mRNA_Ecto-sp6_S_contig9.18292.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18292.1
Unique NamemRNA_Ecto-sp6_S_contig9.18292.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig9.18292.1 vs. uniprot
Match: D7FVA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA5_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 2.080e-118
Identity = 197/224 (87.95%), Postives = 198/224 (88.39%), Query Frame = 1 
Query:   55 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDRDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDNDTSVADGDPRVDTFVEPYQGRPQLKGMRVRYKPAGAGSEYSPSHPPAGHQQPKGCQDDEYGATPATPDQGKKAXXXXXXXXXXXXXXXXXEVSAETLKS 726
            MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSED DSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPD D SVADGDPRVDTFVEPYQGRPQLKGMRVRYKPA AGSEYSP  PPAGH+QPKG QDDE GATPA        XXXXXXXX         EVSAET KS
Sbjct:    1 MAEGFTAADYVTSLPLSEVQGKRLWLLRVPRHIDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDGDSDEEGGNRDGEDLALRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDVDASVADGDPRVDTFVEPYQGRPQLKGMRVRYKPARAGSEYSPCRPPAGHEQPKGRQDDEDGATPAXXXXXXXXXXXXXXXXRGVAAAQAAEVSAETPKS 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVA5_ECTSI2.080e-11887.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2722961..2726177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size837
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionDNA-directed RNA polymerase I, subunit RPA34.5
Ec32 orthologEc-14_000360.1
Cds size837
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350547.7635918-CDS-Ecto-sp6_S_contig9:2722960..27231311682350547.7635918-CDS-Ecto-sp6_S_contig9:2722960..2723131Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2722961..2723131 +
1682350547.7734103-CDS-Ecto-sp6_S_contig9:2723597..27238251682350547.7734103-CDS-Ecto-sp6_S_contig9:2723597..2723825Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2723598..2723825 +
1682350547.782983-CDS-Ecto-sp6_S_contig9:2725119..27252641682350547.782983-CDS-Ecto-sp6_S_contig9:2725119..2725264Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2725120..2725264 +
1682350547.792802-CDS-Ecto-sp6_S_contig9:2725884..27261771682350547.792802-CDS-Ecto-sp6_S_contig9:2725884..2726177Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2725885..2726177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18292.1prot_Ecto-sp6_S_contig9.18292.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2722961..2726177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18292.1

>prot_Ecto-sp6_S_contig9.18292.1 ID=prot_Ecto-sp6_S_contig9.18292.1|Name=mRNA_Ecto-sp6_S_contig9.18292.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=279bp
MAAHTSSKEAVVLLDTLNMAEGFTAADYVTSLPLSEVQGKRLWLLRVPRH
IDTSRLEGVKVKLPRKGREGKVLGRANKRNDSEDRDSDEEGGNRDGEDLA
LRAGDVAETHGFRALFSAKEDGALAAAPPFVGQVNVSVDMPDNDTSVADG
DPRVDTFVEPYQGRPQLKGMRVRYKPAGAGSEYSPSHPPAGHQQPKGCQD
DEYGATPATPDQGKKAKKASAANSRGAAAAQAAEVSAETLKSSKKKKRKS
TAGGGRAEEEGHGVSSAKKSKKKKGVER*
back to top

mRNA from alignment at Ecto-sp6_S_contig9:2722961..2726177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18292.1 ID=mRNA_Ecto-sp6_S_contig9.18292.1|Name=mRNA_Ecto-sp6_S_contig9.18292.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3217bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2722961..2726177+ (Ectocarpus species6 EcLAC_371)
ATGGCAGCACACACATCAAGCAAAGAGGCTGTTGTGCTCCTCGACACTCT
GAATATGGCAGAAGGGTTCACAGCCGCAGACTACGTCACAAGCCTACCTT
TGTCCGAGGTGCAGGGCAAGCGATTGTGGCTCTTGAGGGTCCCCCGACAT
ATCGATACATCCAGACTGGAGGTGAGAGCATCTCTGCCGTGCGGTGTCTG
CAGCTTGGTCTGGCAAGAGACAGAGACAGAGACAGAGACAGAGACAGAGA
CAGAGACGGAGCGACCCGTGACCTGCGTGGGGCCGTCCCACTGTTGGCGG
TCCACGACCGGTGCTGTATCTGCATTGCGCATGATGCAAAGTCTCGACTC
ACTTTGTTGGTATCGCTTTGTATCATAGTGTGTCGTACGGTGAGCCATCG
CCAATCAAAATCAGGCCGGACAGAGAGACTCCCGCACTACTTGTTGGACC
CTCGAGTTTAGTGGGTCGGGGTATGTCCAAGCCACCAGGACCTGCGGCCG
TATTTGGTTGTGCCACGGCGTCTGTTTGCTGTGCACGACAACATTTCAAA
TAACCGTGTTGCTGGTCGATACTGCTGTCCACTGCTGCTGCTGTACGCGT
ATGCATACCACGAAACGTCTTGTCTCTCCGTCGACAGGGTGTCAAGGTTA
AGCTGCCACGAAAGGGCCGGGAGGGGAAGGTGTTGGGCAGGGCCAACAAG
CGAAACGATAGCGAAGATAGAGATAGCGACGAGGAGGGTGGAAACCGAGA
CGGTGAAGATTTGGCGCTCAGGGCAGGAGACGTCGCGGAGACCCATGGGT
TCCGGGCCCTTTTCAGCGCCAAGGAGGATGGCGCGTTGGCCGCCGCGCCT
CCATTTGTTGGCCAGGTGCGGAGGTGGGGGGGTGTCGGCGACCTTCACCC
ACAGAAGAAGAGAGGAGGCGGGTCTTATGGTACTGGGTTGCCTGATCATG
TCATGATGTCGTGTTGTGCACATGCTCGCTCGATGCAATTTAGGCCCTGC
GGATTTTTGTATGCAAAAGCAATGCTTCCGTCAGGTTTTCGGTACAACAT
GCTAACATACTCCGGAGTAAAAATTCTGTCCAAACTACAATACAATACAT
CAATCTATCCTGCTGTACTTGCGTCGATGCATCGATCATGCGCTGTTGTG
TCGTTCTGGGTGCCCCCAACAGACTAGGGAGACAAGCACTCACACCCTGA
AACGAGGTGTTTTGTGTTGTGCCTTTCACACTAGCCCTCCTACAGCAGTA
GCCCCACCTCGGAGAACAGGGTGTTCTTCTCACCCAACGATACGACGTAT
TATTCACCCCCCGGAGCAATCTCAAAGGAGATCCGGAACCTATGGAATAG
ATCGTAATTATCTATTGTAGATACCCCCCCAGCGAGTGGCGGCTTGGAGT
CGACAAAACTGCGAGGAAGCGAATCGGTAGATCTACCTCTACCCCCGTCA
GTAGCTTGGATCCCGATAACGTTGTATCAGTGTGTTATTGTATCATTGTA
TGAATGACAAAACGTTCCGAAAACCCCCGCAGCTCTCATGCCGCGGCAGT
ATGTACGTGCCCCTCCTTGTCCCACATGGCCTCCAACATGGGTCTGTCTG
TGCAGCCAGAGTTTCGGCTTCCAGTATCCCGTCGAACATTTGTTGACCAG
TTCTCGAAGGGGACGTTCCGGTTCGTCATGGTGACGGTTTCTCTTTCGCT
AGAACAGAGCTTCGATTCCGTCGGTGATGTGCGCCTTGAATGTCATCGCG
AAAAGACACGAACATCCCCTCTCTCTCGTCAGCAATCAAGTCGAATCTGA
TGTGCACACGAACACAACGACTTTCGAAATACAAACCCGCGGGAAACCAC
CGACGACCTCGACATTTCAAAACTTTTATATTTGGGTTGACCATGAAGAT
AGGTTGAATGTCTAAGAAGGCGTCTCTCTCTCTCTCTCACACACACACAC
GCGCACACCGCGTGCAGCTGTTTCTTCCAGCCGTTTCTTCCTGCTTGACG
CATGTAGCTTTGCCTTCCATGGACGCGCACACGTGTGTTTCAAACATGAT
AATCTGACGGCTGATGACGAGCGAATAATGATCCAGAGCTCTCCCAAACC
GCCCCTCTTGCGCCTGTCGTGTTACATTACATGCCTGTTTGCCACTCCTA
TTGTAATAGGTGAACGTTTCGGTGGACATGCCAGATAATGACACGTCCGT
TGCGGATGGGGACCCACGCGTAGACACGTTCGTCGAGCCCTACCAGGGAC
GGCCCCAGCTAAAGGGGATGCGGGTGCGTTACAAGCCGGCCGGAGCAGGA
TCAGGTGGGTGGCACTGGTTATGCTGTTGTCTTGACATTATTAACCGTAC
GGTCTCCGCTCGGTACCTTGTAATGCCCGTATGTATACTGGTCCAACTGA
CGCGGACGCCTTTCCCAGTTGTGTCACCCGGCGACGATGTGCGTTTCGCG
GGGGAAGCTCATAGGTCATTCTGTATCATTCTTTATCCGAGGGCGCCATC
TACATGTTTGGCACTGCCGCTGTCGGCACGGCGCGGGGGGTCGTGCAGGG
AGAGAGAAACCTTAACTTTTTTTaAATCTGTTCTATCAGAGGATACTGAA
CGGGCGTTGTTTGAAAATTTCCTGGTTTGGCAGGAAGATCAGTACCCTAT
CAAAGAAACCTTAGCTTTATTGAACCTTTCTTCTCAAGAGTGTGTGGAAA
GAGCGTTGTTCGGAAAATTTTCCTGATGGGCTGGACGATCATTGCCCTAT
TTTAGTCGATCGTGCCTGTACCAGTAACTCAGTGTGTTCGACTGCTGTAA
ATTCCTTCTTCGACACAGACACGGCTTTTGCTGTAAATATTAACTCTTCG
CGCAACGGCTTACGAACGCGCATACTCACTTTAAACAGCAAACACGCTAC
TGCTGTACATTACTTCCCACCCAGAGTATTCGCCGAGTCACCCGCCAGCT
GGACATCAACAACCAAAGGGCTGCCAAGACGATGAATATGGTGCAACGCC
GGCTACCCCCGACCAGGGGAAAAAAGCGAAGAAAGCTTCTGCGGCCAACT
CCAGAGGAGCAGCAGCGGCGCAAGCAGCAGAGGTTTCTGCAGAAACACTG
AAAAGCTCCAAGAAAAAGAAGAGAAAGTCGACGGCGGGAGGGGGTCGTGC
AGAGGAGGAGGGGCACGGGGTGTCTTCGGCCAAGAAGTCCAAGAAGAAGA
AAGGCGTCGAAAGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2722961..2726177+

>mRNA_Ecto-sp6_S_contig9.18292.1 ID=mRNA_Ecto-sp6_S_contig9.18292.1|Name=mRNA_Ecto-sp6_S_contig9.18292.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2722961..2726177+ (Ectocarpus species6 EcLAC_371)
ATGGCAGCACACACATCAAGCAAAGAGGCTGTTGTGCTCCTCGACACTCT
GAATATGGCAGAAGGGTTCACAGCCGCAGACTACGTCACAAGCCTACCTT
TGTCCGAGGTGCAGGGCAAGCGATTGTGGCTCTTGAGGGTCCCCCGACAT
ATCGATACATCCAGACTGGAGGGTGTCAAGGTTAAGCTGCCACGAAAGGG
CCGGGAGGGGAAGGTGTTGGGCAGGGCCAACAAGCGAAACGATAGCGAAG
ATAGAGATAGCGACGAGGAGGGTGGAAACCGAGACGGTGAAGATTTGGCG
CTCAGGGCAGGAGACGTCGCGGAGACCCATGGGTTCCGGGCCCTTTTCAG
CGCCAAGGAGGATGGCGCGTTGGCCGCCGCGCCTCCATTTGTTGGCCAGG
TGAACGTTTCGGTGGACATGCCAGATAATGACACGTCCGTTGCGGATGGG
GACCCACGCGTAGACACGTTCGTCGAGCCCTACCAGGGACGGCCCCAGCT
AAAGGGGATGCGGGTGCGTTACAAGCCGGCCGGAGCAGGATCAGAGTATT
CGCCGAGTCACCCGCCAGCTGGACATCAACAACCAAAGGGCTGCCAAGAC
GATGAATATGGTGCAACGCCGGCTACCCCCGACCAGGGGAAAAAAGCGAA
GAAAGCTTCTGCGGCCAACTCCAGAGGAGCAGCAGCGGCGCAAGCAGCAG
AGGTTTCTGCAGAAACACTGAAAAGCTCCAAGAAAAAGAAGAGAAAGTCG
ACGGCGGGAGGGGGTCGTGCAGAGGAGGAGGGGCACGGGGTGTCTTCGGC
CAAGAAGTCCAAGAAGAAGAAAGGCGTCGAAAGATAG
back to top