mRNA_Ecto-sp6_S_contig9.18210.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18210.1
Unique NamemRNA_Ecto-sp6_S_contig9.18210.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: A0A6H5J619_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J619_9PHAE)

HSP 1 Score: 555 bits (1431), Expect = 1.130e-197
Identity = 293/316 (92.72%), Postives = 301/316 (95.25%), Query Frame = 3
Query:   21 MPTATLPSRLRLSTCLPAIAVAQLFLRPGVNGLAFNFPAACSSGARSSTASATGPLMASXXXXXXXXAQD--AMPFPTGSKPVKEMDSPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLYDKIAS 962
            MP ATLPSRL LST LPAIAVAQLFLRPGVNGL  +FPAACSSGARS+TA   GP+M  XXXXXXXXAQD  AMPFPTGSKPVKE++SPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVP+LELGRPGS+DHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLD WVSSA MLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYND+EFFPRMRGLTIVQ LGIPPKLRAYLDAVSERVDVPLYDKIAS
Sbjct:    1 MPPATLPSRLCLSTFLPAIAVAQLFLRPGVNGLTLSFPAACSSGARSATAG--GPVMXXXXXXXXXXAQDKVAMPFPTGSKPVKEIESPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPILELGRPGSDDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDSWVSSAGMLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDIEFFPRMRGLTIVQGLGIPPKLRAYLDAVSERVDVPLYDKIAS 314          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: D7FTR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR2_ECTSI)

HSP 1 Score: 488 bits (1257), Expect = 2.580e-172
Identity = 241/243 (99.18%), Postives = 242/243 (99.59%), Query Frame = 3
Query:  234 MPFPTGSKPVKEMDSPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLYDKIAS 962
            MPFPTGSKPVKEMDSPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVP+LELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQ LGIPPKLRAYLDAVSERVDVPLYDKIAS
Sbjct:    1 MPFPTGSKPVKEMDSPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPILELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQGLGIPPKLRAYLDAVSERVDVPLYDKIAS 243          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: A0A6V1VKR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VKR3_HETAK)

HSP 1 Score: 228 bits (582), Expect = 5.040e-69
Identity = 109/226 (48.23%), Postives = 155/226 (68.58%), Query Frame = 3
Query:  285 PKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTPLA-EFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLYDKIA 959
            P++++YDHCPYC R R++ GLK I H+L +++NDD +TP ++VGKKM P+ E        HE+MAES+DI+ RLD DP++GPP+L PA DR D   W++   +L  RLV PR A +PL  EF  + ARE +V+ HPLP PS Y+     SP+ +EE+  +L +LE MI S     A G LS +DVE F R+RGLT+V+ L  PPK++AY++ +S++  VPLY ++A
Sbjct:   88 PRVFLYDHCPYCTRVRIILGLKNIKHELVWMANDDFDTPISLVGKKMAPIFEYNSE-ERGHEVMAESLDIIARLDSDPKWGPPLLRPASDRTDFRNWINDNKVLYNRLVNPRYARSPLIPEFTFQEAREVYVKRHPLPAPSDYDVLFAMSPQFVEEMNEKLLELEPMIFSAEHCTAGG-LSVDDVELFSRLRGLTVVRGLSFPPKVKAYIETMSQKTKVPLYYQLA 311          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: A0A5J4YKV5_PORPP (Glutaredoxin 2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YKV5_PORPP)

HSP 1 Score: 211 bits (536), Expect = 5.360e-63
Identity = 97/226 (42.92%), Postives = 149/226 (65.93%), Query Frame = 3
Query:  285 PKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHEIMAESMDIVKRLDLDPQFGPP-VLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLYDKIA 959
            P+L++Y HCP+CVR +   GLK I H+L +L+NDD+ TPTA+VGKK+VP+LE+GRPG   HE+M ES+DI+KR+D DP FGP  ++ PA  R+D+D W+  +  L RRL+ PR    PL EF    AR A++RNH +PEP  Y+ N   S +L+ ++   + KL+ ++       ++G +S +D+  F R+R L +++    PPK++AY+D   +  D+P +  +A
Sbjct:   22 PRLYLYAHCPFCVRVQTALGLKNIKHELVFLANDDVATPTALVGKKVVPILEIGRPGQPGHELMNESLDIIKRIDEDPAFGPTNLIKPATGRQDIDAWIKESKELNRRLISPRYVRVPLPEFFFAEARAAYIRNHAIPEPGDYDTNFAMSAELLPQMNALMAKLDALVFCEQH-CSEGGVSMDDLVLFSRLRSLELLKGAVWPPKVKAYMDHFHQLTDIPSFAPMA 246          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: W7TQ45_9STRA (Glutaredoxin 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ45_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.350e-62
Identity = 112/224 (50.00%), Postives = 153/224 (68.30%), Query Frame = 3
Query:  282 RPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTP-LAEFQTRSAREAFVRNHPLPEPS-SYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLY 947
            RP L+IYDHCP+CVR R++FGLK I H L +L NDD +TPTA+VGKKMVP+LE+     E   +M ESMDIVK +D DP++GPPVL    DR+D+  +  S A L RR  RPR A++  L EF T +AR AFVRNHP   P   Y  NL+ +  L+ +L   L +L+ M+ S   V  +G +SY+DV+ F ++RGLT+V  L +PP+L+AY++A  E+ ++PLY
Sbjct:   52 RPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGE-RVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQ-NKSLVADLSARLRELDAMLFSDECVT-EGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLY 272          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: A0A0G4EFM6_VITBC (GST N-terminal domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EFM6_VITBC)

HSP 1 Score: 211 bits (538), Expect = 3.960e-62
Identity = 113/231 (48.92%), Postives = 154/231 (66.67%), Query Frame = 3
Query:  285 PKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELG--RPGSEDHEIMAESMDIVKRLDLDPQFGP--PVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTP-LAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTS-VAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLYDKIA 959
            P+L++YDHCP+CVR RM+FGLK I HDL Y++NDDIETPT ++GKKM P+LE+   RPG  +  IM ES+DIVK +D   + G   P+L P   R DL  W+ S A   RRL RPR A +  L EF   SAR  ++  HPL  PSSYE N + S + I  L   L KL+GMI +P     ++G +SY+D++ FPR+R L+IV+ L  PP ++AY++ +S++ DV LY K+A
Sbjct:  108 PRLYVYDHCPFCVRARMIFGLKNIKHDLVYMANDDIETPTHLIGKKMAPILEVRGRRPG--EGLIMPESLDIVKYIDESEEIGAGLPLLKPFSGRSDLKEWLDSIAEPSRRLSRPRFAWSANLPEFAFDSARRTYIARHPLENPSSYEENYERSAEWIAALSEGLKKLDGMIANPQEGYISEGGISYDDIDMFPRLRNLSIVKGLEFPPNVKAYIEVLSKKTDVALYTKMA 336          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: A0A7S2XXQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ8_9STRA)

HSP 1 Score: 207 bits (526), Expect = 5.380e-61
Identity = 102/215 (47.44%), Postives = 150/215 (69.77%), Query Frame = 3
Query:  285 PKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVD-RKDLDGWVSSAAMLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSE 926
            P+L+IYDHCP+CVR RM+FGLK I H+L ++S+DD +TP  +VGKK+ P+LE+     +D E+M ESMDIV R+D DP++G P+L    + R+DL  W+     L RR +  R+ + PL EFQ RSARE F++ HPL EPS Y  N   S  L+EE+ ++L +L+ MI SP     DG LSY+D+  F ++R +T+++ + IPPK++AY++++SE
Sbjct:   74 PQLYIYDHCPFCVRARMIFGLKSIKHNLVFMSSDDWDTPEGLVGKKVAPILEIKHEDGKD-EVMPESMDIVWRIDNDPKYGQPLLKGKPELREDLAQWMKDTRDLFRRALHTRHVMVPLPEFQFRSAREVFIQRHPLAEPSDYNENYYNS-ALVEEMNQKLLELDAMIFSP-ECCTDGGLSYDDIAVFGKLRSVTLIRGIKIPPKMKAYIESMSE 285          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: A0A2V3IFN8_9FLOR (Glutaredoxin 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFN8_9FLOR)

HSP 1 Score: 202 bits (513), Expect = 1.130e-59
Identity = 106/240 (44.17%), Postives = 152/240 (63.33%), Query Frame = 3
Query:  243 PTGSKPVKEMDSPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHEIMAESMDIVKRLDLDPQFGPP-VLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLYDKIA 959
            PT S P + + SP P L++YDHCP+CVR R + GLK I ++L +L+NDD+ TPTA+VG+K+VP+ +   P         ES+DI K +D DP+FG P +L  A  R D+  W+   AM MRRL R R +  PL EF  + ARE ++RNHPL +P  YE N   S + I +++  L +L  MI+SP   +  G LSY+D+  FPR+R LTIV+ L +P +LR Y++  +   ++P+YD  A
Sbjct:    2 PTPSLPPRVVLSPLPTLYVYDHCPFCVRVRHLLGLKNIKYNLVFLANDDVTTPTALVGRKVVPIFQ---PQGTGGPAQPESLDICKHVDNDPRFGAPGLLKSATPRDDIAKWMDELAMPMRRLSRVRFSRAPLPEFVFQEARETYIRNHPLSDPGDYEDNFDRSTEYITQVQERLDELAEMIYSPEHCSPHG-LSYDDIVLFPRLRTLTIVKGLVLPKRLREYVEFQAAAAEIPVYDYCA 237          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: A0A7S0M661_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M661_9CRYP)

HSP 1 Score: 201 bits (510), Expect = 1.100e-58
Identity = 112/252 (44.44%), Postives = 153/252 (60.71%), Query Frame = 3
Query:  258 PVKEMDSPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTP-LAEFQTRSAREAFVRNHPLP-----------------EPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLYDKIA 959
            P   + +P P+L++YDHCP+CVR R + G K I H++ +L+NDDIETPT +VGKK+VP+LE+   G    E+M ESMDIVKR+D DP FGP +L PA  RKDL  W      L R L RPR   +  L EF  ++ R+A+VRNH LP                   + Y   L+ +P L+      + +L GMI S     ++G LSY+DV+ F R+R LTIV+ L +P  +RAYL++++   DVPLYD IA
Sbjct:   32 PALVVGTPVPRLYVYDHCPFCVRVRFIMGFKNIKHNVVFLANDDIETPTKLVGKKVVPILEIPSYG----EVMKESMDIVKRIDEDPTFGPQLLKPASGRKDLSEWQDKHQDLFRLLQRPRYVSSGILPEFSQQAGRDAYVRNHALPPYAKEEWSDDKRLPRAMRYAKYAEALQQTPALLPAAAAAVQELGGMIASAQH-CSEGGLSYDDVDLFGRLRSLTIVRGLPLPDTVRAYLESMAAAADVPLYDPIA 278          
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Match: A0A0G4H2N0_9ALVE (Uncharacterized protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H2N0_9ALVE)

HSP 1 Score: 194 bits (494), Expect = 3.210e-56
Identity = 105/231 (45.45%), Postives = 147/231 (63.64%), Query Frame = 3
Query:  279 PRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDH-EIMAESMDIVKRLDLDPQFGP--PVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTPLA-EFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAVSERVDVPLYDKIA 959
            P P+L++YDHCP+CVR R++FGLK I H+L +L+ND+++ PT +VGKKMVP+L    P        M ESMDIV+R+D D + G   PVL      ++    ++      RRL RPR A + L  EF   +AR  +   HPL  PSSY+ N K S + I +LE+ L KL+ ++HS    A +G  SY DV+ FPR+RG TIV+ +  P ++RAY+D  SE+ D+PLYD+IA
Sbjct:   55 PLPQLYVYDHCPFCVRARIIFGLKKIKHELIWLANDEVDIPTRLVGKKMVPILVWTDPQDPQKITAMPESMDIVRRVDGDAKMGAGGPVLKETGASEEFISAMNEVTAASRRLTRPRFAGSALLPEFSFDAARRTYTERHPLDAPSSYDENFKRSSEYIPQLEKALQKLDPLLHSEEE-AVEGGPSYTDVDLFPRLRGCTIVKGVKWPQRVRAYVDKWSEKTDIPLYDRIA 284          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J619_9PHAE1.130e-19792.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTR2_ECTSI2.580e-17299.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1VKR3_HETAK5.040e-6948.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J4YKV5_PORPP5.360e-6342.92Glutaredoxin 2 n=1 Tax=Porphyridium purpureum TaxI... [more]
W7TQ45_9STRA1.350e-6250.00Glutaredoxin 2 n=2 Tax=Monodopsidaceae TaxID=42507... [more]
A0A0G4EFM6_VITBC3.960e-6248.92GST N-terminal domain-containing protein n=1 Tax=V... [more]
A0A7S2XXQ8_9STRA5.380e-6147.44Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2V3IFN8_9FLOR1.130e-5944.17Glutaredoxin 2 n=1 Tax=Gracilariopsis chorda TaxID... [more]
A0A7S0M661_9CRYP1.100e-5844.44Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A0G4H2N0_9ALVE3.210e-5645.45Uncharacterized protein n=2 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1892233..1897563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score490.3
Seed ortholog evalue6.5e-136
Seed eggNOG ortholog2880.D7FTR2
Model size1128
Hectar predicted targeting categorychloroplast
Exons6
EggNOG free text desc.Glutaredoxin 2, C terminal domain
EggNOG OGs2RYF1@2759,COG2999@1
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-14_001150.1
Cds size945
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18210.1prot_Ecto-sp6_S_contig9.18210.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1892396..1897543 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350537.0097294-UTR-Ecto-sp6_S_contig9:1892232..18923951682350537.0097294-UTR-Ecto-sp6_S_contig9:1892232..1892395Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1892233..1892395 -
1682350537.080927-UTR-Ecto-sp6_S_contig9:1897543..18975631682350537.080927-UTR-Ecto-sp6_S_contig9:1897543..1897563Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1897544..1897563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350537.0214715-CDS-Ecto-sp6_S_contig9:1892395..18924171682350537.0214715-CDS-Ecto-sp6_S_contig9:1892395..1892417Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1892396..1892417 -
1682350537.0314596-CDS-Ecto-sp6_S_contig9:1893057..18932601682350537.0314596-CDS-Ecto-sp6_S_contig9:1893057..1893260Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1893058..1893260 -
1682350537.0415337-CDS-Ecto-sp6_S_contig9:1894055..18941451682350537.0415337-CDS-Ecto-sp6_S_contig9:1894055..1894145Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1894056..1894145 -
1682350537.0511975-CDS-Ecto-sp6_S_contig9:1894637..18948171682350537.0511975-CDS-Ecto-sp6_S_contig9:1894637..1894817Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1894638..1894817 -
1682350537.0611959-CDS-Ecto-sp6_S_contig9:1895819..18959581682350537.0611959-CDS-Ecto-sp6_S_contig9:1895819..1895958Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1895820..1895958 -
1682350537.0709786-CDS-Ecto-sp6_S_contig9:1897232..18975431682350537.0709786-CDS-Ecto-sp6_S_contig9:1897232..1897543Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1897233..1897543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18210.1

>prot_Ecto-sp6_S_contig9.18210.1 ID=prot_Ecto-sp6_S_contig9.18210.1|Name=mRNA_Ecto-sp6_S_contig9.18210.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=315bp
MPTATLPSRLRLSTCLPAIAVAQLFLRPGVNGLAFNFPAACSSGARSSTA
SATGPLMASSSSAAAAAAQDAMPFPTGSKPVKEMDSPRPKLWIYDHCPYC
VRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPVLELGRPGSEDHE
IMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPR
NAVTPLAEFQTRSAREAFVRNHPLPEPSSYEANLKASPKLIEELERELWK
LEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQDLGIPPKLRAYLDAV
SERVDVPLYDKIAS*
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mRNA from alignment at Ecto-sp6_S_contig9:1892233..1897563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18210.1 ID=mRNA_Ecto-sp6_S_contig9.18210.1|Name=mRNA_Ecto-sp6_S_contig9.18210.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5331bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1892233..1897563- (Ectocarpus species6 EcLAC_371)
GCAACGCATAAGACGAGAGCATGCCCACGGCCACTCTTCCCTCCCGGCTG CGCCTCTCGACCTGCCTGCCTGCCATTGCTGTGGCACAACTATTCCTGCG ACCCGGGGTGAACGGCCTGGCCTTTAACTTTCCTGCTGCGTGTTCGTCCG GAGCTCGATCTTCTACGGCTTCGGCGACCGGACCTCTGATGGCCTCGTCA TCGTCTGCTGCTGCTGCTGCTGCTCAGGACGCGATGCCCTTTCCGACTGG AAGCAAGCCCGTCAAGGAGATGGACAGCCCTCGGCCGAAGCTCTGGATCT ACGACCATTGCCCTTATTGTGTTCGGCCACGGTGAGGGTAGCATTTTGAA CAATAACGAACAAACGAACGTACGCATACAAGATTGTAGCAGAAGGAAAT TAGCACACCAGTTGAACACATGAAACAGCGGCGCCTTCTTCCACTCCCCA CTCCCCACTCTGTTGTTCGGGGACAGGGTAGGAGTTGTCCTTCGCTGGGG GGCACCGCGACTATTGATCAAGCGCTAGGAGGCCCTGCCATGTTGGGCCA GGACGATGCATGAAACCTACAACAGCAGTCAGCCGGGCACGCATAATCTC TTCGTGCGTACCGAGCGTGTGGCGACGATTCCTATTGTAGCTGCTGTTGT CTACACTCAGGCGGATCGTTGGATCGACGAGCCTCCTGCAGACATCATGA TGGCGGAGCCTCCTGCAGACATCATGATGGCGGGGCAATATGCACACCTG TAGTAATATCAGCAGTACTGCCGGTGCCAGCAGTACGATTTCTGGCTGGC TCGCACGTAGGCAGTACGGACAACCCCCCGCTCCCCACTCTCGATCTTTT CCATATTGCATTCGTGTTCGTATGCGGACTCCGGAGCACTCTGTATTAGT CAGGCCATCAGCCTGAGTCCCCGCACAAGCTACGAGTAGGTTCCGAAGTC GCATTATCTACATATCAAATCCTGCATATGCAATGTGATCAATGATGGAG ATTTGTAGTACATTGTACAATTATATGATGTTTGTTCTTTTTGCTGCTGC TGTCTCGCCGAGAGCTTCCAAAAATGTTGTATGCATAGAAGTATCATTTT ATTTCAGCATCTTCGTCGTGAAGTAGCTGAGCTTTGAAAATCGGTCCAGG GTGTGGTATCTTGTGCAACCTACGGTAAGCGAAAGTACGGACATCCGAGA ATATTTTCGGCTTGTCAAGCCTTCTCTTACATAGTAGACGGCACTGCTGT GGAAGGGCCTGGGAAAAGCTGCCCACAATCTCTTTCGGACGAAACTAGCC GCTCACTCCCCTCCGTGTGCGTGTCCTGTTGAACAAGCGAGGGAGCACGG CGCACACACCAGTAAACAGGCTCAGAGTAGTCAACCCTTGTCCAGAGGCT AACTCCCGTATCGGATCGGTTGCATGAACCGACATGACGTCGAGGGTCGG GAACTTGGCCGCAGCATTACACCCACGCGTTTGTTGTGCGCTGCTTTGAG CTTGAGTCCTCCCCAACCCCGACCCCGGCTTCAACTCCCTACGAGGATAG ACGCTAACCGCCCACGTTCGCTCCCCGCCTTGCCGTCCAATCGCACGCAA TTCAGCATGGTTTTCGGGCTCAAAGGGATCACGCACGACCTGGCGTACCT CTCGAACGACGACATCGAGACGCCAACCGCCATGGTCGGCAAGAAAATGG TCCCGGTTCTCGAGCTCGGCCGCCCTGGGTCCGAGGATCACGAGGTGCGT TGTGTTATTGTTGGTGTTGTTGCTGCTGCTGTCTTCACTGTTTGAAAACA ATTCAGACCTTCTGTATTGACACCTCTCGGCAGTTTATTTCTGTGTTCAG TTGCAAGGAGACCGTGTTCTAGAGGGTCTCGCGTCGGATAGGGTTGGGAA GGGTATAGCAGTGCTCGCGTCGTTGTTTTTTACGCCATCCCCCCCCCCCC GGTGTTTTTTTCCATCGGGATTAGGTTTTCGTCGCTTGGCAACGACGTTG TGAAACAAGCCACTTCACTTCGTGAACTCGGCAACCAGGTTACCGTTTTT TTTTTTACCTCTGGTTTTTTTTTTGCGGTAACCATGAATGGTGGTCGAGT AGATCATGTTGTGCGGGGTCAAGAAGCCTCAATCCGTGCATGGGGGATGA TCGCACCACGTTGTGTCAAATTGGTCAAGCACCCTCGAGGCAGTTACACA GTGCTTACAACTGTCTCTGGAAGTGAAAGCACCAGAAAATATATTTAGTC ATACGTAGCTGTCATCCGTATGCAAGGAAGTAAGCACAAGATGCCGAACA CCCTTCGCAGGATGCAGCTCACCCTTCATGCGACTCGCCGAATACCTCAC GGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCG TGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCGATGGTCTAACGACTAC GGCATGCACGACTATGAGTACACCCCCCCCCCCACCTTTATGCTGTATTC CATAGCCCTTTTGCCTCTTTCGTATCTGATCGTCACACGGATATATACCC ATTCATGCATAACACTCCAGTTATCTGCTTGTTACCTTTTGTATACATAG GAGGTTTGATCCAAAACCTAACCATCTCGTGTTATTTCATCAGTTGCTAC CAGCGCGGGGGGGAATTTTTTCGTCTTGTCTTACATCGGGTCGCTTTTAC ACGTGTGGCCTTGCCTCCTTTCGCGGAACGTGCCTACCATTACCAGATCA TGGCCGAGAGCATGGACATCGTCAAGAGGCTGGACTTGGACCCCCAGTTC GGGCCTCCCGTGCTAGCCCCCGCCGTCGACCGCAAAGACCTGGACGGTTG GGTTTCCTCCGCAGCCATGCTGATGCGGCGCCTCGTTCGTCCGAGGAACG CCGTCACCCCTCTCGCGGAGTTCCAGGTGATAATTCTTGTACCTTCATGG GGACGTTTGTTGCTGATGGTATTCTGTGTCTTGCCTTGAATTTTTTGAGG GGGGGGGCTCGGTTTTGCCGTGGTTGTAGCAGTCTGGTTCGGTTGTTGGT CGATAGCTGTTGCTCGACATACATACGGAAAGCCTCACTTCGCGAACTTA CCACCACCTTCAAGGCTGCATGGCTTTTTGCCATGACAGGCGTTCTTGTT CACTTGGGGGGAGAGGGCAATGCGTTAAGCGCACACAGAGAGACAGATGA GCGGGACTGCTGGGCGTAACTGCCAAACACCTCCGGCGCAACGCAGCCGA AGGTTGTCTTGTGCGGGGTTACACTGCATAACTCAGATGGATGGCAGGCG TACAGGCAGCAACGAGTCAACCTTAACTTCGTCCCCCGTTGCCCTGAGTT ATCGCGCCGGTGTATACCAACCATGTTTACAACAACACCCGGCGCGCGCT GCTTACTCCCTGCTGCAGACCCGATCGGCGAGAGAGGCGTTTGTCCGCAA CCACCCATTGCCGGAACCGAGCAGCTACGAGGCCAACCTCAAGGCGTCGC CAAAGCTGGTAAGTATTGTAGTTTAAGCCTTATCGTCATGTTTGCATCGT TGTCGTGTGTTTTGTTCTCCCCGGCATCAGTCCGCCGTGCGATAACCCTG GCCGTCTCTACGCTCTAAGGCGATGCTGGTGGTTCCTTTTGACAAGCAAA TCTGCCAGTTTTAACCGCGAGACTGTTATTGCAGAATGCCCTACCGAAGT CAACGCGCCGCCTCCACTGCCAAGCAAGTGTCTTCCCTGTCTCCGCCTGC TCAAAGCGGCGGTGCACAATCTCAGGTGGTGGGAAGACACACGGGCTAAG CGTTGGGGGGAAGGGTGTGTGTGTTTTTTCTGTGGTTTGCCTTGGTTATT TTTATCGGGGACCGCATCCCTTTAGGGACGGAGGATCGCTATCACTCCAA TTGCGGGAAGACAATCAACTCTCCGATGTGTACGAAGTGTACTACTGCTC TGCCGTACTTGCTGGTGAAGGGGTTGTGCTCCTTTCCCCTGTAATTCTTC GCCATATGGGGTGCGTGTGCCTCATTTGCTCCTGAATTCTTCGTCATTGG CGGCCACTAAGAAAGCATGGGGGGCGAGGGCTGTACGAGTCTCGCTCGAG CGCGCCGCTTCTTCTCGCGTCTAGGAAGACGACACAAAGAACATTCTTCT TGGTAAATGGGCCACACCCCACAATATATCTGTGCCACAGAAGTACACGT TGATGGTGGCAGGAGTACACCCAGCAACCTTATCCTCGTCGAACGCGCTC GTTTGTTTGTCCTTGCTTGAATGCTGACACCCGCCCCCGAACCGAACCGG CAGATCGAGGAGCTGGAACGCGAGCTGTGGAAGCTTGAGGGCATGATCCA CAGCCCCACCAGCGTGGCGGCGGACGGGAAGCTGTCGTACAACGACGTGG AGTTTTTCCCGCGCATGCGTGGCCTCACGATCGTGCAAGACTTGGGCATC CCACCGAAGCTGCGAGCGTACCTCGACGCCGTCTCGGAGCGCGTGGACGT ACCGCTGTAAGTGTTTTTTGTTTGTTTTTTTGTCGTCTTCATTTTTTTTT TATTCCCTTGCTCGGAACTCTCGCACCCGCTTGAGGGTTGGATTTTTTTT CTTTTGCCTCCGTTTTCGATGCTTTTCCCTTGTGCTTGATTTTTTTCCCT TGCTCGCTCGGATATTTCACATCATCTTGAGGGTTGAGTTTTTTTCTTAT CTGCGTACATTTCGATGGATTTTTCATTGTCCTTGATTGAGATCCGTTCC CCCCTTCAACTCCTTCAACTCTCTAAATGCTTGTTCGGGTATCGGTTTTC CTCCCTGTTGTCTGTTTCCTCTCTCTTAGATTTTTTCGTGTCCTCTTTTT CGTTGATGGCTGGAAATGACTGTTGCATAAGCAGCCATTTTTTTCCTTTC GAGCGCGGCAATGCAGAAGCCTCACAGCACTAGCTAGTCTCATGCGTTAG CCTCGTGCTGACATTTTTTTTTTTTTTTTTTCTCATAAATCGTTAGCCTC GTGCCGTTTATTCCAACCCGACATTACCAAGGCGTGGATATGCGCCGGTG AGAGCACTTGTGTTGCATGAGTTATTGAATGTTAGCAGCTAAACCCTCCC TTGTTACGTCCCGCGGCATCTACTTTTTTCCCCCTCCCTACTGCAGGTAT GACAAGATAGCTTCGTGAAGAAGATTCGGGGCATGAGCACGGCGTTGTGA AAAGTAGTTGGCGTTACGTGGAGGAAGAGCGCTCTCTCGCTCGCTCTGGC GTTTTTTTGGGCCATAGGCGGCGGCAGGACAACCACAAGACGGCGCGGTA GCTTCACGGCTTCCCGTTTGGAGTTTCTTGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1892233..1897563-

>mRNA_Ecto-sp6_S_contig9.18210.1 ID=mRNA_Ecto-sp6_S_contig9.18210.1|Name=mRNA_Ecto-sp6_S_contig9.18210.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1892233..1897563- (Ectocarpus species6 EcLAC_371)
ATGCCCACGGCCACTCTTCCCTCCCGGCTGCGCCTCTCGACCTGCCTGCC
TGCCATTGCTGTGGCACAACTATTCCTGCGACCCGGGGTGAACGGCCTGG
CCTTTAACTTTCCTGCTGCGTGTTCGTCCGGAGCTCGATCTTCTACGGCT
TCGGCGACCGGACCTCTGATGGCCTCGTCATCGTCTGCTGCTGCTGCTGC
TGCTCAGGACGCGATGCCCTTTCCGACTGGAAGCAAGCCCGTCAAGGAGA
TGGACAGCCCTCGGCCGAAGCTCTGGATCTACGACCATTGCCCTTATTGT
GTTCGGCCACGCATGGTTTTCGGGCTCAAAGGGATCACGCACGACCTGGC
GTACCTCTCGAACGACGACATCGAGACGCCAACCGCCATGGTCGGCAAGA
AAATGGTCCCGGTTCTCGAGCTCGGCCGCCCTGGGTCCGAGGATCACGAG
ATCATGGCCGAGAGCATGGACATCGTCAAGAGGCTGGACTTGGACCCCCA
GTTCGGGCCTCCCGTGCTAGCCCCCGCCGTCGACCGCAAAGACCTGGACG
GTTGGGTTTCCTCCGCAGCCATGCTGATGCGGCGCCTCGTTCGTCCGAGG
AACGCCGTCACCCCTCTCGCGGAGTTCCAGACCCGATCGGCGAGAGAGGC
GTTTGTCCGCAACCACCCATTGCCGGAACCGAGCAGCTACGAGGCCAACC
TCAAGGCGTCGCCAAAGCTGATCGAGGAGCTGGAACGCGAGCTGTGGAAG
CTTGAGGGCATGATCCACAGCCCCACCAGCGTGGCGGCGGACGGGAAGCT
GTCGTACAACGACGTGGAGTTTTTCCCGCGCATGCGTGGCCTCACGATCG
TGCAAGACTTGGGCATCCCACCGAAGCTGCGAGCGTACCTCGACGCCGTC
TCGGAGCGCGTGGACGTACCGCTGTATGACAAGATAGCTTCGTGA
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