mRNA_Ecto-sp6_S_contig92.18422.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18422.1
Unique NamemRNA_Ecto-sp6_S_contig92.18422.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18422.1 vs. uniprot
Match: D7FPS5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS5_ECTSI)

HSP 1 Score: 454 bits (1168), Expect = 1.060e-153
Identity = 281/305 (92.13%), Postives = 285/305 (93.44%), Query Frame = 1 
Query:    1 MSRTRDLSSVCSINSSTSCCSIGSGPPLLDDAEDDTGRATSRGGGYISEDDRQSLAYSSAAPEANGDTTTRSGRASQARGSNKRNNGRVNVSRRSQRPLREVVARRAFECVVGTHGELSKVLKTTVEIDAAPKQTRDRYDQDEXXXXXXXXXXR------SYPYHDRHGRHSRVDSPGLGCRVEPVIHGEDIDIDHQASSGSFWGVDLHWCDLESLAGLPAELGDSPWALPGKGSEKDXXXXXXXXXXXXXXXSWRCIYLDASLNRLRGIDAIADEASLRDLXXXXXXXXXXXXXXXVQNLRNMQ 897
            MSRTRDLSSVCSINSSTSCCSI SGPPLLDDAEDDTGRATSRGGGYISEDDRQSLAYSSA PEANGDTTTRSGRASQARGSNKRNNGRVNVS RSQRPLREVVARRAFECVVGTHGELSKVL+ TVEIDAAPKQTRDRYDQD XXXXXXXXXX       S  +HDRHGRHSRVDSPGLGCRVEPV+HGEDIDIDHQASSGSFWGVDLHWCDLESLAGLPAELGDSPWAL GKG EKD XXXXXXXXXXXX  SWRC+YLDASLNRLRGIDAIADEASLRDL XXXXXXXXXXXXXXVQNLRNMQ
Sbjct:    1 MSRTRDLSSVCSINSSTSCCSISSGPPLLDDAEDDTGRATSRGGGYISEDDRQSLAYSSAVPEANGDTTTRSGRASQARGSNKRNNGRVNVSSRSQRPLREVVARRAFECVVGTHGELSKVLRITVEIDAAPKQTRDRYDQDXXXXXXXXXXXXXXXSDTSGQHHDRHGRHSRVDSPGLGCRVEPVLHGEDIDIDHQASSGSFWGVDLHWCDLESLAGLPAELGDSPWALSGKGGEKDDXXXXXXXXXXXXE-SWRCLYLDASLNRLRGIDAIADEASLRDLVXXXXXXXXXXXXXXVQNLRNMQ 304
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BLAST of mRNA_Ecto-sp6_S_contig92.18422.1 vs. uniprot
Match: A0A6H5KZ74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ74_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 7.110e-119
Identity = 227/282 (80.50%), Postives = 238/282 (84.40%), Query Frame = 1 
Query:    1 MSRTRDLSSVCSINSSTSCCSIGSGPPLLDDAEDDTGRATSRGGGYISEDDRQSLAYSSAAPEANGDTTTRSGRASQARGSNKRNNGRVNVSRRSQRPLREVVARRAFECVVGTHGELSKVLKTTVEIDAAPKQTRDRYDQDEXXXXXXXXXXR------SYPYHDRHGRHSRVDSPGLGCRVEPVIHGEDIDIDHQASSGSFWGVDLHWCDLESLAGLPAELGDSPWALPGKGSEKDXXXXXXXXXXXXXXXSWRCIYLDASLNRLRGIDAIADEASLRDL 828
            M+RTRDLSSVCSINSSTS CSI SGP LL+DAE DTGRATSRGGG  SE DRQ    SSAAPEA+GD T RSGRASQA GSNKR+NGRVNVSR SQRPLREVVARRAFECVVGTHG LSKVL+   E DAA  QTRDRYD   XXXXXXXXXX       S  +HDRHGRHSRVDSPGLGCRVEPV+HGEDID  HQASSGSFWGVDLHWCDLESLAGLPAELG SPWA PGKGS+K+ XXXXXXXXX     SWRC+YLDASLNRLRGIDA+ADEASLRDL
Sbjct:    1 MTRTRDLSSVCSINSSTSFCSISSGPSLLEDAEHDTGRATSRGGGNSSEYDRQ---CSSAAPEADGDVTARSGRASQAGGSNKRHNGRVNVSR-SQRPLREVVARRAFECVVGTHGGLSKVLRIIAESDAAAAQTRDRYDXXXXXXXXXXXXXXXXXSETSGQHHDRHGRHSRVDSPGLGCRVEPVLHGEDIDTYHQASSGSFWGVDLHWCDLESLAGLPAELGGSPWAPPGKGSDKEDXXXXXXXXXNEDV-SWRCLYLDASLNRLRGIDALADEASLRDL 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPS5_ECTSI1.060e-15392.13Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KZ74_9PHAE7.110e-11980.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:445260..447718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size901
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-18_001550.2
Cds size900
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350562.8223238-CDS-Ecto-sp6_S_contig92:445259..4453311682350562.8223238-CDS-Ecto-sp6_S_contig92:445259..445331Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 445260..445331 -
1682350562.8317537-CDS-Ecto-sp6_S_contig92:445871..4460061682350562.8317537-CDS-Ecto-sp6_S_contig92:445871..446006Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 445872..446006 -
1682350562.840211-CDS-Ecto-sp6_S_contig92:446272..4463921682350562.840211-CDS-Ecto-sp6_S_contig92:446272..446392Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 446273..446392 -
1682350562.848174-CDS-Ecto-sp6_S_contig92:447145..4477181682350562.848174-CDS-Ecto-sp6_S_contig92:447145..447718Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 447146..447718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18422.1prot_Ecto-sp6_S_contig92.18422.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 445260..447718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18422.1

>prot_Ecto-sp6_S_contig92.18422.1 ID=prot_Ecto-sp6_S_contig92.18422.1|Name=mRNA_Ecto-sp6_S_contig92.18422.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=300bp
MSRTRDLSSVCSINSSTSCCSIGSGPPLLDDAEDDTGRATSRGGGYISED
DRQSLAYSSAAPEANGDTTTRSGRASQARGSNKRNNGRVNVSRRSQRPLR
EVVARRAFECVVGTHGELSKVLKTTVEIDAAPKQTRDRYDQDEPQQTETE
TETRSYPYHDRHGRHSRVDSPGLGCRVEPVIHGEDIDIDHQASSGSFWGV
DLHWCDLESLAGLPAELGDSPWALPGKGSEKDEDEDEDEDEDEDEDESWR
CIYLDASLNRLRGIDAIADEASLRDLVYLDVSYNLIRDLDAVQNLRNMQA
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mRNA from alignment at Ecto-sp6_S_contig92:445260..447718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18422.1 ID=mRNA_Ecto-sp6_S_contig92.18422.1|Name=mRNA_Ecto-sp6_S_contig92.18422.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2459bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:445260..447718- (Ectocarpus species6 EcLAC_371)
ATGAGTAGAACAAGAGACCTTTCAAGCGTATGCAGCATCAACAGCAGCAC
CAGTTGTTGCAGCATCGGCAGCGGGCCACCGCTACTAGACGACGCTGAAG
ATGACACCGGCCGGGCAACATCCCGTGGCGGCGGGTATATCAGCGAAGAT
GACCGACAGTCGCTGGCGTACTCCTCTGCTGCACCCGAAGCCAATGGGGA
CACGACTACCCGATCAGGCAGGGCTTCGCAGGCTCGCGGCTCTAACAAGC
GCAACAACGGCAGAGTCAACGTCAGCAGAAGAAGTCAGCGCCCACTCCGT
GAGGTCGTTGCGCGGAGGGCCTTCGAGTGTGTCGTTGGTACTCACGGGGA
GTTATCAAAGGTGCTTAAAACTACCGTGGAGATTGACGCTGCTCCCAAGC
AAACCCGGGACCGCTATGACCAAGACGAGCCCCAGCAGACAGAAACAGAA
ACAGAAACCAGATCTTACCCATATCATGATCGCCATGGAAGGCACTCTCG
TGTTGACTCCCCAGGCCTAGGCTGTCGGGTGGAGCCGGTGATTCATGGGG
AAGACATCGACATTGATCACCAGGTATTGACGTGGTAACCTCGAAGGCCA
TGTATCAGTGGTGGCTACAGTAGGGTCGGCAGGTCGATTCTCGGCGAGGT
GGGGTCTCTTGTTTCCGTTGTAGCAGCTGGTATGTAGCCCACACAGCAGT
ATTTGCGGAAAATCTCTTATCCGTTAGCAAACTTGTGGACCCCTGAATCC
TTCTGGCGTCAAAATTTCAACGCAGGGGAAGTGTTCTGTGTAACCCCGGA
TCGAAGCTCTCCAGTTAGAGAGTCAAGGCCGTAAGATAGTTGGACTCTGG
GAGCGACTTGGGGCGAGAGAATGAAACGTTCTTGAGTCAAACAAGTTTCT
AAGAATAATCGGAAATGTGCGGGTAGGTCTGGATGAGTTAATACAAATAT
GTATCACAATATGCAACTTCTTCGTGGTGAAGGTCGCGATATATCGCCTG
CAGTTGTGAGCGTGTGCATGCGTACTGCAGAAAACAACTCAGCCACCCGT
CAACTTTATTTGCCTGTGGGGCAACTAGGAAAGAAGATCGTAGCCAGAGC
GAGCACGTCTTCGTGCTGAAGCCTTGCCAAGTTTTCGTGGGCGAGGTTTC
ACCCGCTCATGGGGAGGGGGGATTTTTTCGGCGTGTTAAGAAACGATCGT
CAACATGGTGTCGACACCAAATCGAACCATGCACCATGTACGCTGTAGAT
GTCATTGAGTGGACATGCACTGTACGTGTGTGCGCGACGTTCGCATGCCC
TTCTAAACGAAACCATTAATGGGAAGGCTTCATCTGGAAGCTTTTGGGGC
GTTGACTTGCACTGGTGTGACCTCGAGTCGCTCGCCGGACTTCCAGCTGA
ACTAGGCGATTCGCCCTGGGCCCTGCCTGGCAAAGGTAGCGAGAAAGTGA
GCCACCGAGTCGGATCCGTGTTTTCGCTATGTTTTCTGCTTGGGACTTAA
TATCCGATTTTCCCCCTTCCTCTATACAACGTGCGGAATCATCCACGCGT
ACGTGTACATGGTGCGGTATAATACACCAAGGATGGAATCGAAACGTCGC
ACACGCTGCGGTCAGACAGTTTCGTTTCAAGGAAAACAACCCACCGGAAA
ATATCCCTAAAAGTTTCTAAGCATCCACCACATCATGGTCGTTCCAGGAG
GACGAGGACGAGGACGAGGACGAGGACGAGGACGAGGATGAGGATGAGGA
TGAGGACGAATCGTGGCGATGCATTTACTTGGACGCGTCTCTGAACAGGC
TCAGGGGGATTGATGCTATAGCGGATGAGGCTAGCCTGCGCGACTTGGTA
AGCCCATTTTTCAACTCGAATCCGTTGTTGACCACCTCTCTTCCGGGAAG
GGTAAATCTGGTATGAATATCAGCGCTTGTGCTTGGTTGTGTGTAGACAT
TTTGATGGAACGAAGTTATGGCGAGACTTGGCCTCCGTCAGGCATGTTTT
ACCCCGACTGTTCTTCAGAGATCCCGGGGCTTGTAAGCAAACGTGAAGAC
GGGACCAAGCTGTACCGATGCAAAACGGAAACCTGAAACTAGAGTGTGAA
GGCATCAGTGAGATCCCGCCCCAATTTTCCATTGCGCACGCTGTGCAGTC
TCAGCCAAGAAAACGCTTCTGCCGTGTGTTGTGTTGTGATAAGAAAACAA
TCTCCAACATCGACAAGATTCGAGGTCAAGATTGCCAGGGCGGCAGTGGG
CCAAGCGAGAATGTCCATTCCCGTTGCAGGCTTAGATACACTCTGAAGAT
GCAGGCTTAGATACACCCTGACGATGGAATCAAGCCGCCGAACAGCAACT
CCCCCGTCAATCGCATTCGTTGTCGTTTCCCTTGCAGGTGTACCTCGACG
TCTCGTACAACCTAATCAGAGACCTGGACGCTGTCCAAAACCTTCGCAAT
ATGCAGGCT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:445260..447718-

>mRNA_Ecto-sp6_S_contig92.18422.1 ID=mRNA_Ecto-sp6_S_contig92.18422.1|Name=mRNA_Ecto-sp6_S_contig92.18422.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:445260..447718- (Ectocarpus species6 EcLAC_371)
ATGAGTAGAACAAGAGACCTTTCAAGCGTATGCAGCATCAACAGCAGCAC
CAGTTGTTGCAGCATCGGCAGCGGGCCACCGCTACTAGACGACGCTGAAG
ATGACACCGGCCGGGCAACATCCCGTGGCGGCGGGTATATCAGCGAAGAT
GACCGACAGTCGCTGGCGTACTCCTCTGCTGCACCCGAAGCCAATGGGGA
CACGACTACCCGATCAGGCAGGGCTTCGCAGGCTCGCGGCTCTAACAAGC
GCAACAACGGCAGAGTCAACGTCAGCAGAAGAAGTCAGCGCCCACTCCGT
GAGGTCGTTGCGCGGAGGGCCTTCGAGTGTGTCGTTGGTACTCACGGGGA
GTTATCAAAGGTGCTTAAAACTACCGTGGAGATTGACGCTGCTCCCAAGC
AAACCCGGGACCGCTATGACCAAGACGAGCCCCAGCAGACAGAAACAGAA
ACAGAAACCAGATCTTACCCATATCATGATCGCCATGGAAGGCACTCTCG
TGTTGACTCCCCAGGCCTAGGCTGTCGGGTGGAGCCGGTGATTCATGGGG
AAGACATCGACATTGATCACCAGGCTTCATCTGGAAGCTTTTGGGGCGTT
GACTTGCACTGGTGTGACCTCGAGTCGCTCGCCGGACTTCCAGCTGAACT
AGGCGATTCGCCCTGGGCCCTGCCTGGCAAAGGTAGCGAGAAAGACGAGG
ACGAGGACGAGGACGAGGATGAGGATGAGGATGAGGACGAATCGTGGCGA
TGCATTTACTTGGACGCGTCTCTGAACAGGCTCAGGGGGATTGATGCTAT
AGCGGATGAGGCTAGCCTGCGCGACTTGGTGTACCTCGACGTCTCGTACA
ACCTAATCAGAGACCTGGACGCTGTCCAAAACCTTCGCAATATGCAGGCT
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