mRNA_Ecto-sp6_S_contig92.18420.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18420.1
Unique NamemRNA_Ecto-sp6_S_contig92.18420.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18420.1 vs. uniprot
Match: D7FPS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS6_ECTSI)

HSP 1 Score: 489 bits (1258), Expect = 6.540e-170
Identity = 332/371 (89.49%), Postives = 337/371 (90.84%), Query Frame = 1 
Query:    4 AKPCVMRGVQQTQALFSQGQQARKSPAPAVRRSELPNTPSSSTRTXXXXXXXXXXXXXXXXXXXXXXXLASSLSSTPVAPIRAPPPASPRRPTVPLASTGKRQRDGEGLQKPEATRAERTKAGPRRLQNIGPVPTTAIATASXXXXXXXXXXXXXXXXXXXXXXITATITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSCSEKDVETIGAAKKIAEVHCCHQPQHENEGWVRVPYLSDEDGGKEVAGAFVHLPVTILPPTCGQVCDEGTVYVRPGGGPPTREWYHEDQRVVWKVPKSTILDKVILTFSAASRDACCLRNIVPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRREVGDY 1116
            AK C+MR VQQTQALFSQG+QARK PAPAV RS+LP TPSSSTRTXXXXXXXXXXXXXXXXXXXXXXX          APIRA PPASPRRPTVPLASTGKRQRDGEGLQKPE TRAER KA PRRLQNIGPVPTTAIATAS XXXXXXXXXXXXXXXX     ITAT+T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EKDVETI AAKKIAEVHCCHQPQHENEGWVRVPYLSDED GKEVAGAFVHLPVTILPPTCGQVCDEGTVYVRPGGGPPTREWYHEDQRVVWKVPKS ILDKVILTFSAASRDA CLRN+VPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRREVGDY
Sbjct:    2 AKSCIMRDVQQTQALFSQGRQARKPPAPAVERSKLPYTPSSSTRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIRALPPASPRRPTVPLASTGKRQRDGEGLQKPEETRAERMKAAPRRLQNIGPVPTTAIATASTXXXXXXXXXXXXXXXXIT---ITATVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKDVETIAAAKKIAEVHCCHQPQHENEGWVRVPYLSDEDEGKEVAGAFVHLPVTILPPTCGQVCDEGTVYVRPGGGPPTREWYHEDQRVVWKVPKSIILDKVILTFSAASRDARCLRNMVPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRREVGDY 369
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BLAST of mRNA_Ecto-sp6_S_contig92.18420.1 vs. uniprot
Match: A0A6H5JM23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM23_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 5.820e-144
Identity = 234/390 (60.00%), Postives = 245/390 (62.82%), Query Frame = 1 
Query:    4 AKPCVMRGVQQTQALFSQGQQARKSPAPAVRRSELPNTPSSSTRTXXXXXXXXXXXXXXXXXXXXXXXLASSLSSTPVAPIRAPPPASPRRPTVPLASTGKRQRDGEGLQKPEATRAERTKAGPRRLQNIGPVPTTAIATASXXXXXXXXXXXXXXXXXXXXXXITATITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSCSEKDVETIGAAKKIAEVHCCHQPQHENEGWVRVPYLSDEDGGKEVAGAFVHLPVTILPPTCGQVCDEGTVYVRPGGGPPTREWYHEDQRVVWKVPKSTILDKVILTFSAASRDACCLRNIVPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRREVGDYRELRGYGQFAWASACDCNC 1173
            AK C+MR VQQTQALFSQGQ A KSPA AVRRS+LP+T S+STRT                       LAS                         AST KRQRDGEGLQKPE TRAERTKA  RR+ NI PVPTTA  +  XX                    ITA                                     T+CSEKDV+TI AAKKIAEVHCCHQPQHENEGWVRVPYLSDEDGGKEV GAFVHLPV ILPPTCGQVCDEGTVYVRPGGG PTREWYHEDQRVVW+VPKSTILDK                  VPAG+GAKCDACHDD+RGCSWTPDGLELLCNYCADAPRREVGDYRELRGYGQF W SACDCNC
Sbjct:   32 AKSCIMRDVQQTQALFSQGQHAEKSPARAVRRSKLPDTASNSTRTPAPVLMKVVKTPAPTTPTKKPSPLASRPXXXXXXXXXXXXXXXXXXXXXXXASTRKRQRDGEGLQKPEETRAERTKAATRRVPNIVPVPTTATTSXXXX--------------------ITA------------------------------------FTTCSEKDVKTIAAAKKIAEVHCCHQPQHENEGWVRVPYLSDEDGGKEVVGAFVHLPVAILPPTCGQVCDEGTVYVRPGGGRPTREWYHEDQRVVWEVPKSTILDK------------------VPAGEGAKCDACHDDKRGCSWTPDGLELLCNYCADAPRREVGDYRELRGYGQFTWVSACDCNC 347
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BLAST of mRNA_Ecto-sp6_S_contig92.18420.1 vs. uniprot
Match: D7FU97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU97_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 9.910e-99
Identity = 244/367 (66.49%), Postives = 251/367 (68.39%), Query Frame = 1 
Query:    4 AKPCVMRGVQQTQALFSQGQQARKSPAPAVRRSELPNTPSSSTRTXXXXXXXXXXXXXXXXXXXXXXXLASSLSSTPVAPIRAPPPASPRRPTVPLASTGKRQRDGEGLQKPEATRAERTKAGPRRLQNIGPVPTTAIATASXXXXXXXXXXXXXXXXXXXXXXITATITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSCSEKDVETIGAAKKIAEVHCCHQPQHENEGWVRVPYLSDEDGGKEVAGAFVHLPVTILPPTCGQVCDEGTVYVRPGGGPPTREWYHEDQRVVWKVPKSTILDKVILTFSAASRDACCLRNIVPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRRE 1104
            AK C++  VQQTQALFSQG++ARK PAPAV RS+LP TPSSSTRT                  XXXXX                    PRRPTVPLASTGKRQRDG+GLQKPE TRAER KA PRRLQNIGPV TTA  TA XXXXXXXXXXXXXXXXXXXX  ITATIT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EKDVETI AAKKIAEVHCCHQPQHENEGWVR+PYLSDEDGGKEVAGAFVHLPVTILPPTCGQ                                                         VPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRRE
Sbjct:   32 AKSCIVLDVQQTQALFSQGREARKLPAPAVERSKLPYTPSSSTRTPAPVVVRAVKTPAPTIPTXXXXXXXXXXXXXXXXXXXXXXXXXPRRPTVPLASTGKRQRDGKGLQKPEETRAERMKAAPRRLQNIGPVATTA--TALXXXXXXXXXXXXXXXXXXXXITITATITAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKDVETIAAAKKIAEVHCCHQPQHENEGWVRMPYLSDEDGGKEVAGAFVHLPVTILPPTCGQ---------------------------------------------------------VPAGKGAKCDACHDDRRGCSWTPDGLELLCNYCADAPRRE 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPS6_ECTSI6.540e-17089.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM23_9PHAE5.820e-14460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU97_ECTSI9.910e-9966.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:432825..434922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1176
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001560.1
Cds size1158
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350562.6883826-CDS-Ecto-sp6_S_contig92:432824..4330161682350562.6883826-CDS-Ecto-sp6_S_contig92:432824..433016Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 432825..433016 -
1682350562.699318-CDS-Ecto-sp6_S_contig92:433294..4334651682350562.699318-CDS-Ecto-sp6_S_contig92:433294..433465Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 433295..433465 -
1682350562.709607-CDS-Ecto-sp6_S_contig92:433711..4338731682350562.709607-CDS-Ecto-sp6_S_contig92:433711..433873Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 433712..433873 -
1682350562.717717-CDS-Ecto-sp6_S_contig92:434271..4349041682350562.717717-CDS-Ecto-sp6_S_contig92:434271..434904Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 434272..434904 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350562.7256453-UTR-Ecto-sp6_S_contig92:434904..4349221682350562.7256453-UTR-Ecto-sp6_S_contig92:434904..434922Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 434905..434922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18420.1prot_Ecto-sp6_S_contig92.18420.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 432825..434904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18420.1

>prot_Ecto-sp6_S_contig92.18420.1 ID=prot_Ecto-sp6_S_contig92.18420.1|Name=mRNA_Ecto-sp6_S_contig92.18420.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=386bp
MRGVQQTQALFSQGQQARKSPAPAVRRSELPNTPSSSTRTPAPVIVRAVK
TPAPTTSTKKPSPLASSLSSTPVAPIRAPPPASPRRPTVPLASTGKRQRD
GEGLQKPEATRAERTKAGPRRLQNIGPVPTTAIATASTITAATITTSTPT
TATTATTITITATITATNATITATTATTPTATTITASTTAITTATITAAT
SCSEKDVETIGAAKKIAEVHCCHQPQHENEGWVRVPYLSDEDGGKEVAGA
FVHLPVTILPPTCGQVCDEGTVYVRPGGGPPTREWYHEDQRVVWKVPKST
ILDKVILTFSAASRDACCLRNIVPAGKGAKCDACHDDRRGCSWTPDGLEL
LCNYCADAPRREVGDYRELRGYGQFAWASACDCNC*
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mRNA from alignment at Ecto-sp6_S_contig92:432825..434922-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18420.1 ID=mRNA_Ecto-sp6_S_contig92.18420.1|Name=mRNA_Ecto-sp6_S_contig92.18420.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2098bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:432825..434922- (Ectocarpus species6 EcLAC_371)
CAGGCCAAGCCCTGTGTTATGCGAGGCGTCCAACAGACCCAGGCGTTGTT
CTCGCAAGGTCAGCAAGCGAGAAAGTCCCCGGCGCCGGCAGTTCGGCGAT
CGGAGCTCCCCAATACCCCTTCGAGCTCGACCCGGACACCTGCACCCGTC
ATCGTGAGGGCGGTGAAGACGCCGGCACCCACCACATCGACGAAGAAGCC
GTCACCGCTCGCATCCAGCTTATCATCGACACCGGTGGCGCCGATCCGAG
CGCCCCCCCCCGCTTCCCCGAGGAGGCCGACAGTTCCGTTGGCCTCAACC
GGGAAACGCCAGCGCGATGGTGAGGGCTTGCAGAAGCCGGAGGCGACAAG
AGCGGAGCGGACGAAAGCGGGGCCGCGCAGACTCCAGAACATCGGGCCCG
TCCCCACCACTGCCATCGCCACCGCCTCCACCATCACCGCAGCCACCATC
ACCACCTCCACCCCCACCACCGCCACCACCGCCACCACCATCACCATCAC
CGCCACCATCACTGCCACCAACGCCACCATCACTGCCACCACCGCCACCA
CCCCCACCGCCACCACCATCACCGCCTCCACCACCGCCATCACCACTGCC
ACCATCACCGCCGCCACCTCCTGCTCCGAGAAAGACGTAGAGACGATTGG
GGTAAGAATGCCGCGAGACATGTTTACACGTTTGTTTAAAGATCATTGTT
CACAACCATGATCGACTGTAAGGCTCTCAATCTTTGACAGGTGGTCCAAA
CACGTGTTTCAGCCTAGAAAAATTCGTCATTGCATGTGTAGCAGGTGCCT
TCGGCGGTAGGGTCTTGATGCACCCTCTTATCCGGCCACCTACATCCTTA
GCGAAAATAAGTGTCCGTGAAGGCTTTTCTGGTGCCAGCAGCAGCCTTGC
ACTGTACTTTTCTCACGCGCAATACCAAGTGAAAGCCCCGTGGACACCTC
GCCCGCTGACCCAAAGCATCAATCCCGGGCAAAAAAAATTCTGCCAATAC
GACAGTGCACCCCCCCCGCACCGTGTTCTTACAATATCCGTCTCAATAGG
CTGCCAAGAAGATCGCGGAGGTGCACTGCTGCCACCAACCGCAGCACGAG
AACGAGGGGTGGGTGCGGGTGCCGTACCTGAGCGACGAGGACGGCGGCAA
GGAGGTGGCCGGCGCATTTGTCCACCTTCCCGTGACGATCCTTCCGCCGA
CCTGCGGCCAGGTGCATATCCTTTGATGATGGGCTGACCTGAAACCAACA
TGTTCCGTTCCGGCCGATTGCTCTCGTGATGCCATCGTTCGCGCCAATTG
GTCGGCCCTGCGGGGTGCGAAGGTCGACGTTTTCGGCGTAAAGCTTTAGG
TGATCGCGCAGCGATACCACAAATGTAGCACAGCTTATCGGGAGTCATAA
CACCCCCCCCTCCCCATCCCCATGTTTTCACTCAAATTGCTGTTTCTATA
TTGACAGGTTTGCGACGAGGGCACGGTGTACGTCCGACCGGGCGGAGGAC
CGCCGACCCGAGAGTGGTACCACGAGGACCAGCGTGTTGTCTGGAAGGTG
CCCAAGTCCACCATTCTGGACAAGGTAATCCTGACCTTCTCAGCAGCAAG
CAGAGACGCTTGCTGCCTCAGGAATATTGTGCGTCCTCCTTGCTCGGCAG
TAATCCCGAGCCTGAGAAGAAATTTTGTCGTACGGCAGGCCAATCGCTAT
CCTTTCTTTCCCCCATTAAGCTCAGAAACCCGTCCGAAGCACCGCTTCCG
ACACGTCCATGCTCTCGCGTCCGACAGTTGCTGCCCTCACATGAAGACCA
GACTACTGCCATTCCCTGTATTCATCGCTCCACACCACTCTCTTGTCTCC
GTCTCTCTGTGTCTCTCTTCTGCTAAAAATTCATTCCTGCACAAACAATG
TCCCAGGTGCCCGCGGGAAAAGGCGCAAAGTGCGACGCCTGCCACGACGA
CAGGCGGGGGTGCAGCTGGACGCCCGACGGGCTCGAGTTGCTCTGCAACT
ACTGTGCGGATGCGCCTCGCCGCGAGGTGGGTGACTACCGTGAGCTGCGC
GGCTATGGCCAGTTCGCGTGGGCCAGCGCATGCGACTGCAACTGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:432825..434922-

>mRNA_Ecto-sp6_S_contig92.18420.1 ID=mRNA_Ecto-sp6_S_contig92.18420.1|Name=mRNA_Ecto-sp6_S_contig92.18420.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:432825..434922- (Ectocarpus species6 EcLAC_371)
ATGCGAGGCGTCCAACAGACCCAGGCGTTGTTCTCGCAAGGTCAGCAAGC
GAGAAAGTCCCCGGCGCCGGCAGTTCGGCGATCGGAGCTCCCCAATACCC
CTTCGAGCTCGACCCGGACACCTGCACCCGTCATCGTGAGGGCGGTGAAG
ACGCCGGCACCCACCACATCGACGAAGAAGCCGTCACCGCTCGCATCCAG
CTTATCATCGACACCGGTGGCGCCGATCCGAGCGCCCCCCCCCGCTTCCC
CGAGGAGGCCGACAGTTCCGTTGGCCTCAACCGGGAAACGCCAGCGCGAT
GGTGAGGGCTTGCAGAAGCCGGAGGCGACAAGAGCGGAGCGGACGAAAGC
GGGGCCGCGCAGACTCCAGAACATCGGGCCCGTCCCCACCACTGCCATCG
CCACCGCCTCCACCATCACCGCAGCCACCATCACCACCTCCACCCCCACC
ACCGCCACCACCGCCACCACCATCACCATCACCGCCACCATCACTGCCAC
CAACGCCACCATCACTGCCACCACCGCCACCACCCCCACCGCCACCACCA
TCACCGCCTCCACCACCGCCATCACCACTGCCACCATCACCGCCGCCACC
TCCTGCTCCGAGAAAGACGTAGAGACGATTGGGGCTGCCAAGAAGATCGC
GGAGGTGCACTGCTGCCACCAACCGCAGCACGAGAACGAGGGGTGGGTGC
GGGTGCCGTACCTGAGCGACGAGGACGGCGGCAAGGAGGTGGCCGGCGCA
TTTGTCCACCTTCCCGTGACGATCCTTCCGCCGACCTGCGGCCAGGTTTG
CGACGAGGGCACGGTGTACGTCCGACCGGGCGGAGGACCGCCGACCCGAG
AGTGGTACCACGAGGACCAGCGTGTTGTCTGGAAGGTGCCCAAGTCCACC
ATTCTGGACAAGGTAATCCTGACCTTCTCAGCAGCAAGCAGAGACGCTTG
CTGCCTCAGGAATATTGTGCCCGCGGGAAAAGGCGCAAAGTGCGACGCCT
GCCACGACGACAGGCGGGGGTGCAGCTGGACGCCCGACGGGCTCGAGTTG
CTCTGCAACTACTGTGCGGATGCGCCTCGCCGCGAGGTGGGTGACTACCG
TGAGCTGCGCGGCTATGGCCAGTTCGCGTGGGCCAGCGCATGCGACTGCA
ACTGCTGA
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