mRNA_Ecto-sp6_S_contig90.18326.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig90.18326.1
Unique NamemRNA_Ecto-sp6_S_contig90.18326.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.740e-38
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
            VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGR DSVAT+LFVVY  VVTV
Sbjct:  530 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRYDSVATILFVVYLFVVTV 609          
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 8.270e-25
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
            VI RMTT LLKFGFVM VVM GF MAFHVLFRDFDSFG +FL LF+AM GE  FF  F+G   D+VATML VVY  +VT+
Sbjct:  688 VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDSFGESFLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTI 767          
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.000e-23
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
            V+ RMT  LLKFGFVM V++ GF MAFHVLFRDFDSFG +FL LF+AMLG+ DFF+ F+G   D VAT L VVY  +VTV
Sbjct:  880 VVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFKVFSGDTYDVVATFLLVVYLFIVTV 959          
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 8.850e-23
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
            VI RMT TLL+FG VM+VVM GF MA HV+FRD + FG T LGLF+AMLGE  FF+ F+GGR D VAT+L VVY  +VTV
Sbjct:  867 VIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDEFSGGRYDPVATILVVVYLFIVTV 946          
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.310e-21
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
            V+ RMT  LLKFGFVM V++ GF MAFHV FRDFDSFG +FL LF+AMLG+ DFF+ F+G   D VAT L VV   +VTV
Sbjct:  154 VVFRMTRILLKFGFVMAVILLGFIMAFHVQFRDFDSFGESFLDLFKAMLGDNDFFKVFSGDTYDFVATFLLVVGLFIVTV 233          
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.400e-20
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
            V+  MT  L+KFG V++VVM GFAM+FH LF D D+FG T L LF+AMLGEVDFF +F G + DSVAT LFV+Y +V+ V
Sbjct:  929 VVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGSFPGNQYDSVATALFVIYLVVIAV 1008          
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.110e-11
Identity = 34/80 (42.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
            V+  MT  L KFG +M++VM GF  +F+ L+++  ++G+ +  +FRA LGE D+F+ F+G   D VAT L VVY +++T+
Sbjct: 1002 VMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTTYGVVWKAIFRATLGETDYFDDFSGTTFDGVATALLVVYLVLLTI 1081          
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.030e-11
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFF 165
            VI  MT  L++FG VM+VVM GFAM+ HVL RD  SFG TF+ LF+A LG+VD+F
Sbjct:  316 VIFAMTAQLVRFGIVMLVVMVGFAMSLHVLIRDSKSFGETFVALFKATLGDVDYF 370          
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.890e-11
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
            V+  MT  L KFG +M++VM GF  +F+ L+++  ++G  +  +FRA LGE D+ + F+G   D VAT+L VVY +++T+
Sbjct: 1247 VMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDDFSGTTFDGVATVLLVVYLVLLTI 1326          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G6K7_ECTSI2.740e-3895.00Transient Receptor Potential Channel. C terminally... [more]
A0A6H5JG42_9PHAE8.270e-2570.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJG3_9PHAE1.000e-2366.25Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
D7FZR6_ECTSI8.850e-2366.25Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JUV2_9PHAE3.310e-2163.75Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
D7FLB1_ECTSI2.400e-2061.25Ankyrin Repeat Transient Receptor Potential Channe... [more]
D8LT30_ECTSI1.110e-1142.50Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JCX0_9PHAE7.030e-1161.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDE6_9PHAE9.890e-1141.25Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig90contigEcto-sp6_S_contig90:148748..148987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score97.8
Seed ortholog evalue2.3e-18
Seed eggNOG ortholog2880.D8LPZ1
Model size240
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Cds size228
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350551.277586-UTR-Ecto-sp6_S_contig90:148747..1487591682350551.277586-UTR-Ecto-sp6_S_contig90:148747..148759Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig90 148748..148759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350551.2880065-CDS-Ecto-sp6_S_contig90:148759..1489871682350551.2880065-CDS-Ecto-sp6_S_contig90:148759..148987Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig90 148760..148987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig90.18326.1prot_Ecto-sp6_S_contig90.18326.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig90 148760..148987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig90.18326.1

>prot_Ecto-sp6_S_contig90.18326.1 ID=prot_Ecto-sp6_S_contig90.18326.1|Name=mRNA_Ecto-sp6_S_contig90.18326.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=76bp
MTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDF
FETFAGGRNDSVATMLFVVYRLVVTV
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mRNA from alignment at Ecto-sp6_S_contig90:148748..148987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig90.18326.1 ID=mRNA_Ecto-sp6_S_contig90.18326.1|Name=mRNA_Ecto-sp6_S_contig90.18326.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:148748..148987+ (Ectocarpus species6 EcLAC_371)
GTGATATCCCGCATGACGACAACTCTGCTCAAGTTCGGGTTCGTGATGGT GGTCGTCATGACTGGGTTCGCAATGGCCTTCCACGTCCTCTTTCGCGACT TCGATAGCTTTGGTATGACATTCCTCGGCCTTTTTCGGGCAATGCTTGGC GAGGTCGACTTCTTCGAGACGTTCGCCGGCGGACGGAATGACAGTGTGGC AACCATGCTGTTTGTGGTTTACCGGCTCGTCGTCACGGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig90:148748..148987+

>mRNA_Ecto-sp6_S_contig90.18326.1 ID=mRNA_Ecto-sp6_S_contig90.18326.1|Name=mRNA_Ecto-sp6_S_contig90.18326.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:148748..148987+ (Ectocarpus species6 EcLAC_371)
ATGACGACAACTCTGCTCAAGTTCGGGTTCGTGATGGTGGTCGTCATGAC
TGGGTTCGCAATGGCCTTCCACGTCCTCTTTCGCGACTTCGATAGCTTTG
GTATGACATTCCTCGGCCTTTTTCGGGCAATGCTTGGCGAGGTCGACTTC
TTCGAGACGTTCGCCGGCGGACGGAATGACAGTGTGGCAACCATGCTGTT
TGTGGTTTACCGGCTCGTCGTCACGGTC
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