mRNA_Ecto-sp6_S_contig92.18429.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18429.1
Unique NamemRNA_Ecto-sp6_S_contig92.18429.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: D7FU93_ECTSI (Heat shock protein 40 like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU93_ECTSI)

HSP 1 Score: 1163 bits (3009), Expect = 0.000e+0
Identity = 591/606 (97.52%), Postives = 595/606 (98.18%), Query Frame = 1 
Query:    1 MKMWRLNWIHSTVLCLAILGKIRVASTQDNEIEVTLTRGTTGLGIHLVSESKTGSLPRGAVVDRVVPESAASFVLLKGDILTTVAGVEIRQWALDNINRLLETQVRVKIKLVRAPQLGEIDFGPVEGEGGREESASCYASIEGDVDDLHAFACTPAAFGGDLPAFSVESSALPIVVAQPLDHCKRSGFDASGSALLVSKGGCLPGAKAANAAWNGAEVMILVDGQYPPLPPLPSVAGKRVLPQSSRDTSKLHGIPVVIVSNATGYRMISEVREKGREVLTFAHSGPRPSRPATKPRKQIPVDEAESLPVREHPFNLRSLFRDGEIGIEFGSPGLPKGQTPTTHLAASCELSTLLTGLTRRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVEIEGGGLPVWDGGRGAGTGWSTHSSTNASALLADKTVTGSTIVTCSVEFPEITSERLQGLDSAGAASDE 1818
            M MWRLNWIHSTVLCLAILGKIRVASTQDNEIEVTLTRGTTGLGIHLVSESKTGSL RGAVVDRVVPESAASFVLLKGDILTTVAGVEIRQWALDNINRLLETQVRVKIKLVRAPQLGEI FGP EGEGGR ESASCYASIEGDVDDLHAFACTPAAFG DLPAFS+ESSALPIVVAQPLDHCKRS FDASGSALLVSKGGCLPGAKAANAAWNGAEVMILVDGQYPPLPPLPSVAGKRVLPQSSRDTSKLHGIPVVIVSNATGYRMISEVRE+GREVLTFAHSGP PSRPATKPRKQIPVDEAESL VREHPFNLRSLFRDGEIGIEFGSPGLPKGQTPTTHLA SCELSTLLTGL RRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGS+FPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVEIEGGGLPVWDGGRGAGTGWSTHSSTNASALLADKTVTGSTIVTCSVEFP+ITSERLQGLDSAGAASDE
Sbjct:    1 MNMWRLNWIHSTVLCLAILGKIRVASTQDNEIEVTLTRGTTGLGIHLVSESKTGSLLRGAVVDRVVPESAASFVLLKGDILTTVAGVEIRQWALDNINRLLETQVRVKIKLVRAPQLGEIGFGPEEGEGGRAESASCYASIEGDVDDLHAFACTPAAFGSDLPAFSLESSALPIVVAQPLDHCKRSSFDASGSALLVSKGGCLPGAKAANAAWNGAEVMILVDGQYPPLPPLPSVAGKRVLPQSSRDTSKLHGIPVVIVSNATGYRMISEVRERGREVLTFAHSGPHPSRPATKPRKQIPVDEAESLRVREHPFNLRSLFRDGEIGIEFGSPGLPKGQTPTTHLAVSCELSTLLTGLQRRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSHFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVEIEGGGLPVWDGGRGAGTGWSTHSSTNASALLADKTVTGSTIVTCSVEFPDITSERLQGLDSAGAASDE 606
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: A0A7S2WTT1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 5.180e-30
Identity = 71/205 (34.63%), Postives = 103/205 (50.24%), Query Frame = 1 
Query: 1081 VPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXX-------EPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMR---DGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVEIEGGGLPVWDGGRGAGT 1665
            + F R   CPVC GR A  + +RP               E G   AA     E+    + TCP C G+GE+P+ G+ C +C G R +QE+  LD+ +P GAP+ H++ F  VG+  P R AGDV + +   PH    R   D S L + + ++L EAL G+   +  LNG+ V L+   + +     EI G GLP++      GT
Sbjct:    4 ISFDRRALCPVCKGRAAIPQDLRPCPLCSPKAHRAGKAPELGTKEAAVFVGPEMSLRRKETCPLCQGYGEIPEVGKQCAKCGGSRTVQETKLLDVVVPAGAPEGHKLVFSSVGNEGPLRPAGDVVLTVETHPHPNLTRSTTDPSALELHVNLTLQEALLGYNLTVYTLNGTRVDLSSIAITTDASTREIPGAGLPIFSSENANGT 208
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: A0A5J4N796_9TREM (DnaJ subfamily A member 1 n=2 Tax=Paragonimus TaxID=34503 RepID=A0A5J4N796_9TREM)

HSP 1 Score: 121 bits (304), Expect = 3.160e-26
Identity = 85/270 (31.48%), Postives = 125/270 (46.30%), Query Frame = 1 
Query:  883 PRKQIPVDEAESLPVRE-------HPFNLRSLFRDGEIGIEFGSPGLPKGQT---PTTHLAASCELSTLLTGLTRRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEV-------EIEGGGLPVW 1641
            P+K+   DE     ++E       +P ++  +F        FG  G  +G      T H     +L  L  G TR++   R   C  C GRG  A A++P          G+            Q ++TTC RC G  E+      C+ C G +V++E   +++ I KG  D   I F G G   PG  AGD+ + I+ +PHERF+R   +L   + ++L+EAL GFTR +  L+G T+L     M S  GEV       EIEG G+P +
Sbjct:   58 PKKRQIYDEGGEQAIKEGGTGGFQNPMDIFEMF--------FGGGGRSRGPRRGKDTVH-RLPVKLEELYNGATRKLSITRNNICSKCEGRGGKAGAVQPCKTCRGT---GIETHIRQLGIGFVQQVQTTCSRCRGEREIIDPKDCCKVCDGRKVVREKKVIEVPIDKGMADGESIRFAGDGDREPGLEAGDIIIHIDEQPHERFVRRRMDLIYTMSLTLSEALCGFTRTVDTLDGRTLL-----MTSKPGEVFTNSEYREIEGEGMPKY 310
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: UPI001887BDCE (dnaJ homolog subfamily A member 2-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI001887BDCE)

HSP 1 Score: 117 bits (292), Expect = 4.160e-25
Identity = 76/246 (30.89%), Postives = 110/246 (44.72%), Query Frame = 1 
Query:  937 PFNLRSLFRDGEIGIEFG-------SPGLPKGQT--PTTHLAASCELSTLLTGLTRRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRT--RMISHNGEVEIEGGGLPVW 1641
            PF    +F     G  FG       S G  + Q    T H      L  L  G T ++    TV C  C G G    ++            G           + Q +++TCP CHG GEV     +C+ CKG +V++E  ++++ I KG  D  RI F G G   PG   GDV + +  +PHE F RDG NL M   +SLTEAL GF   ++ L+G  +++      +I       + G G+P++
Sbjct:    7 PFGTEDIFSHIFGGSPFGGMFGMGGSSGRRRRQRGEDTIH-PLKVSLEDLYNGKTVKLEVDHTVICRTCEGVGGRTGSV---ITCQGCRGQGFKVTFKHIGPNMMQQMQSTCPDCHGDGEVINEKDACKSCKGRKVVKEVKYIEVNIDKGMRDNERIVFRGEGDQLPGMEPGDVVIVLQTKPHEVFHRDGCNLYMTHTVSLTEALCGFEMVLKHLDGRDLVIREVPGMVIKPRSIKGVRGEGMPIY 248
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: A0A6G5A0L9_RHIMP (Putative molecular chaperone (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5A0L9_RHIMP)

HSP 1 Score: 113 bits (283), Expect = 1.350e-24
Identity = 54/143 (37.76%), Postives = 82/143 (57.34%), Query Frame = 1 
Query: 1219 VKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRT--RMISHNGEVEIEGGGLPVW 1641
            + Q +++TCP CHG GEV     +C+ CKG +V++E  ++++ I KG  D  RI F G G   PG   GDV + +  +PHE F RDG NL M   +SLTEAL GF   ++ L+G  +++      +I       + G G+P++
Sbjct:   28 MMQQMQSTCPDCHGDGEVINEKDACKSCKGRKVVKEVKYIEVNIDKGMRDNERIVFRGEGDQLPGMEPGDVVIVLQTKPHEVFHRDGCNLYMTHTVSLTEALCGFEMVLKHLDGRDLVIREVPGMVIKPRSIKGVRGEGMPIY 170
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: A0A0L1KNH9_9EUGL (Chaperone DNAJ protein n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KNH9_9EUGL)

HSP 1 Score: 111 bits (278), Expect = 5.130e-23
Identity = 64/210 (30.48%), Postives = 99/210 (47.14%), Query Frame = 1 
Query: 1006 KGQTPTTHLAASCELSTLLTGLTRRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVEIEGGGLP 1635
            KGQT    +A    L  +  G T +V   +   C  C G GA ++A             G+     +      Q ++  CP C G G+  +  + C  CKG  V+     L+L I +GAP+   ++F   G  FP +  GD+   +   PHE F RDG NL+M L I+L EAL+GF +E+  ++G  V++    +  H   + + G G+P
Sbjct:  127 KGQT--VQIAVQIALEDVYNGKTHQVTLKKQKLCKSCRGTGAASKAD--FHVCSTCKGEGIILKQMNLGGMFIQQVQQQCPSCDGRGKTIK--KKCASCKGVGVMSGDHTLELEIERGAPENTTLNFEMEGDQFPDQIPGDLIFVLRTGPHETFTRDGENLKMNLKITLLEALTGFRKEVAHMDGHVVVIESAEITPHGAIITVSGEGMP 330
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: A0A0D0A2W3_9AGAM (Uncharacterized protein n=1 Tax=Pisolithus microcarpus 441 TaxID=765257 RepID=A0A0D0A2W3_9AGAM)

HSP 1 Score: 103 bits (258), Expect = 3.880e-20
Identity = 68/243 (27.98%), Postives = 110/243 (45.27%), Query Frame = 1 
Query:  937 PFNLRSLFRDGEIGIEFGSPGLPKGQTPTTHLAASCELSTLLTGLTRRVPFGRTVPCPVCNGRGA-----PAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQL-LNGSTVLLNRT--RMISHNGEVEIEGGGLPVW 1641
            P  + + F       +F     P+ +   T ++    L  L  G + ++   + + C  CNG GA     P E  R         +  +A + +        + R  CP C G G   +    C+RCKGER ++E    ++ I KG PD +RI   G G   PG   GDV   I    H  F R GS+L M + I+L+EAL GF+R +   L+G  + ++    ++I+    +++ G G+P +
Sbjct:   93 PAEMFAQFFGNANFFDFTGGAPPRRKGENTEISYDVTLEDLYIGKSVKINMEKEIICTTCNGSGARGNAKPKECSRCDSKGWIFTQTQIAPSRYG-------TARMKCPECDGKGSKLREKDRCKRCKGERTVKEKTRQEIFIEKGMPDGYRIVLTGAGDQEPGIPPGDVVFKIKTAQHPSFERSGSDLLMNVKITLSEALLGFSRILLTHLDGRGIHVSSPPGKVINPGQTIKLRGEGMPTF 328
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: A0A2M4CMH1_ANODA (Putative dnaj chaperone n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CMH1_ANODA)

HSP 1 Score: 101 bits (251), Expect = 6.770e-20
Identity = 63/214 (29.44%), Postives = 95/214 (44.39%), Query Frame = 1 
Query: 1018 PTTHLAASCELSTLLTGLTRRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVE-------IEGGGLPV 1638
            P    + S  L  L  G  R++   + + C  C+G G    A+            GV       +  + +     C  C G GE       C+ C G + ++    + + I KG+ D  R   PG G   P  T GDV + I   PH  F R+GSNL +++ I+LTEAL GF + I+ L+G T+++      SH GEV        + G G+P+
Sbjct:   17 PNLIHSLSVTLEELYNGTQRKLALRKNIICDSCDGIGGKKGAVAKCAPCRGT---GVITKVQKVAPGMVEQYEERCRNCRGLGETIDDKDKCKECNGRKTVRSRKIIVIDISKGSRDGMRYVIPGEGDQEPNVTPGDVVIVIEETPHALFKRNGSNLILDMQITLTEALLGFQKPIKTLDGRTIII-----ASHPGEVTKHGAARYVLGEGMPI 222
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BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: A0A0D9QQ95_PLAFR (Uncharacterized protein n=13 Tax=Plasmodium TaxID=5820 RepID=A0A0D9QQ95_PLAFR)

HSP 1 Score: 102 bits (254), Expect = 1.270e-19
Identity = 70/245 (28.57%), Postives = 111/245 (45.31%), Query Frame = 1 
Query:  913 ESLPVREHPFNLRSLFRDGEIGIEFGSPGLPKGQTPTTHLAASCELSTLLTGLTRRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTR--MISHNGEVEIEGGGLPVW 1641
            E L   E P     LF   +  +  G     +G+   + +  + E   L  G T+++   + V C  C G G P +A             G       HS  + Q+   TC  C G G++      C  CKG  V++    +++ IPKGAP++H+I F G     P    G++ V +N +PH+ F R+G +L +   ISL E+L+GF  EI  L+   +L++ T    + H    EI   G+P +
Sbjct:   90 EGLENGEQPTEATDLF---DFILNAGKGKKKRGEDIVSEVKVTLEQ--LYNGATKKLAISKDVICANCEGHGGPKDAKVDCKQCNGR---GTKTYMRYHSSVLHQT-EVTCNGCRGKGKIFNEKDKCANCKGGCVLKTRKIIEVYIPKGAPNKHKIVFNGEADEKPNVITGNLVVILNEKPHQLFRREGVDLFITHKISLYESLTGFVAEITHLDERKILVDCTNSGFVRHGDIREIAEEGMPTY 325
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Match: F0W4P1_9STRA (Uncharacterized protein AlNc14C18G1862 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4P1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.500e-19
Identity = 79/286 (27.62%), Postives = 118/286 (41.26%), Query Frame = 1 
Query:  937 PFNLRSLFRDGEIGIEFGSPGLPKGQTPTTHLAASCELSTLLTGLTRRVPFGRTVPCPVCNGRGAPAEAMRPXXXXXXXXEPGVAAAAHDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTIPKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMELPISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVEIEGGGLPVWDGGRGAGTGWSTHSSTNASALLADKTVTGSTIVTCSVEFPE-ITSERLQGL 1791
            PF++ S F  G        P     + P T +     L     G T +V F R   C  C+G GA  E              GV            Q ++TTC +C G G++  W  +C  C G +V+      D+ I  GAP+     F G G   PG+ AG+++  +   P +   RDG++L M+L I+L EAL GF +  + L+G  V L R  +        I+  G+P+                        D T +G   +   VEFP+ +T E+ +GL
Sbjct:  123 PFDIFSQFFGGGRRRRSDEPS----RGPDTVIPLRVSLKDTYVGKTLQVSFRRETLCTHCHGTGAAHE--EDVHQCHACNGRGVVIKHRQVGAGFVQQIQTTCEKCSGKGKI--WTSTCPICGGRKVVMTDLQFDVEIAPGAPEGTVYEFEGYGDELPGQEAGNLQFQLITNP-DPVSRDGNDLWMDLKIALREALVGFEKTFEHLDGHKVTLKRDEVTPPRFVAVIKNEGMPI-----------------------QDSTESGDLHIKIFVEFPDHLTEEQKEGL 376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU93_ECTSI0.000e+097.52Heat shock protein 40 like protein n=2 Tax=Ectocar... [more]
A0A7S2WTT1_9STRA5.180e-3034.63Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A5J4N796_9TREM3.160e-2631.48DnaJ subfamily A member 1 n=2 Tax=Paragonimus TaxI... [more]
UPI001887BDCE4.160e-2530.89dnaJ homolog subfamily A member 2-like n=1 Tax=Rhi... [more]
A0A6G5A0L9_RHIMP1.350e-2437.76Putative molecular chaperone (Fragment) n=1 Tax=Rh... [more]
A0A0L1KNH9_9EUGL5.130e-2330.48Chaperone DNAJ protein n=1 Tax=Perkinsela sp. CCAP... [more]
A0A0D0A2W3_9AGAM3.880e-2027.98Uncharacterized protein n=1 Tax=Pisolithus microca... [more]
A0A2M4CMH1_ANODA6.770e-2029.44Putative dnaj chaperone n=1 Tax=Anopheles darlingi... [more]
A0A0D9QQ95_PLAFR1.270e-1928.57Uncharacterized protein n=13 Tax=Plasmodium TaxID=... [more]
F0W4P1_9STRA1.500e-1927.62Uncharacterized protein AlNc14C18G1862 n=1 Tax=Alb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:490967..496870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1170.2
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FU93
Model size1821
KEGG koko:K03686,ko:K09503
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
Exons9
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0712@2759
Ec32 ortholog descriptionHeat shock protein 40 like protein
Ec32 orthologEc-18_001340.1
Cds size1821
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18429.1prot_Ecto-sp6_S_contig92.18429.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 490967..496870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350563.4786816-CDS-Ecto-sp6_S_contig92:490966..4910791682350563.4786816-CDS-Ecto-sp6_S_contig92:490966..491079Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 490967..491079 +
1682350563.4908743-CDS-Ecto-sp6_S_contig92:492118..4921961682350563.4908743-CDS-Ecto-sp6_S_contig92:492118..492196Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 492119..492196 +
1682350563.509821-CDS-Ecto-sp6_S_contig92:492314..4929921682350563.509821-CDS-Ecto-sp6_S_contig92:492314..492992Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 492315..492992 +
1682350563.5238798-CDS-Ecto-sp6_S_contig92:493300..4934971682350563.5238798-CDS-Ecto-sp6_S_contig92:493300..493497Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 493301..493497 +
1682350563.5346076-CDS-Ecto-sp6_S_contig92:493864..4939641682350563.5346076-CDS-Ecto-sp6_S_contig92:493864..493964Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 493865..493964 +
1682350563.5462325-CDS-Ecto-sp6_S_contig92:494228..4943601682350563.5462325-CDS-Ecto-sp6_S_contig92:494228..494360Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 494229..494360 +
1682350563.557136-CDS-Ecto-sp6_S_contig92:495575..4957111682350563.557136-CDS-Ecto-sp6_S_contig92:495575..495711Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 495576..495711 +
1682350563.5758111-CDS-Ecto-sp6_S_contig92:496203..4963561682350563.5758111-CDS-Ecto-sp6_S_contig92:496203..496356Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 496204..496356 +
1682350563.5883958-CDS-Ecto-sp6_S_contig92:496636..4968701682350563.5883958-CDS-Ecto-sp6_S_contig92:496636..496870Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 496637..496870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18429.1

>prot_Ecto-sp6_S_contig92.18429.1 ID=prot_Ecto-sp6_S_contig92.18429.1|Name=mRNA_Ecto-sp6_S_contig92.18429.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=607bp
MKMWRLNWIHSTVLCLAILGKIRVASTQDNEIEVTLTRGTTGLGIHLVSE
SKTGSLPRGAVVDRVVPESAASFVLLKGDILTTVAGVEIRQWALDNINRL
LETQVRVKIKLVRAPQLGEIDFGPVEGEGGREESASCYASIEGDVDDLHA
FACTPAAFGGDLPAFSVESSALPIVVAQPLDHCKRSGFDASGSALLVSKG
GCLPGAKAANAAWNGAEVMILVDGQYPPLPPLPSVAGKRVLPQSSRDTSK
LHGIPVVIVSNATGYRMISEVREKGREVLTFAHSGPRPSRPATKPRKQIP
VDEAESLPVREHPFNLRSLFRDGEIGIEFGSPGLPKGQTPTTHLAASCEL
STLLTGLTRRVPFGRTVPCPVCNGRGAPAEAMRPCKACSSSGEPGVAAAA
HDHSHEVKQSLRTTCPRCHGFGEVPQWGRSCQRCKGERVIQESGWLDLTI
PKGAPDQHRIHFPGVGSNFPGRTAGDVEVAINIEPHERFMRDGSNLRMEL
PISLTEALSGFTREIQLLNGSTVLLNRTRMISHNGEVEIEGGGLPVWDGG
RGAGTGWSTHSSTNASALLADKTVTGSTIVTCSVEFPEITSERLQGLDSA
GAASDE*
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mRNA from alignment at Ecto-sp6_S_contig92:490967..496870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18429.1 ID=mRNA_Ecto-sp6_S_contig92.18429.1|Name=mRNA_Ecto-sp6_S_contig92.18429.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5904bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:490967..496870+ (Ectocarpus species6 EcLAC_371)
ATGAAGATGTGGCGCTTGAACTGGATCCACAGTACTGTGCTTTGTCTCGC
CATCCTAGGCAAGATCCGCGTTGCAAGCACTCAAGACAACGAGATCGAGG
TAACGTTGACCAGGTGAGAGATCCTGCACACAACTTGGACACCTCCTGCA
GATACATGTACCCGGCAGCTCACCCTCTGGGTGGCACACCTCCTCCCGAA
GACAACTTCATCCACTTAATCAGGACGTAGAGTCGCAGATTTGCAACCGG
GTTGCGCCAAGGACATTCCGTGAAGCCGTTGAAATGGCAGGGGTTTGCGA
AGAAGACGGTCGGGTAAAAGAAGATTGTTGACGACGTCTGTTCCTACATA
CCGCGGGCTACAGTACCAGGTACTGCTGTAGATCACGCACCTTTGTGTTT
CCATAGCGTTCTCAGGCAACGTGGTTGTTCATTCTCGTTCTTTGAGCATC
GCATCCTTCAACGAGATCGCCGAGAGAAGATCACAACGAAATAGAATAAG
AAATGCATACATACCAGCATGAACTTCGGCGCGAATGCAACTTTGCGGCG
GTGCCGTGATTTTGAAAGAGCAGAAACCCTCCCGTAGACTACTGTAGTCT
ACAGTATCCCGGCAAGACTAACATGTACATGTTATTGAATTTGACAGTCA
ACCTTGCGAGATACTCTTTGAATTTCCAGCCGTTCCTTCCGACCGACGCC
AAAAATGGGCATCAACCTCCGTGCGGGTGCTGTGGAGCGGTTCGAAATTT
TGAGCACTTACCTCCTAACTAAGTGTATGTGTGTATGTACAATAGTTGTA
GCGATGTCAGTACGACCATTGCAGGCTGTTCGGCGGCCAAGTTCAAATGA
TATACTCTGTCAAGGGGGGGCGAGGAAAAAGGGTTATTCCGGTCATCCCC
AACGGAAGGTAGACGGTAAATAAAGACGACTGTGTGGTATGCACACAGTA
CTCTACCCCAAGACCGTGGAACACTGCTGTGCACCTTTCGAGACTACAGT
AGACGTTATGTCTGGCCTCTTCGTTTTCTCTCTCATGGGTCTTCATTTGA
CCTTGAAGGGATCCTATTTGTTCCTTCACACCTTCACCTTCAAATGCTTT
TGACGCTTGTGATATCGCACTGTCCACCACCGCCGGTGCTTCGTTTGCAC
AGGGGAACGACTGGACTCGGCATTCACCTGGTCAGCGAGTCGAAAACAGG
ATCACTGCCGAGGGGTGCCGTCGTTGACAGGTACAGTTTTGCATCCACAC
AAGTGTCGCCGTTGCACCACAATACCGCATCCAAGCCGATGCGATCACGG
TGGCCCCGCCCAACCAACTCTGTCAAGTCCCTTCGTCCGCGCACCCAGGG
TGGTACCCGAGAGCGCTGCTTCGTTCGTGCTGCTCAAGGGAGACATTCTC
ACGACGGTAGCTGGTGTGGAGATCCGTCAATGGGCCCTGGACAACATCAA
CCGTCTGCTGGAAACTCAGGTCCGGGTCAAGATCAAGTTAGTGAGGGCAC
CCCAACTCGGCGAGATAGACTTCGGCCCAGTGGAAGGAGAAGGGGGAAGA
GAGGAGAGTGCATCATGCTACGCGAGCATCGAGGGAGATGTCGACGACTT
GCACGCCTTTGCATGTACCCCTGCGGCGTTCGGCGGCGACCTCCCCGCCT
TCTCCGTAGAGAGCTCCGCTCTCCCCATTGTCGTTGCTCAGCCCCTCGAT
CACTGCAAGAGAAGCGGCTTCGACGCTAGTGGATCCGCGCTCTTGGTCTC
AAAGGGGGGGTGCCTGCCAGGCGCAAAGGCCGCCAACGCTGCTTGGAATG
GTGCGGAGGTCATGATCTTGGTGGACGGTCAATACCCCCCGCTTCCACCC
TTGCCGAGTGTCGCTGGCAAGAGGGTTTTGCCCCAAAGTTCGCGCGACAC
CTCGAAGCTCCATGGCATCCCGGTTGTAATCGTCAGCAACGCAACAGGGT
ATCGAATGATCTCCGAAGTGCGAGAGAAGGGCAGGGAGGTGCTGACTTTT
GCTCATTCAGGTCCGCGTCCGTCCAGGTAAGCTGCCGTCCGCCTTGAGGG
TACTAGCAGGGAAAATCGTAAGTCAAGTGGCGGGGTGGTGAATCCTCCCC
CGCCCCCTCCCCGAACCAAAGCTAGGAGATGTTCTCCACGCGGCATGCAG
AGTTTGTTCGTCTGCGAAAAACGTGCACCGCGACTGGTTCGCTGTGGTTG
TGTTGAGAAACGTTGGACACGACCAAAAGCGTTTTGCACCGACCGTGACA
CGTCACAGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTTCCCTCTCGGACAGGCCGGCTACCAAACCT
CGAAAGCAGATACCGGTGGACGAGGCAGAGAGTCTTCCGGTTCGTGAGCA
TCCCTTCAACCTCAGATCTCTGTTCCGGGACGGTGAGATCGGGATCGAGT
TTGGGAGCCCGGGGTTGCCCAAGGGCCAGACACCGACAACCCATCTAGCG
GCGTCGTGCGAGCTATCAACTCTGCTCACAGGTATAGGTTTGCGCGTGTG
TCACTCTCTCTCTCTACTGTTATCATCAACCGCGCTACATAACCCGCTGA
CCTACGAAAACACGTCAGTCTCAGTGTGGTTGAAAACAGAACATGCTTCT
AAATGCCATGATCTGGGACCCCGTGAGGGGGCGTCTCTGTCTTTGTGTGT
CTGGTGACTCGCTGCTGCAGTATCATCCGTCTTGAGTACTCCGTCGTCGC
GTTGACTCGTCGTCGTACGTCAGCCAACCGAAAGAGCCTTTCGCTTACTC
CCGTGGGAGTGCGGTGCCATGGTTCGGTCACCTGCTACTGTACGGGGTGC
TCTTTTCGGAGTGTCTTTATTATCCCGCGCGTTCCCGCTTCCTTCCAGGC
CTTACGAGAAGGGTACCCTTCGGTAGGACGGTTCCCTGCCCGGTGTGCAA
CGGAAGGGGAGCTCCCGCAGAGGCAATGCGCCCGTGTAAAGCATGCAGGT
ACGGTACGCTCGTGAAACCACCAAGTCCTGAAATGGCTCTGTTATCTCCA
GGATGAGGATAGTTATTCGAACTACATATACGGCTTGATCTCTCGTCCGA
AACGAGACACTTACATACCTCGTATCTTGGTCATGGCACGCCATCAGCAC
TCACTTACGGAGAGCACAGAAACAAGTAAGTAAACCGCCGCTGCGCGGGA
CGATACGCCATATACGTGCACTCAACATGCAGAGCCCTGCACCCCCTCTT
GATGCCGGGCAGCTCTTCGGGCGAGCCGGGCGTGGCGGCCGCAGCCCACG
ATCACAGCCACGAGGTGAAGCAATCTCTGAGGACCACTTGCCCGCGCTGC
CATGGGTTCGGAGAAGTCCCACAGTGGGGGCGTTCGTGCCAGCGGTAAGG
GGTAAGAGGGCTCGTCCTTCGGTATCCACCTGCGACGTTTTGAACGTTTC
GTTACGCGCAAATGCAAGGCGACGACCACACTGCTGTCCGCCGTGACATT
CAAAGCTCGCCGTAATACATATAAGTGTCGGGCCTAGGTACACGGGTGTG
CTCAGTAGGGCATATCGATGTACTCGGGGTCGATTTGTGAGTGCCACGCA
GACTCTATTCAAGCACCCGCGTAGATTTGACGTGCTACCGGGATGCCCTC
CGTACCCGGCGAATAGGAATCTACCTATACCCGGGTAGTACCAATCTACT
CTTTCCCGCGTAGATGGGCCTGAAACGTGTTCCCGGCAATCTATTTCTAT
CAGGGTAGGTTTAGGAAAAGTAGCACCAACAATATCCGGCCTCGAGTAGC
GCTTCATCCATGAAGAATTTCACTTCACAGCCGAGGATGCAAGACTTTTT
CTGTTATCGCTCGGTCGCGGGGTTGCGGATACAACAACAAACATCTGTTA
TTTCTTCAAGTATTTACACATTTGTTCTTTTCGCGAGTGGCACAACAAAC
ATCTGTTATTTCTTCAAGTATTTACACATTTGTTCTTTTCGCGAGTGGCA
GGACTACACATCTGCCGTTACTGCTCTCGTCCGTTTCACCCTGTTTTGGA
GGTCAAGCCTCCTGAGCGTGTCCCTCAGCGGTCGCTGAGTCTGTGCAGGA
AAATGCGCCGCTTACGACGAGCGTTTGCTACTCCTGTCGGTACGGTGTGG
GGCTGCATCATGATGTCGGCGTGCTTGTGGGTTGCGGCGGTTCCGTCGAA
CAAAGGCCTGCAGAGATGGGGTGGTCTACTCACAGGGGCTCACGAGAACT
CGGTACTACTACCCTGTTTTTTCCCCCGCCACCCCGGGTGTCCCACTCGG
AGACCCATACCCGGGTAGTGAAAAAGGACTGGCTCCCGGAGCTTGAAAAC
AAATGTTTCCTCCTAGTTTCCCCGGGTGTTGGACAGGATGTGGAACGTCT
CTCTCACCCTACCGTACCTCTCGGGGTTCCGGTGGCGTTAGCGCATGCCC
TGCGAAAAGACGCCCATCCCTGCTGGACATTCACCCACGTTTTCGGTCAC
TCTAATGCTCCAGATCCTGCCGCTACGCCGACATGCGGGTGGCGGTCGTC
CGTGATATCACCGATTTGTGTCTAGACTATATCTTGTTTGTTTTTTTTCC
TCGGCGTAGGTGCAAAGGCGAACGCGTCATCCAGGAGTCCGGCTGGCTTG
ACCTGACAATCCCCAAAGGAGCACCCGACCAGCACAGGATTCACTTTCCG
GGCGTCGGATCAAACTTTCCCGGAAGGACGGCGGGCGACGTCGAGGTAGG
GCGCCGATGCACTATGAGACAACCCCAAAAAGTTGTTGGTTTTGCGCATC
GTGTATGGTCGTCCAAACCGAAATAACATTGTTCCGCGCTTGTTTTGGTG
CGCCAGCATCATTGTACGGGAGAGAAGAGCGGGACCTTCGACAAGATCCT
TCCTGTTTCGTCCTGAAGTCGTGATTGTATAATAAGCCGTGAAATCTGAC
ATGTTTCTCGGGTGAACGGCCAGCCAAGTAGTGACACCGAAACACACTCT
GAAACAGGTGGCGGTCAACTTCAGAACAAACAAAAGTAACATTCCTGCCA
CCGCCTTCCTCAGGTGTTGGAGCACTTGCAACCGTTTGTGCTCCATCACA
AACACGTATTAAAGATCGCGCTTTGATTTGGTTGGCTTGTTCCACAAAAT
GTTTGGCCGGCTTTCACATGACGAGGGATTCGTGAGGCTCGAGTATATAT
CGCAACTTGCAACCCCACCCCCCCCCGTTTTTTGAAGGTCGCGATAAACA
TTGAGCCTCACGAACGGTTCATGCGAGACGGTTCCAATCTTCGAATGGAA
TTACCCATTTCTCTCACGGAAGCTCTCTCCGGCTTTACTCGAGAGATCCA
GCTGTTGAATGGGAGCACGGTCCTCCTCAATAGGACACGGGTGAGCGCCA
AGAAACCGACATGAAAGTTAACGCGGGTTTCCGTCGCAAGGAAACGACGG
GCAGAAATGGAAAGCGAAAGGCCCCTTATAAAGTTGACCACACAGAGATA
CATGTTTTATTGAGGTTGATACATACTTTAATACTGTCGTTCCTGCTTAG
ATCTTTGGGTGGGCTTGTTTCGGTGTGTTGTCACGTAGTTCATGCAGTAC
ACAAAAAACGCAACCCAACAAAACAAGGCGACATGATACGCCTTCGCCTA
CTTTTGCCACAATTGCACAGATGATCAGCCACAATGGTGAGGTAGAAATC
GAAGGAGGAGGGCTCCCGGTGTGGGATGGCGGCCGTGGGGCGGGCACTGG
ATGGAGCACACACTCGTCAACTAATGCCAGCGCACTCCTGGCCGACAAAA
CAGTTACCGGTTCGACGATCGTCACTTGCAGCGTTGAATTTCCAGAGATT
ACAAGCGAACGTCTTCAGGGCCTCGACAGCGCTGGGGCTGCTTCAGACGA
GTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:490967..496870+

>mRNA_Ecto-sp6_S_contig92.18429.1 ID=mRNA_Ecto-sp6_S_contig92.18429.1|Name=mRNA_Ecto-sp6_S_contig92.18429.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1821bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:490967..496870+ (Ectocarpus species6 EcLAC_371)
ATGAAGATGTGGCGCTTGAACTGGATCCACAGTACTGTGCTTTGTCTCGC
CATCCTAGGCAAGATCCGCGTTGCAAGCACTCAAGACAACGAGATCGAGG
TAACGTTGACCAGGGGAACGACTGGACTCGGCATTCACCTGGTCAGCGAG
TCGAAAACAGGATCACTGCCGAGGGGTGCCGTCGTTGACAGGGTGGTACC
CGAGAGCGCTGCTTCGTTCGTGCTGCTCAAGGGAGACATTCTCACGACGG
TAGCTGGTGTGGAGATCCGTCAATGGGCCCTGGACAACATCAACCGTCTG
CTGGAAACTCAGGTCCGGGTCAAGATCAAGTTAGTGAGGGCACCCCAACT
CGGCGAGATAGACTTCGGCCCAGTGGAAGGAGAAGGGGGAAGAGAGGAGA
GTGCATCATGCTACGCGAGCATCGAGGGAGATGTCGACGACTTGCACGCC
TTTGCATGTACCCCTGCGGCGTTCGGCGGCGACCTCCCCGCCTTCTCCGT
AGAGAGCTCCGCTCTCCCCATTGTCGTTGCTCAGCCCCTCGATCACTGCA
AGAGAAGCGGCTTCGACGCTAGTGGATCCGCGCTCTTGGTCTCAAAGGGG
GGGTGCCTGCCAGGCGCAAAGGCCGCCAACGCTGCTTGGAATGGTGCGGA
GGTCATGATCTTGGTGGACGGTCAATACCCCCCGCTTCCACCCTTGCCGA
GTGTCGCTGGCAAGAGGGTTTTGCCCCAAAGTTCGCGCGACACCTCGAAG
CTCCATGGCATCCCGGTTGTAATCGTCAGCAACGCAACAGGGTATCGAAT
GATCTCCGAAGTGCGAGAGAAGGGCAGGGAGGTGCTGACTTTTGCTCATT
CAGGTCCGCGTCCGTCCAGGCCGGCTACCAAACCTCGAAAGCAGATACCG
GTGGACGAGGCAGAGAGTCTTCCGGTTCGTGAGCATCCCTTCAACCTCAG
ATCTCTGTTCCGGGACGGTGAGATCGGGATCGAGTTTGGGAGCCCGGGGT
TGCCCAAGGGCCAGACACCGACAACCCATCTAGCGGCGTCGTGCGAGCTA
TCAACTCTGCTCACAGGCCTTACGAGAAGGGTACCCTTCGGTAGGACGGT
TCCCTGCCCGGTGTGCAACGGAAGGGGAGCTCCCGCAGAGGCAATGCGCC
CGTGTAAAGCATGCAGCTCTTCGGGCGAGCCGGGCGTGGCGGCCGCAGCC
CACGATCACAGCCACGAGGTGAAGCAATCTCTGAGGACCACTTGCCCGCG
CTGCCATGGGTTCGGAGAAGTCCCACAGTGGGGGCGTTCGTGCCAGCGGT
GCAAAGGCGAACGCGTCATCCAGGAGTCCGGCTGGCTTGACCTGACAATC
CCCAAAGGAGCACCCGACCAGCACAGGATTCACTTTCCGGGCGTCGGATC
AAACTTTCCCGGAAGGACGGCGGGCGACGTCGAGGTCGCGATAAACATTG
AGCCTCACGAACGGTTCATGCGAGACGGTTCCAATCTTCGAATGGAATTA
CCCATTTCTCTCACGGAAGCTCTCTCCGGCTTTACTCGAGAGATCCAGCT
GTTGAATGGGAGCACGGTCCTCCTCAATAGGACACGGATGATCAGCCACA
ATGGTGAGGTAGAAATCGAAGGAGGAGGGCTCCCGGTGTGGGATGGCGGC
CGTGGGGCGGGCACTGGATGGAGCACACACTCGTCAACTAATGCCAGCGC
ACTCCTGGCCGACAAAACAGTTACCGGTTCGACGATCGTCACTTGCAGCG
TTGAATTTCCAGAGATTACAAGCGAACGTCTTCAGGGCCTCGACAGCGCT
GGGGCTGCTTCAGACGAGTGA
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