mRNA_Ecto-sp6_S_contig90.18335.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI) HSP 1 Score: 122 bits (305), Expect = 2.630e-30 Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query: 3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTI 275
LPFQGPMIKVI RMTTTLLKFGFVMVVVM GFAMA HVL+ D DSF TFL LF+AMLG+VDFF A +YD SVAT+L VVYLFVVT+
Sbjct: 521 LPFQGPMIKVISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRYD--SVATILFVVYLFVVTV 609
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI) HSP 1 Score: 114 bits (284), Expect = 2.440e-27 Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 3
Query: 3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
L FQGPM++VIFRMT TLL+FG VM+VVMIGF MALHV++ DV+ F T L LFKAMLG+ FF+E + +YD VAT+L+VVYLF+VT+MLLNLL
Sbjct: 858 LQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDEFSGGRYDP--VATILVVVYLFIVTVMLLNLL 952
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.010e-25 Identity = 66/96 (68.75%), Postives = 74/96 (77.08%), Query Frame = 3
Query: 6 PFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
P QGPM VIFRMTT LLKFGFVM VVMIGF MA HVL+ D DSF +FL LFKAM G+ FFN + D YD +VAT+LLVVYL +VTI+LLNLL
Sbjct: 682 PLQGPM--VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDSFGESFLELFKAMFGETTFFNAFSGDTYD--AVATMLLVVYLSIVTILLLNLL 773
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 107 bits (266), Expect = 6.560e-25 Identity = 65/107 (60.75%), Postives = 75/107 (70.09%), Query Frame = 3
Query: 6 PFQGPMI-----------KVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
P QGPMI +V+FRMT LLKFGFVM V+++GF MA HVL+ D DSF +FL LFKAMLGD DFF + D YD VAT LLVVYLF+VT+MLLNLL
Sbjct: 861 PLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFKVFSGDTYDV--VATFLLVVYLFIVTVMLLNLL 965
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE) HSP 1 Score: 104 bits (259), Expect = 5.820e-24 Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = 3
Query: 3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
L F GPM++VIFRMT TLL+FG VM+VVMIGF MALHV + DV F T L LFKAMLG+ F+E + +YD VAT+L+VVYL +VT+MLLNLL
Sbjct: 875 LQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADFGDTLLGLFKAMLGETGIFDEFSGGRYDP--VATILVVVYLCIVTVMLLNLL 969
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.470e-23 Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 3
Query: 3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
L F GPMI+V+F MT L+KFG V++VVM+GFAM+ H L+ DVD+F T L LFKAMLG+VDFF +QYD SVAT L V+YL V+ +MLLNLL
Sbjct: 920 LRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGSFPGNQYD--SVATALFVIYLVVIAVMLLNLL 1014
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 4.750e-21 Identity = 62/112 (55.36%), Postives = 73/112 (65.18%), Query Frame = 3
Query: 6 PFQGPMIK----------------VIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
P QGP+I+ V+FRMT LLKFGFVM V+++GF MA HV + D DSF +FL LFKAMLGD DFF + D YD VAT LLVV LF+VT+MLLNLL
Sbjct: 130 PLQGPIIQASGEFRQVAKRNVSHSVVFRMTRILLKFGFVMAVILLGFIMAFHVQFRDFDSFGESFLDLFKAMLGDNDFFKVFSGDTYDF--VATFLLVVGLFIVTVMLLNLL 239
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.600e-15 Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 3
Query: 3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
LP QGPMI+V+F MT L KFG +M++VM+GF + + LY + ++ + A+F+A LG+ D+ ++ + +D VATVLLVVYL ++TIM+LNLL
Sbjct: 1238 LPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDDFSGTTFDG--VATVLLVVYLVLLTIMMLNLL 1332
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 3.530e-15 Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = 3
Query: 3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
LP QGP+I+V+F MT L KFG +M++VM+GF + + LY + ++ + A+F+A LG+ D+F++ + +D VAT LLVVYL ++TIM+LNLL
Sbjct: 993 LPSQGPIIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTTYGVVWKAIFRATLGETDYFDDFSGTTFDG--VATALLVVYLVLLTIMMLNLL 1087
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 3.210e-12 Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 3
Query: 12 QGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFF 194
+G VIF MT L++FG VM+VVM+GFAM+LHVL D SF TF+ALFKA LGDVD+F
Sbjct: 310 EGIAAAVIFAMTAQLVRFGIVMLVVMVGFAMSLHVLIRDSKSFGETFVALFKATLGDVDYF 370 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig90.18335.1 >prot_Ecto-sp6_S_contig90.18335.1 ID=prot_Ecto-sp6_S_contig90.18335.1|Name=mRNA_Ecto-sp6_S_contig90.18335.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=91bp MIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAback to top mRNA from alignment at Ecto-sp6_S_contig90:322359..322977- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig90.18335.1 ID=mRNA_Ecto-sp6_S_contig90.18335.1|Name=mRNA_Ecto-sp6_S_contig90.18335.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=619bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:322359..322977- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig90:322359..322977- >mRNA_Ecto-sp6_S_contig90.18335.1 ID=mRNA_Ecto-sp6_S_contig90.18335.1|Name=mRNA_Ecto-sp6_S_contig90.18335.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:322359..322977- (Ectocarpus species6 EcLAC_371)back to top |