mRNA_Ecto-sp6_S_contig92.18426.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18426.1
Unique NamemRNA_Ecto-sp6_S_contig92.18426.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18426.1 vs. uniprot
Match: A0A6H5L040_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L040_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 3.300e-114
Identity = 238/283 (84.10%), Postives = 242/283 (85.51%), Query Frame = 1 
Query:    1 PDGPSAPGVGHSQDHHEQQKFQQRERRPPCADSDDPAYACLVQRPPGSFADEIMVYLSLS--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARWASLGFSPDGKMAGPSEAVVGFVGAAEAGSXXXXXXXXXXXXAGVLRYRMDGYRIASVTPLSGRHQVLTEQSVETTAEGSLIVRYKRPLVETFSPGRDACAATATAVGGGGTGGLETAAAGAAAEVCSGKAGGSSMEWLDPRERGVVLLWAYGTGAWPSYHDATGAFVLPRLTAVEVD 843
            PDGPSAPGVG               RRPPCA+SDDPAYACLV RPPGSFADEIM+YLSLS  S      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ARWASLGFSPDGKMAGPSEAVVGFVGA EA SXXXXXXXXX   AGVLRYRMDGYRIASVTPLS RHQVLTEQSVETT EGSLIVR+KRPLVETFS GRDACAATA AVG  GTGGLE A AGA AEVCSG+AGGSSMEWLDPRERGVVLLWAYGTGAWPSYHDATGAFVLPRLTAVEVD
Sbjct:  100 PDGPSAPGVGXXXXXXXXXXXXXXXRRPPCAESDDPAYACLVPRPPGSFADEIMLYLSLSWSSSSVGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGARWASLGFSPDGKMAGPSEAVVGFVGATEAASXXXXXXXXXA--AGVLRYRMDGYRIASVTPLSDRHQVLTEQSVETTEEGSLIVRFKRPLVETFSAGRDACAATAAAVGEEGTGGLEAAVAGAVAEVCSGEAGGSSMEWLDPRERGVVLLWAYGTGAWPSYHDATGAFVLPRLTAVEVD 380
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L040_9PHAE3.300e-11484.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:469212..470826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1302
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001490.1
Cds size687
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350563.177915-UTR-Ecto-sp6_S_contig92:469211..4693701682350563.177915-UTR-Ecto-sp6_S_contig92:469211..469370Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 469212..469370 +
1682350563.2136745-UTR-Ecto-sp6_S_contig92:470370..4708261682350563.2136745-UTR-Ecto-sp6_S_contig92:470370..470826Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 470371..470826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350563.1927016-CDS-Ecto-sp6_S_contig92:469370..4696321682350563.1927016-CDS-Ecto-sp6_S_contig92:469370..469632Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 469371..469632 +
1682350563.2033706-CDS-Ecto-sp6_S_contig92:469945..4703701682350563.2033706-CDS-Ecto-sp6_S_contig92:469945..470370Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 469946..470370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18426.1prot_Ecto-sp6_S_contig92.18426.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 469371..470370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18426.1

>prot_Ecto-sp6_S_contig92.18426.1 ID=prot_Ecto-sp6_S_contig92.18426.1|Name=mRNA_Ecto-sp6_S_contig92.18426.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=229bp
MVYLSLSSSSSAVGDVAHQQQQQQQQWLSVKVVVPAASRGGGSGGGGGAR
WASLGFSPDGKMAGPSEAVVGFVGAAEAGSSSSSSSQEPPAAAGVLRYRM
DGYRIASVTPLSGRHQVLTEQSVETTAEGSLIVRYKRPLVETFSPGRDAC
AATATAVGGGGTGGLETAAAGAAAEVCSGKAGGSSMEWLDPRERGVVLLW
AYGTGAWPSYHDATGAFVLPRLTAVEVD*
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mRNA from alignment at Ecto-sp6_S_contig92:469212..470826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18426.1 ID=mRNA_Ecto-sp6_S_contig92.18426.1|Name=mRNA_Ecto-sp6_S_contig92.18426.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1615bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:469212..470826+ (Ectocarpus species6 EcLAC_371)
CCGGACGGCCCCTCGGCTCCGGGCGTCGGGCACAGCCAAGACCACCACGA
GCAGCAGAAGTTTCAGCAGCGGGAGCGGCGGCCTCCGTGCGCCGACAGCG
ACGACCCGGCCTACGCGTGCCTCGTGCAGCGCCCGCCCGGGTCTTTCGCG
GACGAGATCATGGTGTACCTCTCCTTGTCGTCGTCGTCGTCGGCTGTGGG
CGATGTAGCACATCAGCAGCAGCAGCAGCAGCAGCAGTGGCTTTCCGTCA
AGGTCGTGGTTCCCGCGGCATCTCGGGGGGGTGGAAGCGGGGGCGGAGGA
GGGGCGAGATGGGCTTCGCTTGGGTTCTCTCCGGACGGCAAGATGGCGGG
TCCGAGCGAGGCCGTGGTCGGGTTCGTGGGGGCGGCTGAGGCGGGCAGCA
GCAGCAGCAGCAGCAGCCAAGGTAAGGGACGTTTTTTTTATCTCGAGACA
GGAACGCTATATTTGTTTTAGAAAATGTATGCATGCAATCACTGAAAGAC
TTGCCCGGTTGAAATCAACCCCTCGGTTATTGGGAAAATATTTATGCCTG
CCTTCCACCCGATGTTGGTTTGAGCATAACTTTGTTTCGGCCGGCGAATT
AAGCGCGCGTTGAAAGGAAGTGACTTCGTTGCCTGCCATTTTGTTCTCGC
TGATTCTAATACATCCGTTTTTCTCGTGGACCGTCCACTTTGCCACTAAC
CGTTCCATCCCGTCCGGGCATCTGGCTGCCGCAGAACCACCGGCGGCGGC
GGGGGTCCTCCGCTACCGCATGGACGGTTACAGAATCGCCTCCGTGACAC
CCCTGTCGGGTCGACACCAGGTTCTGACCGAACAGAGCGTCGAGACCACC
GCAGAAGGTTCTCTCATCGTCCGTTACAAGCGCCCCCTGGTGGAAACATT
CTCGCCGGGTCGAGACGCTTGCGCGGCGACGGCGACGGCCGTGGGGGGAG
GAGGTACGGGGGGACTGGAGACGGCTGCTGCAGGAGCGGCGGCGGAGGTC
TGCTCGGGGAAAGCGGGCGGATCATCCATGGAGTGGTTGGATCCCCGAGA
GCGGGGCGTGGTGCTGCTTTGGGCCTACGGCACGGGGGCCTGGCCGAGCT
ACCACGACGCCACGGGGGCGTTTGTTCTGCCGCGGTTGACAGCAGTAGAG
GTTGATTGACCCTCGCACGAGCGGTTCCTTCTCTGTAGAAGCGTCTTGAC
TGCGGCCGAAGTTGCTGTTGGTGTTGGGGCTGTTACAGCAGTAGAGGGGG
TGGTTTTCCAACCCCCCACCTTGTGCAGAAAGGCTTTTCTTTTGTGGGAG
AATCTTCGGTTCTTGTCTTTTGTTGTGTTTCTTGGTTCGCCGTCGATCAA
AGACGGATGAAAAAGTTTTTTTTGGAAGCACGATCAACGCTTCTCTCGCC
TTTGTTGTTCGCAACCTTGGTGATTGGCATTTGAGGTCATGTCCATGTGC
GCTGTTGCGAGGCAGTCCGGTACTACATGTTGTGAGCGCCAAGGAGGTAT
TTTGTTGTTTTACGTAGACCCCACGATCCCCTCCCCTCTTTGGAGGGCGT
TCATGACGAAGCTATTCTTGTTCCACACTCCAAATACACTAGTCTACACT
ACGTGCCAAGTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:469212..470826+

>mRNA_Ecto-sp6_S_contig92.18426.1 ID=mRNA_Ecto-sp6_S_contig92.18426.1|Name=mRNA_Ecto-sp6_S_contig92.18426.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:469212..470826+ (Ectocarpus species6 EcLAC_371)
ATGGTGTACCTCTCCTTGTCGTCGTCGTCGTCGGCTGTGGGCGATGTAGC
ACATCAGCAGCAGCAGCAGCAGCAGCAGTGGCTTTCCGTCAAGGTCGTGG
TTCCCGCGGCATCTCGGGGGGGTGGAAGCGGGGGCGGAGGAGGGGCGAGA
TGGGCTTCGCTTGGGTTCTCTCCGGACGGCAAGATGGCGGGTCCGAGCGA
GGCCGTGGTCGGGTTCGTGGGGGCGGCTGAGGCGGGCAGCAGCAGCAGCA
GCAGCAGCCAAGAACCACCGGCGGCGGCGGGGGTCCTCCGCTACCGCATG
GACGGTTACAGAATCGCCTCCGTGACACCCCTGTCGGGTCGACACCAGGT
TCTGACCGAACAGAGCGTCGAGACCACCGCAGAAGGTTCTCTCATCGTCC
GTTACAAGCGCCCCCTGGTGGAAACATTCTCGCCGGGTCGAGACGCTTGC
GCGGCGACGGCGACGGCCGTGGGGGGAGGAGGTACGGGGGGACTGGAGAC
GGCTGCTGCAGGAGCGGCGGCGGAGGTCTGCTCGGGGAAAGCGGGCGGAT
CATCCATGGAGTGGTTGGATCCCCGAGAGCGGGGCGTGGTGCTGCTTTGG
GCCTACGGCACGGGGGCCTGGCCGAGCTACCACGACGCCACGGGGGCGTT
TGTTCTGCCGCGGTTGACAGCAGTAGAGGTTGATTGA
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