mRNA_Ecto-sp6_S_contig90.18335.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig90.18335.1
Unique NamemRNA_Ecto-sp6_S_contig90.18335.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.630e-30
Identity = 69/91 (75.82%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTI 275
            LPFQGPMIKVI RMTTTLLKFGFVMVVVM GFAMA HVL+ D DSF  TFL LF+AMLG+VDFF   A  +YD  SVAT+L VVYLFVVT+
Sbjct:  521 LPFQGPMIKVISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRYD--SVATILFVVYLFVVTV 609          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.440e-27
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = 3
Query:    3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
            L FQGPM++VIFRMT TLL+FG VM+VVMIGF MALHV++ DV+ F  T L LFKAMLG+  FF+E +  +YD   VAT+L+VVYLF+VT+MLLNLL
Sbjct:  858 LQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDEFSGGRYDP--VATILVVVYLFIVTVMLLNLL 952          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.010e-25
Identity = 66/96 (68.75%), Postives = 74/96 (77.08%), Query Frame = 3
Query:    6 PFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
            P QGPM  VIFRMTT LLKFGFVM VVMIGF MA HVL+ D DSF  +FL LFKAM G+  FFN  + D YD  +VAT+LLVVYL +VTI+LLNLL
Sbjct:  682 PLQGPM--VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDSFGESFLELFKAMFGETTFFNAFSGDTYD--AVATMLLVVYLSIVTILLLNLL 773          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.560e-25
Identity = 65/107 (60.75%), Postives = 75/107 (70.09%), Query Frame = 3
Query:    6 PFQGPMI-----------KVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
            P QGPMI           +V+FRMT  LLKFGFVM V+++GF MA HVL+ D DSF  +FL LFKAMLGD DFF   + D YD   VAT LLVVYLF+VT+MLLNLL
Sbjct:  861 PLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFKVFSGDTYDV--VATFLLVVYLFIVTVMLLNLL 965          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.820e-24
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
            L F GPM++VIFRMT TLL+FG VM+VVMIGF MALHV + DV  F  T L LFKAMLG+   F+E +  +YD   VAT+L+VVYL +VT+MLLNLL
Sbjct:  875 LQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADFGDTLLGLFKAMLGETGIFDEFSGGRYDP--VATILVVVYLCIVTVMLLNLL 969          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.470e-23
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
            L F GPMI+V+F MT  L+KFG V++VVM+GFAM+ H L+ DVD+F  T L LFKAMLG+VDFF     +QYD  SVAT L V+YL V+ +MLLNLL
Sbjct:  920 LRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGSFPGNQYD--SVATALFVIYLVVIAVMLLNLL 1014          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.750e-21
Identity = 62/112 (55.36%), Postives = 73/112 (65.18%), Query Frame = 3
Query:    6 PFQGPMIK----------------VIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
            P QGP+I+                V+FRMT  LLKFGFVM V+++GF MA HV + D DSF  +FL LFKAMLGD DFF   + D YD   VAT LLVV LF+VT+MLLNLL
Sbjct:  130 PLQGPIIQASGEFRQVAKRNVSHSVVFRMTRILLKFGFVMAVILLGFIMAFHVQFRDFDSFGESFLDLFKAMLGDNDFFKVFSGDTYDF--VATFLLVVGLFIVTVMLLNLL 239          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-15
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 3
Query:    3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
            LP QGPMI+V+F MT  L KFG +M++VM+GF  + + LY +  ++   + A+F+A LG+ D+ ++ +   +D   VATVLLVVYL ++TIM+LNLL
Sbjct: 1238 LPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDDFSGTTFDG--VATVLLVVYLVLLTIMMLNLL 1332          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.530e-15
Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = 3
Query:    3 LPFQGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL 293
            LP QGP+I+V+F MT  L KFG +M++VM+GF  + + LY +  ++   + A+F+A LG+ D+F++ +   +D   VAT LLVVYL ++TIM+LNLL
Sbjct:  993 LPSQGPIIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTTYGVVWKAIFRATLGETDYFDDFSGTTFDG--VATALLVVYLVLLTIMMLNLL 1087          
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.210e-12
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 3
Query:   12 QGPMIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKAMLGDVDFF 194
            +G    VIF MT  L++FG VM+VVM+GFAM+LHVL  D  SF  TF+ALFKA LGDVD+F
Sbjct:  310 EGIAAAVIFAMTAQLVRFGIVMLVVMVGFAMSLHVLIRDSKSFGETFVALFKATLGDVDYF 370          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig90.18335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G6K7_ECTSI2.630e-3075.82Transient Receptor Potential Channel. C terminally... [more]
D7FZR6_ECTSI2.440e-2765.98Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JG42_9PHAE1.010e-2568.75Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJG3_9PHAE6.560e-2560.75Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KBU4_9PHAE5.820e-2462.89Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FLB1_ECTSI1.470e-2360.82Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JUV2_9PHAE4.750e-2155.36Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5LDE6_9PHAE2.600e-1547.42Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LT30_ECTSI3.530e-1546.39Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JCX0_9PHAE3.210e-1262.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig90contigEcto-sp6_S_contig90:322359..322977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score103.2
Seed ortholog evalue6.5e-20
Seed eggNOG ortholog2880.D7FZR6
Model size295
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.ion channel activity
EggNOG OGsKOG3614@1,KOG3614@2759
EC2.7.11.1
Cds size273
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350552.3122797-CDS-Ecto-sp6_S_contig90:322358..3226221682350552.3122797-CDS-Ecto-sp6_S_contig90:322358..322622Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 322359..322622 -
1682350552.324927-CDS-Ecto-sp6_S_contig90:322948..3229571682350552.324927-CDS-Ecto-sp6_S_contig90:322948..322957Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 322949..322957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350552.336526-UTR-Ecto-sp6_S_contig90:322957..3229771682350552.336526-UTR-Ecto-sp6_S_contig90:322957..322977Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 322958..322977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig90.18335.1prot_Ecto-sp6_S_contig90.18335.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig90 322359..322957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig90.18335.1

>prot_Ecto-sp6_S_contig90.18335.1 ID=prot_Ecto-sp6_S_contig90.18335.1|Name=mRNA_Ecto-sp6_S_contig90.18335.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=91bp
MIKVIFRMTTTLLKFGFVMVVVMIGFAMALHVLYHDVDSFCTTFLALFKA
MLGDVDFFNEIATDQYDNDSVATVLLVVYLFVVTIMLLNLL
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mRNA from alignment at Ecto-sp6_S_contig90:322359..322977-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig90.18335.1 ID=mRNA_Ecto-sp6_S_contig90.18335.1|Name=mRNA_Ecto-sp6_S_contig90.18335.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=619bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:322359..322977- (Ectocarpus species6 EcLAC_371)
TTCTTCCTTTTCAGGGCCCGATGATCAAGGTAGGTTTCAAGATACACAGA TTGTTAGGATAGAGGGGCTATCCCCTACTCTAAGGCCGAAGGAGCCAGCG CTGACTACCTTTTTTGTTAGGGATAGCCCCCCTGCACAGCCGTGCTATTG ATGCCGAAAGTGCTTTGATGCCACATGATCGACTTTCGTAGATACGTTTT CCGCATGACATGCGGATTTCTTTTTCATCGGAAGCTTTGAAGGTGAGGCG GCTTCAGCAATTATACACGTCCTGCAACAGCCAGTCGTCAGTTCGAGTAC ACTATTGATTCGACGAGTGACTGAGCAGTGTAATCCACGTCGTTGTGACC CACAGGTGATATTCCGCATGACGACAACTCTCCTCAAGTTTGGGTTCGTG ATGGTGGTCGTGATGATCGGGTTCGCGATGGCTCTCCACGTTCTTTATCA TGACGTCGATAGCTTTTGCACGACATTCCTTGCCCTTTTCAAGGCAATGC TTGGCGATGTCGACTTCTTCAACGAAATCGCCACTGACCAGTACGACAAT GACAGTGTGGCAACCGTTCTGCTCGTGGTGTACCTATTCGTCGTCACGAT AATGCTCCTGAACCTCTTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig90:322359..322977-

>mRNA_Ecto-sp6_S_contig90.18335.1 ID=mRNA_Ecto-sp6_S_contig90.18335.1|Name=mRNA_Ecto-sp6_S_contig90.18335.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:322359..322977- (Ectocarpus species6 EcLAC_371)
ATGATCAAGGTGATATTCCGCATGACGACAACTCTCCTCAAGTTTGGGTT
CGTGATGGTGGTCGTGATGATCGGGTTCGCGATGGCTCTCCACGTTCTTT
ATCATGACGTCGATAGCTTTTGCACGACATTCCTTGCCCTTTTCAAGGCA
ATGCTTGGCGATGTCGACTTCTTCAACGAAATCGCCACTGACCAGTACGA
CAATGACAGTGTGGCAACCGTTCTGCTCGTGGTGTACCTATTCGTCGTCA
CGATAATGCTCCTGAACCTCTTG
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