mRNA_Ecto-sp6_S_contig92.18384.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig92.18384.1
Unique NamemRNA_Ecto-sp6_S_contig92.18384.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig92.18384.1 vs. uniprot
Match: D8LF97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF97_ECTSI)

HSP 1 Score: 701 bits (1808), Expect = 8.340e-251
Identity = 385/393 (97.96%), Postives = 387/393 (98.47%), Query Frame = 1 
Query:    1 MSTPDDEEADFTNQLKSGVPVMLHVKVGKLEPGSIQLVDEENEKLVIKTLREGWCSWCYCYNRRYELSPGQLEPVENRTHTMRLNRSTVLLNGGDSHNTASMLRRSLSLLRRHPHPESIDLTFATPKLEESLRLWVHKRLAVVNPASSLPRESSKRVVQALQGLRPSEDSDVETAYSEEQPTPRDLRRSSSAKVWPAQGHLVKRQSSRKAFKSESEQWDQRPGARSVGSTIPEGKGSGSSGSEDGGGASDGSDKAAWAWKAPPVLRRLSVSSXXXXXXXXXXXXXXXXXXXXXSSSVDNADMASGTSAAPLPPSVGSLPPSRCSSLTIGAAAAPAAGKREPERVRSSPDSGARGGDFWDPLGLMNDATLDTPPVKKTLPRRGSARRGRAPQST 1179
            MSTPDDEEADFTNQLKSGVPVMLHVKVGKLEPGSIQLVDEENEKLVIKTLREGWCSWCYCYNRRYELSPGQLEPVENRTHTMRLNRSTVLLNGGDSHNTASMLRRSLSLLRRHPHPESIDLTFATPKLEESLRLWVHKRLAVVNPASSLPRESSKRVVQALQGLRPSEDSDVETAYSEEQPTPRDLRRS SAK+WPAQGHLVKRQSSRKAFKSESEQWD+RP ARSVGSTIPEGKGSGSSG EDGGGASDGSDKAAWAWKAPPVLRRLSVSS  XXXXXXXXXXXXXXXXXXXSSSVDNADMASGTSAAPLPPSVGSLPPSRCSSLTIGAAAAPAAGKREPERVRSS DSGARGGDFWDPLGLMNDATLDTPPVKKTLPRRGSARRGRAPQST
Sbjct:    1 MSTPDDEEADFTNQLKSGVPVMLHVKVGKLEPGSIQLVDEENEKLVIKTLREGWCSWCYCYNRRYELSPGQLEPVENRTHTMRLNRSTVLLNGGDSHNTASMLRRSLSLLRRHPHPESIDLTFATPKLEESLRLWVHKRLAVVNPASSLPRESSKRVVQALQGLRPSEDSDVETAYSEEQPTPRDLRRSGSAKIWPAQGHLVKRQSSRKAFKSESEQWDRRPSARSVGSTIPEGKGSGSSGGEDGGGASDGSDKAAWAWKAPPVLRRLSVSSNRXXXXXXXXXXXXXXXXXXXSSSVDNADMASGTSAAPLPPSVGSLPPSRCSSLTIGAAAAPAAGKREPERVRSSSDSGARGGDFWDPLGLMNDATLDTPPVKKTLPRRGSARRGRAPQST 393
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig92.18384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LF97_ECTSI8.340e-25197.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig92contigEcto-sp6_S_contig92:77187..82513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1434
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004140.1
Cds size1434
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig92.18384.1prot_Ecto-sp6_S_contig92.18384.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig92 77187..82513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350558.1038704-CDS-Ecto-sp6_S_contig92:77186..777961682350558.1038704-CDS-Ecto-sp6_S_contig92:77186..77796Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 77187..77796 -
1682350558.1122568-CDS-Ecto-sp6_S_contig92:77813..782061682350558.1122568-CDS-Ecto-sp6_S_contig92:77813..78206Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 77814..78206 -
1682350558.120245-CDS-Ecto-sp6_S_contig92:78822..789731682350558.120245-CDS-Ecto-sp6_S_contig92:78822..78973Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 78823..78973 -
1682350558.129822-CDS-Ecto-sp6_S_contig92:80000..801281682350558.129822-CDS-Ecto-sp6_S_contig92:80000..80128Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 80001..80128 -
1682350558.1398516-CDS-Ecto-sp6_S_contig92:81216..813201682350558.1398516-CDS-Ecto-sp6_S_contig92:81216..81320Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 81217..81320 -
1682350558.1503224-CDS-Ecto-sp6_S_contig92:82465..825131682350558.1503224-CDS-Ecto-sp6_S_contig92:82465..82513Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig92 82466..82513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig92.18384.1

>prot_Ecto-sp6_S_contig92.18384.1 ID=prot_Ecto-sp6_S_contig92.18384.1|Name=mRNA_Ecto-sp6_S_contig92.18384.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=478bp
MSTPDDEEADFTNQLKSGVPVMLHVKVGKLEPGSIQLVDEENEKLVIKTL
REGWCSWCYCYNRRYELSPGQLEPVENRTHTMRLNRSTVLLNGGDSHNTA
SMLRRSLSLLRRHPHPESIDLTFATPKLEESLRLWVHKRLAVVNPASSLP
RESSKRVVQALQGLRPSEDSDVETAYSEEQPTPRDLRRSSSAKVWPAQGH
LVKRQSSRKAFKSESEQWDQRPGARSVGSTIPEGKGSGSSGSEDGGGASD
GSDKAAWAWKAPPVLRRLSVSSNSSGGGGAAVVSPPPPDTAAGSSSVDNA
DMASGTSAAPLPPSVGSLPPSRCSSLTIGAAAAPAAGKREPERVRSSPDS
GARGGDFWDPLGLMNDATLDTPPVKKTLPRRGSARRGRAPQSTTSTAAAA
AAAAPRPAPPRPRRRKSAGYNRGGGRRKGSRRRRQERPNLAPAGLEEEEE
VAARQGRGEGSPEGDRRERQGVVGKQQ*
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mRNA from alignment at Ecto-sp6_S_contig92:77187..82513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig92.18384.1 ID=mRNA_Ecto-sp6_S_contig92.18384.1|Name=mRNA_Ecto-sp6_S_contig92.18384.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5327bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:77187..82513- (Ectocarpus species6 EcLAC_371)
ATGTCTACACCTGACGATGAAGAGGCAGACTTCACCAACCAGCTCAAGGT
GAGCCGGCGTACAGGAGAAGAGCATACCTTCACCGCAAGAGTGAACACTG
GTAGCGGCTGAGTAGATTCGGTGCTCTCTCTCAAGTAGTAGGCGATGATG
GATGTGTCCTTGACTATGTAGTAATGTAGTGGGTGAAGGGAAGTGTCACA
TCTTGACTTGCATCTCCATTTTCCAGCACTAAATAATAGTTCCCAAAAGT
TTCGAAGAGACACCTCTGAGTGGATATGAACGCGGGTTTGAAATCACCCA
CATGACAAAACTATGGATGGTAAAATGCACAAGCCGACGACCAACCATCG
CAATGGCACGACATACATACGGCATCATGAGATCGATCACCGGGGGTATG
CGTGAAGGGAAGGAGTGCCTTTTCCATACAGCAGTACTGCTGTAGTACTT
GTAGTGCTTCTGTTCTCCTGGGCACAGCATCAATGTTTCGTGCTCGCCCC
AAAAGCTCATGTTGTTTGTAGCTGTCAACTATCCGATGCACTGGGTTCAG
GTTTGAGATGCGCAACCAACACCACCACCACACGAAATCACACATCCCTC
CGCAAATGGGTATCGTCATCGTTGTTGGCGTCGTCGTCGTGTTTTATCAT
GGATTTTGTCGCGACGGAGTGTTTTAAAAGTATGCATGTCATATGTACGT
TGATACTCTTGTGTGGATTACTTTCTGAAAGGGGTCCATGGTGTGTCAGT
GTTGCTGCGTGTGCTGAAAGCATCAAGACATTGCCGAAAAGAAGAGAAAG
TCATAAAGCCGATACATCATTGGAGCCAATGAGCAAAACACGAAATGATA
CTCACAATTCTGCCGCACCCTTAAGCAAACTGCTTTAATGCTGCAACCTG
AGCGAGCACCTCGCCGAATCCTTTCACCAACCACGACCGCTCTTCAACTC
TGTACCTTTTCACCTTTCTTTCCGTTCACCGTGATATTGTAGGATATATA
GTGCCGCATATCATACCCATCAGGTATTAACGTGTTTCACCATTAATATG
TAACACATCGGATGAATCTACAGCAGAAAGTTTGTGCTTGGCGCGTCGGC
ACTCACTCCTGTTTACGCCCTCAACGCGCCATTCCTCTTGTTTCCGGCAC
TGCTGCTGCTGCTGTTGCTTCTGCTACTGCCGTTACCGAACAGAGTGGCG
TTCCGGTCATGCTACATGTGAAGGTTGGGAAGCTCGAACCAGGGTCTATT
CAGCTCGTGGATGAAGAGAACGAGAAGCTCGTCATCAAGACCCTCAGGTG
CGAATCATGGAATCGCACGCTAAGTATTTGATCAAGAAGGCGAAAAGTTG
AAAGAAGATATGGCTGAAAACCACCTCACCTGGCAAACCGTGAAAGACGT
CGATACGACATCTGAACGCTGGTCGGCGGAGTGGTCTCCTCTCCTGTGTA
CACTCTTTCCGATATTTTTGTCGCTCCTTTGATGATAATTCCACAACGGG
TGCTGCTCTCCAGCCAAGAAAGTCCACTTTCGTACTTCAGATTCGCAAAG
AGGATACGGGCAGACTCACGGAGATATGTGTTACAACACCGAAATATGTT
ATAACTAAGTTTAGACTGGAGACGCGATTTCTGTTCCCGAGGCTTTATCG
TTCCTTTGAACGGCTCCAGCGTTGGATCTCCTTCACCAACAGATGGTATA
CTTTTTTTTCTCTTTTTTTCTCTCTTTTTTTCTCTCTTTTTCTGTGCCAG
ATGGCCTTGTCTCTGCTTGCGTTGTGAAGTACCAAGATTGAACCAAGGGG
GTGCACCTCTTTCTCTCCGGCCCATGATAGATAGTGACTGCTAGTCTCAG
TTGATACCTCGCATAGCGCGAAGAGGGAGTGGAGGATTCCAGAATATCTG
TCGTTGATTTCTATTGACTTGCGGACCCCTCGGGGCCAGTTGATTTGAGT
GTACCTTTTTAGGGTAAGTTAACCTGTGACCACGGGAATCGACCGCGTCG
AGTGTTGGATCAGTACGGACATACGAAGGTACTGGGTAGAGAGAGATCGG
AACGGTTTTAATGTGAAGACAACAACAACAACAACAACAACAAATACATG
GAGGTGAGGGGGAAACTCGCCCGCCCCACCCCCCCTGCGCTCTTCAAGGC
TGTTGGTGGGATGAATAGGATGAAGAGCAACCACGGAAGGGATAGCGGAA
GACGGTGATGTACCCTTATGTCTCTCGAGACAACAAGGAATTTACTGCAA
GTCCCTTGTTCGGTGTAGAGTTTTTGCTTAAACAAAGAAGGTTCAACAAC
AGCTCACCGTATCCCCTATCGCCCACATACCCATTGCCTTCGCATCGCCG
ACCTGATGGCGATGCGACCCGCGGCACTGTCGCAGGGAGGGATGGTGCTC
CTGGTGCTACTGCTACAACAGGCGCTACGAGCTCAGCCCGGGGCAGCTGG
AACCTGTCGAGAATAGGACGCACACCATGAGACTCAACCGGTCGACGGTT
CTCCTGAACGGCGGTGAGCGAAGAGTGTCGTGGTATGCCTTCCAGGAGGG
TGTGGTCCGCCTCGAGGATGCGTAAGCAACCCTTACAACACTGCCTCTTC
CTTTCTCGTCTTGGTCTACCGTATATGCAGCTTGTCCCATCTAGAGGGAG
CACGCTTTCTTGCCAACTACAACACCAGTGCCGTAGGTGGCACGTGATAT
CGCGCTTGCTGGACTGATTTTCAAGCCTCCGTTTCTCCACAACAGAAAGA
AAAGAGAGTGGCGAGATGCAGAAAATGGCGGTGTTGGAACCGTCTCGTCG
AAGAAGACACATGATGTCGTTCGGATTAGTCATCTTCTTCGTAGTCGTGG
AGTAGTCGAGCTCCTGAAAATCGGTGCAGGGGGTGTGATACCTTGCGTCA
CCTGCGGCAGCCGGAGTGTACATGATGCTGACACTGCTGTCAATGAGCAC
CCCCCTCTGCACTCCTACCAATAGACGTAGGCAAATTGCCTACCGCAAAT
TGTGCCAGCGATCCACGCCCCCTAGACCGACTTTGCTATTTGCTCGATTG
CTCCACGACGAAGAGGACGCGAAAGCCCGCCGGTAGGCAGAAGGCAAGCC
CTCGACAAGATATTCTCAAAGCCACCCGTTCGGCGGTGGTTCCCCCTCTG
TCCTGGAGTATTAGAACTATGAGAGTCTGTCTTAAGGGGGCGTGCGATCA
CCCCCCACAATTCCGGCAGTCCGATCGCTGGCGGTAGGAGTAACAAATGA
AGCGCTTGGGTCTGCCTGTTGTGTCGGGTAAGCCTGTAGCACTCTGTTTA
GATTACGCGCCATTTGCGCCCTCCTCTTCTCCCGCGTCCCCCAACGTTCT
TCGTCTCGTAACTGTTGTTGTAACCCGCTGTCCATTGTCCCCCCAACCGC
AGCCTGGGTCGGTGAAAACACGTCGTCCCGTCGTAGCGAAGCTATTTTCA
CCACGCACAATTTTGAGTGCTCCCACCCGCCGCCGCCGCCGCCGCCGCCT
GTTATTGTTGTCGTCCATGATGAAACACTTGGTGGAATAGGTGACTCCCA
CAACACCGCCAGCATGCTCCGCCGCAGCCTTAGCCTCCTTCGCCGCCACC
CCCACCCGGAGTCAATCGACCTCACGTTCGCCACACCCAAGCTGGAAGAG
AGCTTGAGGCTTTGGGTGCACAAGAGACTGGCAGTCGTCAAGTAAGCCTG
AGCGAACACGAAATACTAATACTGGCAAGCACGATACACGGGAGAAAAAA
CGCCACCGGAAACAGGCTTGCAGACAATCAACTTTTAGGCGTAGAAGAGA
CGACCAGAAACCGGAGGGGGCATTCACGCGCTCGAGACCAGATAAGAGAG
TTTTCATGCATGCAGCTGGAAATGTAATTTCGCCTCCGTCCGTCCGGGCT
CTGCAAAACGCCCACCAGGTCACCTGTAACATCCAACAGACCTTTTCGAC
ACCCCCACTCGCGCTTACGAAAACAGCAATCGCCGTCTGGAACCTTCCTC
GCCCTGTACTACCGTCCCACCCCCCCCTCCTCCCTTCCCATCTCCGCGCC
TCCCGTTTGGTTAGCCGGGACGCCAATCAACCCATGACATGTCTGGTGTG
CTGCAGCAAACGCAAGGGCTTTTGATCTATCCTTGTGAAACGTAGCTTGG
GCCGGCGAAAACCCGGCATATCGCTCCGTCCGGACTTCGTAGAGATGCGA
GGTCAATACTCTTTAACGATTACGACATGCGTTTACCCCCTCCCCGGTGC
CCCCGATGCCCCCCACCGAACCGCCCACCACAACACGAAAAAAAAAACAT
GGAGCAGTCCAGCATCATCGCTTCCCCGCGAAAGCAGCAAGAGGGTCGTG
CAGGCCCTCCAGGGTCTCCGCCCTTCCGAGGACTCTGACGTGGAGACGGC
GTACTCGGAGGAACAACCAACCCCGAGGGATCTCCGGCGCAGCAGCAGCG
CCAAGGTCTGGCCGGCACAGGGACACCTAGTCAAGCGACAGAGCTCTCGG
AAGGCATTCAAGTCCGAGTCGGAGCAGTGGGACCAACGACCCGGCGCCAG
GAGCGTGGGCTCCACGATCCCCGAGGGAAAGGGTTCCGGTAGCAGCGGCA
GCGAGGACGGCGGCGGAGCCAGCGACGGCAGCGACAAGGCCGCGTGGGCG
TGGAAGGCGCCACCCGTGCTGCGCAGGCTGAGCGTCAGCAGCAACAGCTC
GTCGCGAGGTGGGGGAGGGGGGGGGGGGGCGCCGCCGTCGTGTCGCCCCC
CCCTCCGGACACTGCCGCGGGCAGCAGCAGCGTCGACAACGCGGACATGG
CGTCGGGCACCTCCGCTGCGCCGCTGCCCCCTAGTGTGGGGTCCTTGCCG
CCATCTCGCTGCTCTTCTCTTACGATCGGCGCCGCTGCCGCCCCCGCCGC
CGGGAAGCGGGAGCCTGAAAGGGTCAGGTCTTCCCCCGACTCCGGCGCCC
GCGGCGGCGACTTCTGGGACCCCCTCGGGCTGATGAATGACGCCACGCTG
GACACGCCGCCGGTCAAGAAGACACTGCCCAGGCGTGGGTCGGCGCGCCG
GGGGCGGGCTCCGCAGTCCACCACCAGCACCGCCGCCGCCGCCGCCGCCG
CCGCCCCCCGCCCCGCCCCGCCGCGCCCCCGCCGCCGGAAGAGCGCCGGC
TACAACCGCGGCGGCGGGAGGAGGAAGGGGAGCAGGAGGAGGAGACAGGA
AAGACCGAACCTTGCGCCCGCAGGGCTCGAAGAAGAAGAAGAAGTCGCCG
CAAGGCAAGGCCGCGGCGAAGGAAGCCCCGAAGGTGACCGTCGAGAGCGA
CAAGGAGTAGTAGGCAAACAGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig92:77187..82513-

>mRNA_Ecto-sp6_S_contig92.18384.1 ID=mRNA_Ecto-sp6_S_contig92.18384.1|Name=mRNA_Ecto-sp6_S_contig92.18384.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1434bp|location=Sequence derived from alignment at Ecto-sp6_S_contig92:77187..82513- (Ectocarpus species6 EcLAC_371)
ATGTCTACACCTGACGATGAAGAGGCAGACTTCACCAACCAGCTCAAGAG
TGGCGTTCCGGTCATGCTACATGTGAAGGTTGGGAAGCTCGAACCAGGGT
CTATTCAGCTCGTGGATGAAGAGAACGAGAAGCTCGTCATCAAGACCCTC
AGGGAGGGATGGTGCTCCTGGTGCTACTGCTACAACAGGCGCTACGAGCT
CAGCCCGGGGCAGCTGGAACCTGTCGAGAATAGGACGCACACCATGAGAC
TCAACCGGTCGACGGTTCTCCTGAACGGCGGTGACTCCCACAACACCGCC
AGCATGCTCCGCCGCAGCCTTAGCCTCCTTCGCCGCCACCCCCACCCGGA
GTCAATCGACCTCACGTTCGCCACACCCAAGCTGGAAGAGAGCTTGAGGC
TTTGGGTGCACAAGAGACTGGCAGTCGTCAATCCAGCATCATCGCTTCCC
CGCGAAAGCAGCAAGAGGGTCGTGCAGGCCCTCCAGGGTCTCCGCCCTTC
CGAGGACTCTGACGTGGAGACGGCGTACTCGGAGGAACAACCAACCCCGA
GGGATCTCCGGCGCAGCAGCAGCGCCAAGGTCTGGCCGGCACAGGGACAC
CTAGTCAAGCGACAGAGCTCTCGGAAGGCATTCAAGTCCGAGTCGGAGCA
GTGGGACCAACGACCCGGCGCCAGGAGCGTGGGCTCCACGATCCCCGAGG
GAAAGGGTTCCGGTAGCAGCGGCAGCGAGGACGGCGGCGGAGCCAGCGAC
GGCAGCGACAAGGCCGCGTGGGCGTGGAAGGCGCCACCCGTGCTGCGCAG
GCTGAGCGTCAGCAGCAACAGCTCGGGGGGGGGGGGCGCCGCCGTCGTGT
CGCCCCCCCCTCCGGACACTGCCGCGGGCAGCAGCAGCGTCGACAACGCG
GACATGGCGTCGGGCACCTCCGCTGCGCCGCTGCCCCCTAGTGTGGGGTC
CTTGCCGCCATCTCGCTGCTCTTCTCTTACGATCGGCGCCGCTGCCGCCC
CCGCCGCCGGGAAGCGGGAGCCTGAAAGGGTCAGGTCTTCCCCCGACTCC
GGCGCCCGCGGCGGCGACTTCTGGGACCCCCTCGGGCTGATGAATGACGC
CACGCTGGACACGCCGCCGGTCAAGAAGACACTGCCCAGGCGTGGGTCGG
CGCGCCGGGGGCGGGCTCCGCAGTCCACCACCAGCACCGCCGCCGCCGCC
GCCGCCGCCGCCCCCCGCCCCGCCCCGCCGCGCCCCCGCCGCCGGAAGAG
CGCCGGCTACAACCGCGGCGGCGGGAGGAGGAAGGGGAGCAGGAGGAGGA
GACAGGAAAGACCGAACCTTGCGCCCGCAGGGCTCGAAGAAGAAGAAGAA
GTCGCCGCAAGGCAAGGCCGCGGCGAAGGAAGCCCCGAAGGTGACCGTCG
AGAGCGACAAGGAGTAGTAGGCAAACAGCAGTAG
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