mRNA_Ecto-sp6_S_contig9.18315.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18315.1
Unique NamemRNA_Ecto-sp6_S_contig9.18315.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: D7FV81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV81_ECTSI)

HSP 1 Score: 598 bits (1542), Expect = 1.690e-213
Identity = 314/327 (96.02%), Postives = 316/327 (96.64%), Query Frame = 3 
Query:   96 HTAHVLAIALLLVFPIPTGTANVYLRNCCGLLKLVLNLEAGVCVRRCAGQVKAHMPRGGGGAGSSSGSKGAAPLGKQDAFNEAQTAMMAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATARTAKXXXXXXXXXXXSSEPARKKTK 1076
            HT H   + LLLVFPIPTGT NVYLRNCCGLLKLVLNLEAGVCVRRCAGQV+AHMPRGGGGAGSSSGSKGAAPLGKQDAFNEAQTAM AQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATARTA   XXXXXXXX SSEPARKKTK
Sbjct:   32 HTRHT-CLPLLLVFPIPTGTVNVYLRNCCGLLKLVLNLEAGVCVRRCAGQVEAHMPRGGGGAGSSSGSKGAAPLGKQDAFNEAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATARTANAAXXXXXXXXSSSEPARKKTK 357
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BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: A0A1D2AC59_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AC59_AUXPR)

HSP 1 Score: 196 bits (498), Expect = 2.960e-57
Identity = 101/189 (53.44%), Postives = 134/189 (70.90%), Query Frame = 3 
Query:  414 NVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVL 980
            NV AT +++C +DLK + +RARNAEYNPKRF+A I+R+    EPK+TAL+F +GK+V TG++S      A + +ARIL KL+N            + ++ ++QNMV + DV FPIRLEGL AS+   FC+YEPELFPGLIYRM DPKI  LIFVSGKVVLTGAK  +++   F+ +YP L +FKK  +L
Sbjct:   28 NVVATVNLECKLDLKDIALRARNAEYNPKRFAAVIMRI---REPKSTALIFASGKMVCTGAKSEQESRLAARKYARILQKLENPV----------IFKEFKIQNMVGSCDVRFPIRLEGL-ASSHSVFCSYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKRREEIYQAFENIYPVLKEFKKGGLL 202
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: A0A2P6VMN0_9CHLO (TATA-box-binding 2 n=2 Tax=Chlorella clade TaxID=2511126 RepID=A0A2P6VMN0_9CHLO)

HSP 1 Score: 192 bits (487), Expect = 1.460e-55
Identity = 99/189 (52.38%), Postives = 133/189 (70.37%), Query Frame = 3 
Query:  414 NVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVL 980
            NV AT +++C +DLK + + ARNAEYNPKRF+A I+R+    EPK+TAL+F +GK+V TG++S A    A + +A+IL KL       S+ ++F   ++ ++QNMV + DV FPIRLEGL AS    FC+YEPELFPGLIYRM DPKI  LIFVSGKVVLTGAK  + +   F+ +YP L  F+K  ++
Sbjct:   32 NVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRI---REPKSTALIFHSGKMVCTGTKSEAEARTASRKYAKILQKL-------SYSVSF---KEFKIQNMVGSCDVKFPIRLEGL-ASTHAMFCSYEPELFPGLIYRMADPKIVLLIFVSGKVVLTGAKKREDIYRAFESIYPVLQTFRKGGMI 206
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BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: A0A5J4XYK7_9CHLO (TATA-box-binding 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XYK7_9CHLO)

HSP 1 Score: 193 bits (491), Expect = 1.860e-55
Identity = 102/202 (50.50%), Postives = 139/202 (68.81%), Query Frame = 3 
Query:  405 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATARTA 1010
            ++ N+ AT ++ C +DLKT+ ++ARNAEYNPKRF+A IIR+    EPK TALVF +GK+VVTG++S  + + A K FA+I+ + D          +    +D ++QN+V + DV FPIRLEGL  ++ G F +YEPELFPGLIYRMK PKI  LIFVSGKVVLTGAK  +++   F+++YPTL  F+K  V  Q S   + A
Sbjct:   39 TLQNIVATVNLSCKLDLKTIALKARNAEYNPKRFAAVIIRI---REPKTTALVFASGKMVVTGAKSEKNSETAAKKFAKIVKQCDFPDVKFQASADLLAHQDFKLQNIVGSCDVKFPIRLEGLAYAH-GLFSSYEPELFPGLIYRMKVPKIVLLIFVSGKVVLTGAKFKEEIYQAFEQIYPTLGIFRKGDVPPQGSGAPQAA 236
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BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: A0A2G2YW92_CAPAN (TATA-box-binding protein n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G2YW92_CAPAN)

HSP 1 Score: 189 bits (479), Expect = 5.610e-55
Identity = 94/191 (49.21%), Postives = 132/191 (69.11%), Query Frame = 3 
Query:  405 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATV 977
            ++ N+ +T ++ C +DLK + ++A+NAEYNPKRF A I+R+    EPK TAL+F TGKVVVTG+++     YA + +ARI+ K+    G     + F   +D ++QN+VA+ DVGFPIRLEGL  ++ G F +YEPE+FPGLIYRMK PKI  L+F SGK+V+TGAK  + +   F  +YP L QF K T+
Sbjct:   12 TLQNIASTVNLDCKLDLKGIALQAQNAEYNPKRFPAVIMRV---KEPKTTALIFATGKVVVTGAKNEGDAKYAARKYARIVQKIGCHLG-----VKF---KDFKIQNIVASCDVGFPIRLEGLALAH-GAFSSYEPEIFPGLIYRMKQPKIVMLVFTSGKIVITGAKVREDIYTAFDSIYPVLTQFSKKTL 190
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BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: A0A7J7ISE2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ISE2_9RHOD)

HSP 1 Score: 190 bits (482), Expect = 9.470e-55
Identity = 97/191 (50.79%), Postives = 131/191 (68.59%), Query Frame = 3 
Query:  399 KLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKA 971
            ++ + NV AT ++ C +DL+ + MRARNAEYNPKRF+A I+R+    +PK TAL+F TGKVV+TG+RS      A + +A+I+ KL          + F    D  + N+VA+ DV FPIRLE L  ++   + +YEPELFPGL+YRM +PK+  LIFVSGKVV+TGAKS   L D F+K+YP LCQF+KA
Sbjct:   40 EVKLQNVVATVNLVCPLDLRHIAMRARNAEYNPKRFAAVIMRI---RDPKTTALIFSTGKVVITGARSEEDARLAARKYAKIVRKLGY------EDVKF---ADFGLHNLVASADVRFPIRLEALAHAHSN-YAHYEPELFPGLVYRMLEPKLALLIFVSGKVVITGAKSRDDLNDAFQKLYPVLCQFRKA 217
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: A0A2T0FKA1_9ASCO (TATA-box-binding protein n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FKA1_9ASCO)

HSP 1 Score: 189 bits (481), Expect = 1.080e-54
Identity = 99/189 (52.38%), Postives = 132/189 (69.84%), Query Frame = 3 
Query:  405 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKA 971
            ++ N+ AT ++ C +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+VVTG++S      A + +ARI+ KL     G + K       D ++QN+V + DV FPIRLEGL A N G F +YEPELFPGLIYRM  PKI  LIFVSGK+VLTGAK  Q++ D F+ +YP L +F+K+
Sbjct:   59 TLQNIVATVNLACRLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVVTGAKSEDDSRLASRKYARIIQKL-----GFNAKFT-----DFKIQNIVGSCDVKFPIRLEGL-AFNHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQRQEIYDAFENIYPVLSEFRKS 233
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BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: A0A7R9TBJ0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TBJ0_9VIRI)

HSP 1 Score: 190 bits (483), Expect = 1.420e-54
Identity = 103/210 (49.05%), Postives = 140/210 (66.67%), Query Frame = 3 
Query:  339 EAQTAMMAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKK 968
            +A TA  A  +   ++       + N+ AT +M C +DL  + + ARNAEYNPKRFSA I+R+   +EPK TAL+F +GK+VVTG++S A    + K +ARI+ KL         K+NF   +D ++QN+V + DV FPIRLEG+  S+   F NYEPELFPGLIYRM+ PKI  LIFVSGKVVLTGAKS +++   F+ +YP L +F+K
Sbjct:   67 KAPTAAAAPAVDLTKHPSGIVPKLQNLVATVNMDCKLDLHKIALTARNAEYNPKRFSAVILRI---HEPKTTALIFHSGKMVVTGAKSEADARTSAKKYARIVQKL-------GFKVNF---KDFKIQNIVGSCDVKFPIRLEGISLSHSH-FSNYEPELFPGLIYRMRSPKIVLLIFVSGKVVLTGAKSRKEIYTAFEAIYPVLNEFRK 262
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: UPI001CB922F7 (TATA-box-binding protein-like isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB922F7)

HSP 1 Score: 188 bits (477), Expect = 1.630e-54
Identity = 94/188 (50.00%), Postives = 133/188 (70.74%), Query Frame = 3 
Query:  405 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKK 968
            ++ N+ +T +++C +DLK++ ++ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+V TG++S     +A + +ARI+ KL N +            +D ++QN+VA+ DV FPIRLEGL  S+ G F +YEPELFPGLIYRMK PKI  LIFVSGK+VLTGAK  ++    F+ +YP L +F+K
Sbjct:   25 TLQNIVSTVNLECKLDLKSIALQARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVCTGAKSEEQSRHAARKYARIIQKLGNAA----------KFKDFKIQNIVASCDVKFPIRLEGLAYSH-GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRK 198
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Match: A0A507CSA2_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CSA2_9FUNG)

HSP 1 Score: 189 bits (480), Expect = 1.820e-54
Identity = 99/185 (53.51%), Postives = 131/185 (70.81%), Query Frame = 3 
Query:  414 NVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKK 968
            N+ AT +++  +DLKT+ + ARNAEYNPKRF+A I+R+    +PK TAL+F +GK+VVTG++S     YA + +ARI+ KL    G  + K       + ++QN+V + DV FPIRLEGL A+    F NYEPELFPGLIYRM DPKI  LIFVSGKVVLTGAK+ +Q+ D F+K+YP L  F+K
Sbjct:   67 NIVATVNLEVRLDLKTIALHARNAEYNPKRFAAVIMRI---RDPKTTALIFASGKMVVTGAKSEEQSRYAARKYARIIQKL----GFQAAKFT-----EFKIQNIVGSCDVKFPIRLEGL-ANAHSTFANYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKTREQIYDAFEKIYPVLTGFRK 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV81_ECTSI1.690e-21396.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1D2AC59_AUXPR2.960e-5753.44Uncharacterized protein n=3 Tax=Auxenochlorella pr... [more]
A0A2P6VMN0_9CHLO1.460e-5552.38TATA-box-binding 2 n=2 Tax=Chlorella clade TaxID=2... [more]
A0A5J4XYK7_9CHLO1.860e-5550.50TATA-box-binding 1 n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A2G2YW92_CAPAN5.610e-5549.21TATA-box-binding protein n=4 Tax=Capsicum TaxID=40... [more]
A0A7J7ISE2_9RHOD9.470e-5550.79Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A2T0FKA1_9ASCO1.080e-5452.38TATA-box-binding protein n=1 Tax=Wickerhamiella so... [more]
A0A7R9TBJ0_9VIRI1.420e-5449.05Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
UPI001CB922F71.630e-5450.00TATA-box-binding protein-like isoform X1 n=2 Tax=E... [more]
A0A507CSA2_9FUNG1.820e-5453.51Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2964706..2969717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score513.1
Seed ortholog evalue8.2e-143
Seed eggNOG ortholog2880.D7FV81
Model size1193
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000126,GO:0000428,GO:0000976,GO:0000977,GO:0000979,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000995,GO:0001012,GO:0001016,GO:0001046,GO:0001047,GO:0001067,GO:0001075,GO:0001085,GO:0001091,GO:0001092,GO:0001098,GO:0001099,GO:0001102,GO:0001134,GO:0001179,GO:0001186,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005672,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006359,GO:0006360,GO:0006366,GO:0006367,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022607,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0090576,GO:0097159,GO:0097659,GO:0097718,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141
Exons6
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
Ec32 ortholog descriptionBeta2-adaptin/TBP, C-terminal domain
Ec32 orthologEc-14_000120.1
Cds size825
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18315.1prot_Ecto-sp6_S_contig9.18315.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2965400..2967843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350550.475452-UTR-Ecto-sp6_S_contig9:2964705..29648081682350550.475452-UTR-Ecto-sp6_S_contig9:2964705..2964808Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2964706..2964808 -
1682350550.485456-UTR-Ecto-sp6_S_contig9:2965391..29653991682350550.485456-UTR-Ecto-sp6_S_contig9:2965391..2965399Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2965392..2965399 -
1682350550.5303874-UTR-Ecto-sp6_S_contig9:2967843..29678681682350550.5303874-UTR-Ecto-sp6_S_contig9:2967843..2967868Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2967844..2967868 -
1682350550.5396965-UTR-Ecto-sp6_S_contig9:2969485..29697171682350550.5396965-UTR-Ecto-sp6_S_contig9:2969485..2969717Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2969486..2969717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350550.493355-CDS-Ecto-sp6_S_contig9:2965399..29655971682350550.493355-CDS-Ecto-sp6_S_contig9:2965399..2965597Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2965400..2965597 -
1682350550.5033495-CDS-Ecto-sp6_S_contig9:2965975..29661621682350550.5033495-CDS-Ecto-sp6_S_contig9:2965975..2966162Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2965976..2966162 -
1682350550.5127602-CDS-Ecto-sp6_S_contig9:2966778..29669601682350550.5127602-CDS-Ecto-sp6_S_contig9:2966778..2966960Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2966779..2966960 -
1682350550.5211735-CDS-Ecto-sp6_S_contig9:2967585..29678431682350550.5211735-CDS-Ecto-sp6_S_contig9:2967585..2967843Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2967586..2967843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18315.1

>prot_Ecto-sp6_S_contig9.18315.1 ID=prot_Ecto-sp6_S_contig9.18315.1|Name=mRNA_Ecto-sp6_S_contig9.18315.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=275bp
MPRGGGGAGSSSGSKGAAPLGKQDAFNEAQTAMMAQVIGPFENHGQCKLS
MVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATA
LVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLER
DRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKI
CFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATART
AKAAASASASTDSSSEPARKKTKA*
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mRNA from alignment at Ecto-sp6_S_contig9:2964706..2969717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18315.1 ID=mRNA_Ecto-sp6_S_contig9.18315.1|Name=mRNA_Ecto-sp6_S_contig9.18315.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5012bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2964706..2969717- (Ectocarpus species6 EcLAC_371)
ATACACGTACCTAGCAGTTTCATTTCGACGCCTCCAGAACTTTCCTGGAA
ATCCGTTGTTACCGCCACGATTCTGCGGGGCGTTGGTGTGCGGCACACAC
GGCACACGTGCTTGCCATTGCATTGTTGCTTGTCTTTCCCATCCCCACGG
GCACCGCCAACGTTTACTTAAGGAACTGCTGTGGGCTGCTCAAACTTGTG
CTGAATCTGGAAGCTGGGGTGTGTGTTCGCAGGTGCGACCTGTGATGCGT
CATTGTTCAACCCATTGCAAGCGACCAACTGCGAAGCCCCTGGATAAGGT
GTTGCGACTCCGCTTGCGTGTTGTTAGGTCATGAAGGATTGCTGTCTCTC
TACACGCAGCAGAAGTCTGAAATGTACACGGGTGAAGGCAATCGCAGAAG
CGCTCGATTCTTGCACTCGGTTGTGCGTATTTTGACAACACCCGGCGCGT
CATCTCCTTGATCACGGCAGACACGACCGTTAACGCTCACATGTTATATG
TAATGTGTAGGTGGTTTGTCGTGCTACAGCAGCAGTAGGGCAAAGGCTCT
GTCTCGTAGTTCTAATGAGAAGACGAGTCCACTAGCTGCACCTGCACCGC
TGAGTGCATCCTCCGAACCTAGTCTCCTGTTGGCGTATTTCCCTTTCGGT
TGGTGACAGCAACACTACAGCAGAACGCTCGATTACTGACGTTTCACGCC
GCACTGCGCCACCGCACTGCTGCGCATGGGGCCGCGGCCACAAACAACGA
CAGCAGTCCGGCTCTTCCTATTATATACATCTGTACATGGTCGCGCGATT
CAATCCTCCGCCACACAACTATCGCATGTGTTGTCCTCCGGTTGATTGTG
GACCTTGTCTCTTCTTTCACGGTCAAGCGGCAATTAATTCCTCAAGCACG
TCTTAGAAAAGGAATTTCAAACATTCACAAATGCGGCACATGCGGCCGTT
CCGAAATCCCAGGTCCACACAACCTGGTAGATTCTAGCCAACGCAGAGTT
GAAGCTCTATGAATATCTAGGGACAGCAGTTGGTGCCTGAATAGCAGTAC
AGTACCTTCTGTGCACCCCTTCACACTGGTTGTTCAAATGTTCTAATGGA
TATTTATATTTCCATATGTACTTGCGGATTTGTGTTTTAGTTCCGAAGTT
TGAATGGAGGTGACCACACGATCGTCCCAACGGTCCTGGCTTCGCGGCTG
ATTTGTATCCTTGGCATCGTTACCGGTCTTGTCTTCCCCTTGGAGGGCCT
TGAAGGGTGGTTGAAATCGTGGTCATGACGGTCGCACGGCTTCTTGCACT
TGATACCAGCTCTCCAAGTCCTCTATTGTATGCACAACTGCTGTTGCCAT
GTTTGGGTCGATTTGGTCGCATCTTTGAAAGTTGAACTCTCGCTTAAGGT
TGACTTGCGGGGTCCCAGAAGCGGCATGAAGTCCACGAGTCAACAAGTGA
CGATTTGGCTGCAGATGAGATGACTCGAAGTGTTCATCCCATTGCAAGAA
GAACGCATGGTACGACTTGTGTGAGACCTGCTTCAATTTTTGCAGCGAGG
GAGGGAGCGCTACCAATGGCAGGGAGGGGGGGGGCGTACTCTCATGTTTT
GCATGCCTTAGCGGTTCGACCATTGACCGCGCGTCCTTGAGAGGACTGAC
TATTGTTCCCACAGGACCGATCACCGATGGCGAATCGTTCCTTCCTGTGG
CAGGGGTTGGTCACCAAAATGGGGCGTAGCCGTCACAAGCGGCGTAGCCG
TCACAAGCAGAGGAAGGGCTGAAAACGTGTAGCGTCATCACCACATGAAC
ATGCCTCCGCTTTCCGCCAACCTTGTTTACGCTTGTCGTATTACTTTAGG
TGTGCGGGACAGGTGAAGGCACACATGCCGAGGGGGGGCGGCGGAGCTGG
CTCCAGCTCGGGCTCAAAAGGGGCCGCGCCATTAGGCAAACAAGATGCCT
TCAACGAAGCGCAAACGGCCATGATGGCGCAGGTCATCGGGCCCTTCGAG
AACCATGGGCAGTGCAAGCTGAGCATGGTGAACGTGACCGCCACCGCCGA
CATGAAGTGCACGATCGACCTTAAGACGGTCGTGATGAGGGCACGCAATG
CCGAATACAACCCCAAGCGCTTCTCGGCCTGCGTAAGTAAAACTCGGGAG
CTGCATAGAGGTCTCTGCTTTGCTGGTTCGTTCCTTGCTCCCTGTCGTGG
TGGTTTGATTGATCTATAATAATGGCAACGTGTCCATCTCGCTGTAGCAG
TCGCAGCTCTGGAGGCAGCAGTCCAGACGTGAACACACAGCTGTACCAGG
GTTTACTATTTGACGGCTTACAACACAAGTTATGTCTAGTGCCATTGCAC
GCAAGCGGCCGACGACTACTGCTGGTATTTGTTATTTCTATGTCGTTCCC
TGGACATGACCATTGTCTGAAGACCAATGCAGACCAATGTTTCAGCGCTG
TTCTCGACGCTGTAGAGCACGAACACCAACGGCAGCCTGTCAAAGGAATT
CGTCCATCTTACTCAGTTGTATCGCCGCTACTGCGGCAGAGCACCGGGGC
AATGTTGTTGGCAATTGATCCTGCCCATCAGAGCAGCACGTGCTGCACCG
TTTGATTCTATCTGGACCCGCGAAGTATCGCATATCCTCCAAACCAGCGT
GCAATCCCGTAAGCCTCCGAAAATGATTCCAATGCGACTTATTCTGCCGC
TGCTGGTTGTACGCTCTCTGCAACTTCGGGACTCTGTTTACGGCGTGGCA
TTCAAAGATCATCCGTCTGATTAACAAGAACGAGCCAAAGGCGACGGCGT
TGGTGTTCAAGACGGGCAAGGTGGTGGTGACAGGGTCGAGGAGCAACGCT
TCGGTAGACTACGCGTGCAAAACGTTCGCTCGAATCCTTAGCAAACTCGA
CAACGGCAGCGGCGGACCATCGCACAAGATTAACTTCGAGTGAGTCGCTG
GTAGAAAGCCAGTACGTGTGTGCCTTGTCTAGAAATGTGTACAACAACGC
CGTAGAGAGTTCGAGCACCGCGCGATTTATTTTGCAGATATATTTTCGTC
TGGTGAACGTTGTTGCGATTCCTAATTCCTGCGCCGAGGAGGGCGCAACT
ACTCATATCGGAGTCTACCTACTGCGTGTTGGAGATTACTTGCATCTAGT
TTCTTCGTGAAGCGGGAAGGCTTGATGGCTCAGGCAAACCATTATCGTGC
TTATCTGCGCGATGTGTGTCTTCGTGACTGCAACAAGTCGTGGATAGAAA
ATCTCCATTCGTGCACACGCTTGACGCAGAGGCCTCGCGCTTACAGGACT
TGATTTCGTTCGGCTCACGTGCAAGTATCAATCAAGCACCTTACCCAATC
GATCAACCCGTCGAGAAGTTACAACGATTCTGCATACTTCCATATTTTAT
ATGCTGCCATTGAAACGTTCGTGTCCTATGATCAACCGGTGGTAAAGCTT
TTACTCCGACCCCTACCCTGTCCCCCTCGATTGCTGGGTGCACGTCACCC
CGATTTTCCGAAATGTTGGCATACTACACGCCTTTGACACACCTTTGCGC
CAAAGCCTCGAGAGAGACCGGCGGGTCCAGAACATGGTGGCAACGACGGA
CGTGGGGTTTCCGATTCGCCTGGAAGGCTTGGTGGCGTCGAACCAAGGGT
GCTTCTGCAACTACGAACCCGAGCTATTTCCGGGGCTGATTTACCGCATG
AAAGATCCCAAGATATGCTTCCTCATCTTCGTTTCGGGAAAGGTGTTGTA
CACAAGCACGGAGACGTCACCAAGTCGCAAACAACCCAGATTCAACCAAA
CGGACGGTGGCTATCGAGCTGACATTTTCGGGAGCTTCGCTTCCTTCGGA
TCCGTTTCCCCTCTTTGAGAGGGCTGAGCATTAGAGTTCGCGCCTGGTTT
CGCATCACTATGATAGTTCTCGGGGGTTAGGATTGTTTGGTTGGAAAGGG
TGCTCAAGTCTGTTATGCGCCCACCAACGCGCCTCATGTGGTACTTTTTA
CAGCACTGGATTCCTCTGGTGGTGATAGTCGCTTGACCATTATCCTCTCG
TCCGATGATGAAAAGTGCCCCTACTCTGTTCCCGACTACTGCAATGTGAT
TGATTCAAACGGAATTTCAGGTGGTGCTGACGGGGGCTAAGAGCGCCCAA
CAGCTCGAGGATGGCTTCAAAAAGATGTACCCTACGCTGTGTCAATTCAA
GAAAGCCACTGTCCTCTTGCAGACCTCGGCTACTGCTCGTACCGCAAAAG
CAGCTGCTTCTGCTTCTGCGTCCACTGACTCGTCCTCCGAACCAGCGCGA
AAAAAGACCAAGGCATAGCAATCATGGTACGTAAGTTGGTGAGTTTATAT
ATTGCTGAATCGTTTTGTTGGGTTTGAGTGATCTCTGTGCCATGTTGGAC
GCAAGTGGTCACTGCTATACGCTGCATCGCAGCGCTGCAGACCTTGTTGC
TCCTAGCTTCTTGTTCTCATTGATGCCCATCGCTCTTGGGGTGTCGTGCT
GCGATTGCTTTCCGGCATGGCACCGTGTACTTCTGCGTGCTTCCCTTGGG
ACTTGCGAGATTCCGCTAATAGTTCTCACTGTTTCCGTACACATTTCTCC
TTCATGTCGCGCTTTTGTGGCATACTGTTTGTGGCCAGGTCGTAGACGGA
TATCCTGGGCCAGTTCCCAAAATACCTGCTCGTCTGGGATGAATACCAAT
TGGTGTGGACGGTTTGGAAAATAACTCGAGACCAGTTCGCTCCGTGATGA
CCCTCTAATCCCGAATTAACAGCTTGTGGAGGGCAGGGATGTTGCAACAC
GAGTGCACACGTGTGTACACATTCAAAGCGAATCAAGAACCGATCGGTAT
GCGTTTGTTTTTCGTTCCTCCTCCCTTTCCTTCGTGCGCTTGGTCCTCTG
TGAATAAAGGTCATCTCCCTCTTCCCCTCTGCGACACACGTCTGCGGTGT
CAGTGTGGAGGGGTGCGCAGGAAATATTGTCACCATTGTCGACAACATTT
TTTTTGGGGTGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2964706..2969717-

>mRNA_Ecto-sp6_S_contig9.18315.1 ID=mRNA_Ecto-sp6_S_contig9.18315.1|Name=mRNA_Ecto-sp6_S_contig9.18315.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2964706..2969717- (Ectocarpus species6 EcLAC_371)
ATGCCGAGGGGGGGCGGCGGAGCTGGCTCCAGCTCGGGCTCAAAAGGGGC
CGCGCCATTAGGCAAACAAGATGCCTTCAACGAAGCGCAAACGGCCATGA
TGGCGCAGGTCATCGGGCCCTTCGAGAACCATGGGCAGTGCAAGCTGAGC
ATGGTGAACGTGACCGCCACCGCCGACATGAAGTGCACGATCGACCTTAA
GACGGTCGTGATGAGGGCACGCAATGCCGAATACAACCCCAAGCGCTTCT
CGGCCTGCATCATCCGTCTGATTAACAAGAACGAGCCAAAGGCGACGGCG
TTGGTGTTCAAGACGGGCAAGGTGGTGGTGACAGGGTCGAGGAGCAACGC
TTCGGTAGACTACGCGTGCAAAACGTTCGCTCGAATCCTTAGCAAACTCG
ACAACGGCAGCGGCGGACCATCGCACAAGATTAACTTCGACCTCGAGAGA
GACCGGCGGGTCCAGAACATGGTGGCAACGACGGACGTGGGGTTTCCGAT
TCGCCTGGAAGGCTTGGTGGCGTCGAACCAAGGGTGCTTCTGCAACTACG
AACCCGAGCTATTTCCGGGGCTGATTTACCGCATGAAAGATCCCAAGATA
TGCTTCCTCATCTTCGTTTCGGGAAAGGTGGTGCTGACGGGGGCTAAGAG
CGCCCAACAGCTCGAGGATGGCTTCAAAAAGATGTACCCTACGCTGTGTC
AATTCAAGAAAGCCACTGTCCTCTTGCAGACCTCGGCTACTGCTCGTACC
GCAAAAGCAGCTGCTTCTGCTTCTGCGTCCACTGACTCGTCCTCCGAACC
AGCGCGAAAAAAGACCAAGGCATAG
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