mRNA_Ecto-sp6_S_contig90.18326.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI) HSP 1 Score: 143 bits (360), Expect = 2.740e-38 Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGR DSVAT+LFVVY VVTV
Sbjct: 530 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRYDSVATILFVVYLFVVTV 609
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE) HSP 1 Score: 105 bits (263), Expect = 8.270e-25 Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
VI RMTT LLKFGFVM VVM GF MAFHVLFRDFDSFG +FL LF+AM GE FF F+G D+VATML VVY +VT+
Sbjct: 688 VIFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDSFGESFLELFKAMFGETTFFNAFSGDTYDAVATMLLVVYLSIVTI 767
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.000e-23 Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
V+ RMT LLKFGFVM V++ GF MAFHVLFRDFDSFG +FL LF+AMLG+ DFF+ F+G D VAT L VVY +VTV
Sbjct: 880 VVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFKVFSGDTYDVVATFLLVVYLFIVTV 959
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI) HSP 1 Score: 100 bits (248), Expect = 8.850e-23 Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
VI RMT TLL+FG VM+VVM GF MA HV+FRD + FG T LGLF+AMLGE FF+ F+GGR D VAT+L VVY +VTV
Sbjct: 867 VIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDEFSGGRYDPVATILVVVYLFIVTV 946
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 3.310e-21 Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
V+ RMT LLKFGFVM V++ GF MAFHV FRDFDSFG +FL LF+AMLG+ DFF+ F+G D VAT L VV +VTV
Sbjct: 154 VVFRMTRILLKFGFVMAVILLGFIMAFHVQFRDFDSFGESFLDLFKAMLGDNDFFKVFSGDTYDFVATFLLVVGLFIVTV 233
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 2.400e-20 Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
V+ MT L+KFG V++VVM GFAM+FH LF D D+FG T L LF+AMLGEVDFF +F G + DSVAT LFV+Y +V+ V
Sbjct: 929 VVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGSFPGNQYDSVATALFVIYLVVIAV 1008
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 1.110e-11 Identity = 34/80 (42.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
V+ MT L KFG +M++VM GF +F+ L+++ ++G+ + +FRA LGE D+F+ F+G D VAT L VVY +++T+
Sbjct: 1002 VMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTTYGVVWKAIFRATLGETDYFDDFSGTTFDGVATALLVVYLVLLTI 1081
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 7.030e-11 Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFF 165
VI MT L++FG VM+VVM GFAM+ HVL RD SFG TF+ LF+A LG+VD+F
Sbjct: 316 VIFAMTAQLVRFGIVMLVVMVGFAMSLHVLIRDSKSFGETFVALFKATLGDVDYF 370
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 9.890e-11 Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 1 VISRMTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFFETFAGGRNDSVATMLFVVYRLVVTV 240
V+ MT L KFG +M++VM GF +F+ L+++ ++G + +FRA LGE D+ + F+G D VAT+L VVY +++T+
Sbjct: 1247 VMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDDFSGTTFDGVATVLLVVYLVLLTI 1326 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig90.18326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig90.18326.1 >prot_Ecto-sp6_S_contig90.18326.1 ID=prot_Ecto-sp6_S_contig90.18326.1|Name=mRNA_Ecto-sp6_S_contig90.18326.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=76bp MTTTLLKFGFVMVVVMTGFAMAFHVLFRDFDSFGMTFLGLFRAMLGEVDFback to top mRNA from alignment at Ecto-sp6_S_contig90:148748..148987+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig90.18326.1 ID=mRNA_Ecto-sp6_S_contig90.18326.1|Name=mRNA_Ecto-sp6_S_contig90.18326.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:148748..148987+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig90:148748..148987+ >mRNA_Ecto-sp6_S_contig90.18326.1 ID=mRNA_Ecto-sp6_S_contig90.18326.1|Name=mRNA_Ecto-sp6_S_contig90.18326.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp6_S_contig90:148748..148987+ (Ectocarpus species6 EcLAC_371)back to top |