mRNA_Ecto-sp6_S_contig92.18398.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18398.1
Unique NamemRNA_Ecto-sp6_S_contig92.18398.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18398.1 vs. uniprot
Match: A0A6H5L1F7_9PHAE (MMR_HSR1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F7_9PHAE)

HSP 1 Score: 730 bits (1885), Expect = 3.750e-263
Identity = 374/406 (92.12%), Postives = 388/406 (95.57%), Query Frame = 1 
Query:    1 MVDSTLGVRIALIGRNSTCKSLFLKAASSSDKPLPNTASDAEVWWTSPLAPREADLAHAPEHGFAPSGERLLPAQLNQASAASVLGEEGKQSDGDGCEQAAADAAGPGAGEATPAVLMVVGADMAFHKGYPRPNRGGVTPVKAAVSRVRERLGGGQIPLAVAVSFDVEWDGGPSQLTAMKAFLESVKDEMALEGVPIVAVSPRTELWLREQESEGGRVFYRRGDSQFRIHPAFESLMDKKEITNARAAFEVCGGTGILAAVSTAIGLDPPMLVFPVGDFITLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLVPTNSAGRGEPLPLDLDAPIGNGGWLVRLVGSRKAAKMWNAAPAAATGGKGGKPLASVQFGDLRSKDRRRGKS 1218
            MVDSTLGVR+ALIGRNSTCKSLFLKAASSSDK LP+TASDAEVWWTSPLAPREADLAHAPEHGFAPSGERLLPAQLN AS ASVLGEE K+SDGD CEQA ADAA  GA EATPAVLMVVGA+++FHKGYPRPNRGGVTPVKAAVSRVRERLGGGQ+PLAVAVSFDVEWDGGPSQ +AMKAFL+SVKDEMALEGVP+VA+SPRTELWLREQESEGGRV YRRGDSQFRIHPAF+SLMDKKEITNARAAF+VCGGTGILAA STAIGLDPP LVFPVGDF+TLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASL PTNSAGR  PLPLDLDAPIGNG WLVRL GSRKAAKMWNAAPAAATGGKGGKPLASVQFGDLRSKDRRRGKS
Sbjct:    1 MVDSTLGVRVALIGRNSTCKSLFLKAASSSDKLLPDTASDAEVWWTSPLAPREADLAHAPEHGFAPSGERLLPAQLNHASVASVLGEESKKSDGDRCEQAVADAARQGADEATPAVLMVVGAEISFHKGYPRPNRGGVTPVKAAVSRVRERLGGGQVPLAVAVSFDVEWDGGPSQSSAMKAFLQSVKDEMALEGVPVVAISPRTELWLREQESEGGRVSYRRGDSQFRIHPAFQSLMDKKEITNARAAFDVCGGTGILAAASTAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRAGPLPLDLDAPIGNGAWLVRLAGSRKAAKMWNAAPAAATGGKGGKPLASVQFGDLRSKDRRRGKS 406
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18398.1 vs. uniprot
Match: A0A836CLS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.790e-25
Identity = 90/227 (39.65%), Postives = 113/227 (49.78%), Query Frame = 1 
Query:  589 IVAVSPRTELWLREQESEGGRVFYRRGDSQF---RIHPAFESLMDKKEITNARAAFEVCGGTGILAAVSTAIGL-DPPM-LVFPVGDFITLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKK--EGILAGELVGAEASLVPTNSAGRGEPLP--------------LDLDAPIGNGGWLVRLVGSRKAAKMWNAAPAAATGGKGGKPLASVQFGDLRSKDRR 1206
            + AVSP  E WL EQ+ EGGR+ +RRG   F    I PAF S++   E   A AA   CGG+GI AA+  A+GL  PP+ LV PVGD  TLQS GW G GAP A LR C  +   ++A  L  + K      L+GELV A A  V  + A                     L  +  IG G  +V +  +R+   MW               L SVQFGDLRSK+R+
Sbjct:   82 VFAVSPWLERWLAEQQ-EGGRLSHRRGSDSFVASAIKPAFASVIPAAEAWRAAAACRACGGSGIPAAIVAAVGLCSPPLTLVLPVGDLATLQSLGWEGVGAPRAALRDCLQVWPGTTAAQLCEILKSPPHERLSGELVQATALSVSWSRAAAXXXXXXXXXXXXXXXVVRQLRSNEAIGAGCHVVAIETTRRPVPMWQGEXXXXXXXXXXAKLPSVQFGDLRSKNRK 307
[Close]
BLAST of mRNA_Ecto-sp6_S_contig92.18398.1 vs. uniprot
Match: A0A7S3R6V4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R6V4_DUNTE)

HSP 1 Score: 63.2 bits (152), Expect = 9.380e-7
Identity = 62/206 (30.10%), Postives = 93/206 (45.15%), Query Frame = 1 
Query:  571 ALEGVPIVAVSPRTELWLREQESEGGRVFYRRGDSQFRIHPAFESLMDKKEITNA-RAAFEVCGGTGILAAVSTAIGLDPPMLVFPVGDFIT--------LQSSGWC---GDGAPV------ATLRTCRLMRRNSSARDLFAVEKKEG--ILAGELVGAEASLVPTNSAGR----GEPLP-----LDLDAPIGNGGWLVRLVGSRK 1101
            AL   P VA+S  +E WL     +G +V Y+       + P  +     +++    R      GGTG L AVSTA+ + PP +VFPVGD  T        + + G     G+ A          LR   LM+  S+  DLF+V  +    +L GE V AEA ++   S+G     G+P       L  D  +G    +VR++ ++K
Sbjct:  881 ALPQEPAVAMSAASERWLATTARKG-QVVYQDAAPSASVAPGCDDASVARQVAELNRRVLGPFGGTGALLAVSTAVAMRPPAVVFPVGDLNTCTALPARTIATGGGLLLGGEDAKARAAEGPTVLRDAVLMKPGSTPADLFSVLVRPPWQLLEGEFVRAEARVLQCGSSGHQGTHGKPSSASRTVLKKDDTLGFSNCVVRIMVNKK 1085
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1F7_9PHAE3.750e-26392.12MMR_HSR1_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CLS2_9STRA7.790e-2539.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3R6V4_DUNTE9.380e-730.10Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:197722..199643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.6
Seed ortholog evalue9.7e-07
Seed eggNOG ortholog2903.EOD08279
Model size1509
KEGG koko:K06942
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008144,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019001,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Exons2
EggNOG free text desc.GTP binding
EggNOG OGsCOG0012@1,KOG1491@2759,KOG2551@1,KOG2551@2759
Ec32 ortholog descriptionUncharacterised GTP-binding protein, C-terminal
Ec32 orthologEc-18_001750.1
Cds size1221
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350560.0269108-UTR-Ecto-sp6_S_contig92:197721..1980091682350560.0269108-UTR-Ecto-sp6_S_contig92:197721..198009Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig92 197722..198009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350560.0365734-CDS-Ecto-sp6_S_contig92:198009..1985461682350560.0365734-CDS-Ecto-sp6_S_contig92:198009..198546Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 198010..198546 -
1682350560.044244-CDS-Ecto-sp6_S_contig92:198959..1996431682350560.044244-CDS-Ecto-sp6_S_contig92:198959..199643Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 198960..199643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18398.1prot_Ecto-sp6_S_contig92.18398.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 198010..199643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18398.1

>prot_Ecto-sp6_S_contig92.18398.1 ID=prot_Ecto-sp6_S_contig92.18398.1|Name=mRNA_Ecto-sp6_S_contig92.18398.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=407bp
MVDSTLGVRIALIGRNSTCKSLFLKAASSSDKPLPNTASDAEVWWTSPLA
PREADLAHAPEHGFAPSGERLLPAQLNQASAASVLGEEGKQSDGDGCEQA
AADAAGPGAGEATPAVLMVVGADMAFHKGYPRPNRGGVTPVKAAVSRVRE
RLGGGQIPLAVAVSFDVEWDGGPSQLTAMKAFLESVKDEMALEGVPIVAV
SPRTELWLREQESEGGRVFYRRGDSQFRIHPAFESLMDKKEITNARAAFE
VCGGTGILAAVSTAIGLDPPMLVFPVGDFITLQSSGWCGDGAPVATLRTC
RLMRRNSSARDLFAVEKKEGILAGELVGAEASLVPTNSAGRGEPLPLDLD
APIGNGGWLVRLVGSRKAAKMWNAAPAAATGGKGGKPLASVQFGDLRSKD
RRRGKS*
back to top

mRNA from alignment at Ecto-sp6_S_contig92:197722..199643-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18398.1 ID=mRNA_Ecto-sp6_S_contig92.18398.1|Name=mRNA_Ecto-sp6_S_contig92.18398.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1922bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:197722..199643- (Ectocarpus species6 EcLAC_371)
ATGGTGGACTCTACGCTGGGCGTCCGCATTGCTCTGATCGGCCGCAATTC
TACTTGCAAGTCTCTCTTCTTGAAAGCAGCGTCCTCTTCTGATAAGCCTC
TGCCGAATACGGCGTCAGATGCGGAAGTATGGTGGACCTCACCACTCGCG
CCTAGAGAAGCCGATCTCGCCCATGCCCCCGAACACGGGTTTGCACCGAG
TGGCGAACGTCTCCTCCCGGCCCAGCTGAACCAGGCATCGGCGGCTAGCG
TGCTCGGCGAGGAAGGCAAGCAAAGCGATGGTGACGGCTGTGAGCAAGCT
GCTGCTGACGCAGCTGGGCCGGGTGCCGGCGAGGCGACACCGGCGGTGCT
GATGGTTGTTGGTGCCGACATGGCGTTTCACAAGGGTTACCCACGACCGA
ACCGCGGAGGGGTGACCCCCGTCAAGGCTGCGGTGTCTCGCGTTCGGGAG
CGCCTCGGAGGTGGCCAGATACCCTTGGCGGTGGCCGTGAGCTTCGATGT
TGAGTGGGACGGCGGGCCGTCACAATTGACGGCAATGAAGGCCTTTCTTG
AGTCGGTAAAGGACGAGATGGCCCTCGAGGGCGTGCCGATTGTCGCAGTA
AGCCCCCGAACAGAGCTTTGGCTGCGCGAACAGGAGAGCGAGGGCGGCAG
GGTATTTTATCGGCGCGGAGATTCTCAATTTCGGGTGGGTTTACGCATCG
TGAATCGGCCTATGCTTTCTTGTCGTATCTCTCTGTTTCTCTCTCGTGTC
CTTGGGAGGCAGACTTGCGCTTTAGTTTCCTCTCGCTGTGTGATCTCCGT
ATTCAGGAGGTGCCACATTTTATTTCAGTACGGAAGAAGGCACATGCTGA
ACATTCTTTTTCAGGGTTGCGAATGCGCCTCAGCTCTTTCATTCACGCGA
CTGTTGTTCTCGCCGTTCAGGGCCCCTAGGCAGCGTTACAACATGGGGCA
CGAAGATGTTGTTCTTTCGCCCCGACTGAATACGTAACCGAAGCCCCACA
ACCGCAGGAATGCCGCTCAAGCAAATCGATGCGAGGACCCTGATAGTCAT
TCATGCCGAACTAAGTGATTTATTCGAACGTTACCTCTCCGGTGCAGATA
CACCCTGCCTTTGAATCACTCATGGACAAGAAGGAGATCACAAACGCCCG
CGCAGCATTCGAAGTTTGCGGAGGAACCGGAATTTTGGCAGCAGTGTCAA
CGGCAATAGGCCTCGACCCTCCGATGCTAGTGTTTCCTGTAGGAGACTTC
ATCACGCTGCAGAGCTCAGGGTGGTGCGGAGACGGCGCACCGGTTGCAAC
GCTACGCACCTGCCGCTTGATGAGAAGGAACTCAAGCGCCCGAGATTTGT
TCGCGGTGGAAAAAAAGGAAGGAATTCTAGCAGGGGAGTTGGTTGGAGCG
GAAGCCTCCTTGGTCCCTACGAATTCAGCAGGACGAGGGGAGCCGTTGCC
GCTCGATCTCGACGCGCCGATCGGCAACGGCGGATGGCTCGTGCGGCTCG
TTGGAAGCCGAAAGGCGGCGAAAATGTGGAACGCCGCTCCAGCTGCGGCC
ACTGGCGGGAAAGGCGGCAAGCCTCTGGCTAGTGTCCAGTTTGGTGATCT
TAGAAGTAAGGATCGGCGACGTGGAAAGTCCTGACGCGAAAAAAGCGGCG
AGTTGCACCAGTCTTTAATGGCCGTTTATGGTGTGATTGAAAGCGTTTCG
GGCTTGTTCAGATGTGGGGAGAGGTTCCTTTTGATCTCATATTTCGTGTT
CACGTTTTTGTTCAGCCCAGCGATGGGTGAAGTTTGTGTTGTGCAACTAA
AGACAGCAGTAGTAGGATTTCTCGAGTAAAAATCGTGCAGGACGAACCAC
ACATGATGAACGGGTGTGAAGGTTGAGGATGTCTCGCGGCCTCTGATGAT
CACGTTTGAGGTTATCCCACTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:197722..199643-

>mRNA_Ecto-sp6_S_contig92.18398.1 ID=mRNA_Ecto-sp6_S_contig92.18398.1|Name=mRNA_Ecto-sp6_S_contig92.18398.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1221bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:197722..199643- (Ectocarpus species6 EcLAC_371)
ATGGTGGACTCTACGCTGGGCGTCCGCATTGCTCTGATCGGCCGCAATTC
TACTTGCAAGTCTCTCTTCTTGAAAGCAGCGTCCTCTTCTGATAAGCCTC
TGCCGAATACGGCGTCAGATGCGGAAGTATGGTGGACCTCACCACTCGCG
CCTAGAGAAGCCGATCTCGCCCATGCCCCCGAACACGGGTTTGCACCGAG
TGGCGAACGTCTCCTCCCGGCCCAGCTGAACCAGGCATCGGCGGCTAGCG
TGCTCGGCGAGGAAGGCAAGCAAAGCGATGGTGACGGCTGTGAGCAAGCT
GCTGCTGACGCAGCTGGGCCGGGTGCCGGCGAGGCGACACCGGCGGTGCT
GATGGTTGTTGGTGCCGACATGGCGTTTCACAAGGGTTACCCACGACCGA
ACCGCGGAGGGGTGACCCCCGTCAAGGCTGCGGTGTCTCGCGTTCGGGAG
CGCCTCGGAGGTGGCCAGATACCCTTGGCGGTGGCCGTGAGCTTCGATGT
TGAGTGGGACGGCGGGCCGTCACAATTGACGGCAATGAAGGCCTTTCTTG
AGTCGGTAAAGGACGAGATGGCCCTCGAGGGCGTGCCGATTGTCGCAGTA
AGCCCCCGAACAGAGCTTTGGCTGCGCGAACAGGAGAGCGAGGGCGGCAG
GGTATTTTATCGGCGCGGAGATTCTCAATTTCGGATACACCCTGCCTTTG
AATCACTCATGGACAAGAAGGAGATCACAAACGCCCGCGCAGCATTCGAA
GTTTGCGGAGGAACCGGAATTTTGGCAGCAGTGTCAACGGCAATAGGCCT
CGACCCTCCGATGCTAGTGTTTCCTGTAGGAGACTTCATCACGCTGCAGA
GCTCAGGGTGGTGCGGAGACGGCGCACCGGTTGCAACGCTACGCACCTGC
CGCTTGATGAGAAGGAACTCAAGCGCCCGAGATTTGTTCGCGGTGGAAAA
AAAGGAAGGAATTCTAGCAGGGGAGTTGGTTGGAGCGGAAGCCTCCTTGG
TCCCTACGAATTCAGCAGGACGAGGGGAGCCGTTGCCGCTCGATCTCGAC
GCGCCGATCGGCAACGGCGGATGGCTCGTGCGGCTCGTTGGAAGCCGAAA
GGCGGCGAAAATGTGGAACGCCGCTCCAGCTGCGGCCACTGGCGGGAAAG
GCGGCAAGCCTCTGGCTAGTGTCCAGTTTGGTGATCTTAGAAGTAAGGAT
CGGCGACGTGGAAAGTCCTGA
back to top