mRNA_Ecto-sp6_S_contig9.18230.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18230.1
Unique NamemRNA_Ecto-sp6_S_contig9.18230.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:2049714..2050595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size333
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_000970.1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350538.7783325-CDS-Ecto-sp6_S_contig9:2049713..20498301682350538.7783325-CDS-Ecto-sp6_S_contig9:2049713..2049830Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2049714..2049830 +
1682350538.7875473-CDS-Ecto-sp6_S_contig9:2050379..20505951682350538.7875473-CDS-Ecto-sp6_S_contig9:2050379..2050595Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 2050380..2050595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18230.1prot_Ecto-sp6_S_contig9.18230.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 2049714..2050595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18230.1

>prot_Ecto-sp6_S_contig9.18230.1 ID=prot_Ecto-sp6_S_contig9.18230.1|Name=mRNA_Ecto-sp6_S_contig9.18230.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=111bp
QEEPFPLPDAVLCPSAGDGCDADDGLDCLPMNWYISTVEAVSFQMMMVRV
HQLEMTVLRQRLRRWWCRLSASKWRQGRTSCAREYPYRSAPLTTMVSRLG
MCTHCMLPFM*
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mRNA from alignment at Ecto-sp6_S_contig9:2049714..2050595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18230.1 ID=mRNA_Ecto-sp6_S_contig9.18230.1|Name=mRNA_Ecto-sp6_S_contig9.18230.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=882bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2049714..2050595+ (Ectocarpus species6 EcLAC_371)
CAGGAGGAGCCTTTCCCACTACCAGATGCAGTGCTCTGCCCCTCAGCTGG
GGACGGCTGCGACGCCGACGATGGCTTGGACTGTTTGCCGATGAATTGGT
ACATATCGACTGTCGAGGTGAGCGCAGAAAGAGTTCAAAATAAATTTGTT
TGGTCTCTGGTACGATGGAAACTTCGTGAAATACTGTGTCCAGCAACACC
TCTGTGGTTGTGTATTCAACGCTGAATACTGCTTTCGCCAAAAGGCTTGA
TTCGGATAGGAGCCCTAAGGTTCCACCAATGTGGTGGTTTAACTCTAAGC
GTGGGTGCTTTGAAACAACAACCTATCCCAAGCTTACTGCATGTCGCTAA
GATGATTGTCCAACCATGCAATGTTGACAAGTATCCACCATGCATACACT
TATATTTTTTTCTGCTTTTTGAGTAGGGTTAGGGTCCGCGTGCTCGACGT
TGAGCTGCTAGACTTGACCGTATTTCCGTCCCCACGTTCGCCGTGGGCCT
TCGCCTTTCGCACGTTTACGTGGCTCCTCGTCGACATGCGACGGAAAGGG
CCTTTCGGGATGCAACGAGTACTTCGCGCCAACTCCCGCGCCAACACAGG
CTCCGACTATCGCCCCCGCGGTAGGTGCGGCGCCCCCAACCGGTGGCTAC
TATTCGTATAACTCAGGCCGTGAGTTTTCAGATGATGATGGTTCGGGTGC
ATCAACTGGAGATGACGGTTTTGAGGCAACGCCTTCGCCGGTGGTGGTGC
CGTCTATCCGCGTCCAAGTGGCGACAAGGGCGAACGAGTTGTGCCCGAGA
GTACCCCTATCGGAGTGCGCCATTGACTACGATGGTGTCGAGGCTGGGGA
TGTGCACTCACTGCATGCTTCCTTTTATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:2049714..2050595+

>mRNA_Ecto-sp6_S_contig9.18230.1 ID=mRNA_Ecto-sp6_S_contig9.18230.1|Name=mRNA_Ecto-sp6_S_contig9.18230.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:2049714..2050595+ (Ectocarpus species6 EcLAC_371)
CAGGAGGAGCCTTTCCCACTACCAGATGCAGTGCTCTGCCCCTCAGCTGG
GGACGGCTGCGACGCCGACGATGGCTTGGACTGTTTGCCGATGAATTGGT
ACATATCGACTGTCGAGGCCGTGAGTTTTCAGATGATGATGGTTCGGGTG
CATCAACTGGAGATGACGGTTTTGAGGCAACGCCTTCGCCGGTGGTGGTG
CCGTCTATCCGCGTCCAAGTGGCGACAAGGGCGAACGAGTTGTGCCCGAG
AGTACCCCTATCGGAGTGCGCCATTGACTACGATGGTGTCGAGGCTGGGG
ATGTGCACTCACTGCATGCTTCCTTTTATGTGA
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