mRNA_Ecto-sp6_S_contig9.18256.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18256.1
Unique NamemRNA_Ecto-sp6_S_contig9.18256.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18256.1 vs. uniprot
Match: D7FVD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD4_ECTSI)

HSP 1 Score: 608 bits (1568), Expect = 2.620e-214
Identity = 333/349 (95.42%), Postives = 335/349 (95.99%), Query Frame = 1 
Query:  613 VAKEALTAEEAEKDAWRQAETKRVEDMVREEHVMLQDAANRRDGTVSTMETIGVEDADNMFEGFVGRINPRQYVLDGDRALPTRHPALPPSALGPRKVRFLENADVSMEAVTHQMAGVLRAVEEKVKKIEALQIDGPSGQQKKGSGNPSGALIAPPVSPPGITDSXXXXXXXXXXXXXGDVDNTKDNNFDRNGNPLDSTGDRGHLAVKSDGTLMAEGADTEIGPTPRYAPGTTYNDFSSHLFASSEAEELPNVTAQPWCTTTLHETGRCIGAELEVAMLCMQKRLGKQPIVYGEQDASGELEKEQGTEDSEASKPAEQPPEKEVVRTREHERSSRLQSASTPRRGPRTS 1659
            VAKEALTAEEAEKDAWRQAETKRVEDMVREEHVMLQDAANRRD TVSTMETIGVEDADNMFEGFVGRI+PRQYVLDGDRALPTRHPALPPSALGPRK  FLENADVSMEAVTHQMAGVLR VEEKVKKIEALQIDGPSGQQK GSGNPSGALIAPPVSPPGITDSXXXXXXXXXXXXXGD DNTKDNNFDRNGNPLDS GDRGHLAVKSDGTLMAEGADTEIGP PRYAPGTTYNDFS HLFASSEAEELPNV AQPWCTTTL ET RCIGAELEVAMLCMQKRLGKQPIVYGEQDA+GELEKEQGTEDS ASKPAEQPPEKEVVRTREH RSSRLQSASTPRRGPRTS
Sbjct:   43 VAKEALTAEEAEKDAWRQAETKRVEDMVREEHVMLQDAANRRDDTVSTMETIGVEDADNMFEGFVGRISPRQYVLDGDRALPTRHPALPPSALGPRKFYFLENADVSMEAVTHQMAGVLRTVEEKVKKIEALQIDGPSGQQKGGSGNPSGALIAPPVSPPGITDSXXXXXXXXXXXXXGDADNTKDNNFDRNGNPLDSAGDRGHLAVKSDGTLMAEGADTEIGPAPRYAPGTTYNDFSRHLFASSEAEELPNVAAQPWCTTTLQETRRCIGAELEVAMLCMQKRLGKQPIVYGEQDATGELEKEQGTEDSVASKPAEQPPEKEVVRTREHGRSSRLQSASTPRRGPRTS 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVD4_ECTSI2.620e-21495.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2345779..2348574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1668
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_000700.1
Cds size1200
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18256.1prot_Ecto-sp6_S_contig9.18256.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2345779..2347716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350542.343527-CDS-Ecto-sp6_S_contig9:2345778..23458651682350542.343527-CDS-Ecto-sp6_S_contig9:2345778..2345865Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2345779..2345865 -
1682350542.352035-CDS-Ecto-sp6_S_contig9:2346005..23461131682350542.352035-CDS-Ecto-sp6_S_contig9:2346005..2346113Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2346006..2346113 -
1682350542.3600328-CDS-Ecto-sp6_S_contig9:2346451..23469221682350542.3600328-CDS-Ecto-sp6_S_contig9:2346451..2346922Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2346452..2346922 -
1682350542.3712668-CDS-Ecto-sp6_S_contig9:2347055..23473641682350542.3712668-CDS-Ecto-sp6_S_contig9:2347055..2347364Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2347056..2347364 -
1682350542.3800948-CDS-Ecto-sp6_S_contig9:2347491..23477161682350542.3800948-CDS-Ecto-sp6_S_contig9:2347491..2347716Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2347492..2347716 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350542.3891087-UTR-Ecto-sp6_S_contig9:2347716..23480761682350542.3891087-UTR-Ecto-sp6_S_contig9:2347716..2348076Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2347717..2348076 -
1682350542.3988013-UTR-Ecto-sp6_S_contig9:2348466..23485741682350542.3988013-UTR-Ecto-sp6_S_contig9:2348466..2348574Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 2348467..2348574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18256.1

>prot_Ecto-sp6_S_contig9.18256.1 ID=prot_Ecto-sp6_S_contig9.18256.1|Name=mRNA_Ecto-sp6_S_contig9.18256.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=400bp
MDITKPILLIFFLPPVLGENLPVNLVQIAHDLDAKLLEFTLMAKAREQVA
KEALTAEEAEKDAWRQAETKRVEDMVREEHVMLQDAANRRDGTVSTMETI
GVEDADNMFEGFVGRINPRQYVLDGDRALPTRHPALPPSALGPRKVRFLE
NADVSMEAVTHQMAGVLRAVEEKVKKIEALQIDGPSGQQKKGSGNPSGAL
IAPPVSPPGITDSSSSSANEDDKEGGGDVDNTKDNNFDRNGNPLDSTGDR
GHLAVKSDGTLMAEGADTEIGPTPRYAPGTTYNDFSSHLFASSEAEELPN
VTAQPWCTTTLHETGRCIGAELEVAMLCMQKRLGKQPIVYGEQDASGELE
KEQGTEDSEASKPAEQPPEKEVVRTREHERSSRLQSASTPRRGPRTSKF*
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mRNA from alignment at Ecto-sp6_S_contig9:2345779..2348574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18256.1 ID=mRNA_Ecto-sp6_S_contig9.18256.1|Name=mRNA_Ecto-sp6_S_contig9.18256.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2796bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2345779..2348574- (Ectocarpus species6 EcLAC_371)
CATGAACTCTACCTTCAGGATTCTCATGAACTGGATCGACGAAGTTACTC
TGGAGGTGCTGAACTTCAGGGTCAAATATCGCTGACATCGCCAAAGCCAG
CAACAGATGTGAGCAGAGAAGTTAATATTCTGCGTCGCGATGGATTGCTT
GTACTCCTGCTGAAAGGCACATCCATCGAAACAGCAGCATGATATGATGG
GCTGTTGCGTAAAAGAAGGGAGGCACACTTGTGAGTCCTCGTCTCCCGTC
AGTTTTTTTTCATCGCAATATGCATGGCATATCTCTAGCCTTCTGGATGA
GAAATGTTTGCGGCTCCGTTTCCCTATACTTCCAGCTGCTGCACATATGC
AACATAGAGCCTTCCGTTTAGTTATGACCTTCCCGCGGTAGGGGTATCAG
CTAAGCAGGCTACACGTTGATCTGTCATCTCGACCTGTTTACTATGCCGC
CGAACGTAAGCACCCAACGCTTAGCGTCGGTCTCTGCCGTTATTTCAGGA
CGAGTCGGGCCAAGATAAGCAGCAGCTGGACCTAATACGCGGCGAGCATG
CGACTTGGGAAAATATTCCCAGCGCCGTCGGCGTGGCTTCAGATCTTGAT
GGCGTGCTCAAACAGCTGCGGAGCGGAATCGTCCAGCGGCAACAAGCAGG
GTCTTCTGGGCATCTGTCGCCGCGTAAGCTATGGAATTAGCTCAACTGCG
GGCAAATCTAAGTGGACGAAGCAGAGTTGTAGAGATGGGACAAATCTAAA
GCCTGGAGAAGCGCGAATGACGCGTCCTGCATCGATGTGCCCCTCGCGGA
TCGTACACAAGTGTAAAGTGTTCGGAGCTTGTGTCCTATCAATTTGAATG
GTGCTTCGATGGACATCACTAAGCCCATCCTCTTGATTTTCTTTCTACCA
CCCGTTCTAGGAGAAAACTTACCAGTCAATCTTGTCCAAATAGCCCACGA
TTTGGACGCGAAGCTGCTAGAATTCACTCTTATGGCGAAAGCTCGAGAAC
AGGTCGCTAAGGAGGCCCTCACAGCCGAAGAGGCCGAAAAGGATGCTTGG
AGGCAAGCGGAGACAAAGAGGGTGGAAGACATGGTAAGAGCCCTATCTGA
AGCCCATCTTAAAAACGCACCGCTTTCTATCTGCATAAATAGGTAGTGTT
TCAATTGTGTGGTGCATGCCAAGCATGGCTAAATTGGTCGCTTACTGCTT
GATGTGGCAGGTGAGGGAAGAACATGTCATGCTACAGGATGCGGCCAACA
GGAGGGATGGCACTGTCTCAACGATGGAGACCATAGGCGTAGAAGATGCT
GACAACATGTTTGAAGGGTTTGTGGGACGTATCAACCCACGACAGTACGT
TCTAGACGGGGACCGAGCCTTGCCCACCAGACATCCTGCCCTTCCGCCGA
GCGCTTTGGGTCCGCGCAAAGTGCGTTTCCTTGAGAACGCTGACGTATCG
ATGGAAGCCGTCACTCATCAGATGGCTGGAGTTCTTCGTGCCGTGGAGGA
AAAAGTAAAGAAAATTGAGGTGCGTGATGACCTCCCAAGCCGTTACGTAT
TCGGTCCATCGACTACTGTACTGACGTCCACACATCACCTGCGTGCAGTT
CACATACTTCCGAAAACAGCCAAGTGTAACCACGTCCCGCCTTTTCTCAC
AGGCGCTTCAGATTGACGGGCCTTCAGGTCAGCAGAAAAAAGGCTCTGGA
AACCCGAGCGGTGCCCTAATTGCACCACCAGTTTCACCGCCTGGCATAAC
TGACTCATCGTCATCCAGTGCCAACGAGGATGACAAAGAGGGTGGTGGAG
ACGTCGACAACACAAAGGACAACAACTTTGATAGAAACGGCAACCCCTTG
GATTCGACCGGAGATCGAGGCCATCTGGCCGTGAAATCAGATGGCACTCT
CATGGCAGAAGGTGCCGACACAGAAATTGGCCCAACGCCCCGATATGCGC
CGGGTACGACATACAACGATTTTTCAAGTCATTTATTTGCTTCAAGTGAA
GCCGAAGAACTCCCGAACGTGACTGCACAGCCGTGGTGTACAACCACGCT
ACATGAAACTGGACGATGCATCGGAGCAGAGCTTGAAGTGGCCATGCTCT
GCATGCAAAAGCGACTCGGCAAGGTGCAAAAAAAACTTACATAGAAAGCG
AAGTAGGAGGAGCATGGAGTAGCGATGAGGCCAACGAATATTGTTTTTAT
TGGAGCTATCGCACCGGACAGCACATGGGGGTAACGGAAAAGATTCCAGC
GGAGAATTCGAGAAGATGGAGAAATTACTGTAGTATCTGGTGTTTGGGTG
TCAATGCAAGAACAGGCTTGCTATGTATTTCTCCCGTGAAACAAGAGCAA
CAGACCCTCTGCCACTCTTTATTCCAGCGGCCTTGCGACATGCCTGATGC
TTTGTTTTCTACCTTGATCGCCTTTCCGCCCCCCGTTTTGTTGATTCCAA
ATATTCCGTAGCAACCCATCGTGTACGGCGAGCAGGACGCCTCCGGTGAA
CTTGAAAAAGAACAAGGAACCGAAGACAGCGAAGCCAGCAAGCCCGCAGA
GCAGCCGCCCGAGAAAGAGGTCAGAGATTCTTCGGAGATTTCGCCACAGA
AGATTTTGCAAGCACTGGCCGATGGTATGGCACTTCGCCAGGAGCGGGAC
ACTCACACTGAGCTTGACCGTGAGCTCGGACTTGATTTCAAGGACGACCC
CGGCAACAGGTGGTGCGGACACGGGAGCACGAAAGATCGTCCCGGTTACA
ATCGGCGAGCACCCCACGACGCGGCCCACGCACAAGTAAATTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2345779..2348574-

>mRNA_Ecto-sp6_S_contig9.18256.1 ID=mRNA_Ecto-sp6_S_contig9.18256.1|Name=mRNA_Ecto-sp6_S_contig9.18256.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2345779..2348574- (Ectocarpus species6 EcLAC_371)
ATGGACATCACTAAGCCCATCCTCTTGATTTTCTTTCTACCACCCGTTCT
AGGAGAAAACTTACCAGTCAATCTTGTCCAAATAGCCCACGATTTGGACG
CGAAGCTGCTAGAATTCACTCTTATGGCGAAAGCTCGAGAACAGGTCGCT
AAGGAGGCCCTCACAGCCGAAGAGGCCGAAAAGGATGCTTGGAGGCAAGC
GGAGACAAAGAGGGTGGAAGACATGGTGAGGGAAGAACATGTCATGCTAC
AGGATGCGGCCAACAGGAGGGATGGCACTGTCTCAACGATGGAGACCATA
GGCGTAGAAGATGCTGACAACATGTTTGAAGGGTTTGTGGGACGTATCAA
CCCACGACAGTACGTTCTAGACGGGGACCGAGCCTTGCCCACCAGACATC
CTGCCCTTCCGCCGAGCGCTTTGGGTCCGCGCAAAGTGCGTTTCCTTGAG
AACGCTGACGTATCGATGGAAGCCGTCACTCATCAGATGGCTGGAGTTCT
TCGTGCCGTGGAGGAAAAAGTAAAGAAAATTGAGGCGCTTCAGATTGACG
GGCCTTCAGGTCAGCAGAAAAAAGGCTCTGGAAACCCGAGCGGTGCCCTA
ATTGCACCACCAGTTTCACCGCCTGGCATAACTGACTCATCGTCATCCAG
TGCCAACGAGGATGACAAAGAGGGTGGTGGAGACGTCGACAACACAAAGG
ACAACAACTTTGATAGAAACGGCAACCCCTTGGATTCGACCGGAGATCGA
GGCCATCTGGCCGTGAAATCAGATGGCACTCTCATGGCAGAAGGTGCCGA
CACAGAAATTGGCCCAACGCCCCGATATGCGCCGGGTACGACATACAACG
ATTTTTCAAGTCATTTATTTGCTTCAAGTGAAGCCGAAGAACTCCCGAAC
GTGACTGCACAGCCGTGGTGTACAACCACGCTACATGAAACTGGACGATG
CATCGGAGCAGAGCTTGAAGTGGCCATGCTCTGCATGCAAAAGCGACTCG
GCAAGCAACCCATCGTGTACGGCGAGCAGGACGCCTCCGGTGAACTTGAA
AAAGAACAAGGAACCGAAGACAGCGAAGCCAGCAAGCCCGCAGAGCAGCC
GCCCGAGAAAGAGGTGGTGCGGACACGGGAGCACGAAAGATCGTCCCGGT
TACAATCGGCGAGCACCCCACGACGCGGCCCACGCACAAGTAAATTTTGA
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