGTCTCTTATGTAGCCCATCTGCGTTTCTGTCTAC
CTAGCCGCGAGGGTGATGTTAAAAGAATGGAGAGTATGCATACGATTTCT
CCAAACAAGCCGAGAGGAAAACGCTGGTCCAGTCCCCGCTGCGCGCAGCA
CGCAGACCACAAGCTTTGTGCATCACACAGCCCCCAGACGCACGCCTTCA
ACGATGAGGCCCTCCAGTCGGAAGGAGTCAGTGGCCACCTTCAAGCGGTC
CTTAGCGCCCCCTTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig93:129163..129880+

>mRNA_Ecto-sp6_S_contig93.18455.1 ID=mRNA_Ecto-sp6_S_contig93.18455.1|Name=mRNA_Ecto-sp6_S_contig93.18455.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp6_S_contig93:129163..129880+ (Ectocarpus species6 EcLAC_371)
ATGCATACGTACAGGCGAAGTCATCAACATCACGTTCAACAAACAACCCG
AAACCGGCGTGTGTCGGTGTGTGGACGACAAAATAGACCGAACGAAGGCc
atgaataCATGAATACCAGCTGCATGACGCTCCGGAAAAACACTTGCATT
CATTCACATGCACGGTTTCACGACGTTGACAGCAGGTCTTTTCTCGATGT
CATTTCGGCACGAGAAGCGCTGCGTGCGTGTCTGGTGCTTCCAGTCTTAG
ACGGACAAGGGAGAAGCCAGGCTCTACTCTTGCGGCACTGTTTTCTGAAC
CTCTGGCACAACGGCCCTCAACCAACGATGAGCTTCGTGCGTGATCGTCA
TGTGCACATGTATACCACACCCACCATGCTCCAGCACAAGATCGGTTGCC
CAAACGGTTCGTCTCTTATGTAG
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