mRNA_Ecto-sp6_S_contig9.18194.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18194.1
Unique NamemRNA_Ecto-sp6_S_contig9.18194.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18194.1 vs. uniprot
Match: A0A6H5KJF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.940e-45
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 2 
Query:  287 MGNHDRPQTTKSVLINMWSTLTIFLPIFIIVRFDLLWDLLMVWAAATSIMMVVPPVGWIRPHPYSDFLWNRRRSRAD 517
            MGNHDRPQTTKSVLINMWSTLTI LPIFIIVRFDLLWDLLMVWAAATSIMMVVPPVGWIRPHPYSDF+WNRRRSRAD
Sbjct:    1 MGNHDRPQTTKSVLINMWSTLTIVLPIFIIVRFDLLWDLLMVWAAATSIMMVVPPVGWIRPHPYSDFVWNRRRSRAD 77
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BLAST of mRNA_Ecto-sp6_S_contig9.18194.1 vs. uniprot
Match: A0A835Z948_9STRA (Sulfotransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z948_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.360e-18
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 2 
Query:  275 KGGVMGNHDRPQTTKSVLINMWSTLTIFLPIFIIVRFDLLWDLLMVWAAATSIMMVVPPVGWIRPHPYSDFLWNRRR 505
            K G M  HD+PQT KS++IN+WS ++I  P+ +IVR +    +L VW A T +MM+VPP GW+RPH YSDF WNRRR
Sbjct:  362 KSGRMAKHDKPQTLKSMVINLWSLVSILGPMVLIVRMETWQAVLAVWVAVTLLMMIVPPFGWLRPHAYSDFEWNRRR 438
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BLAST of mRNA_Ecto-sp6_S_contig9.18194.1 vs. uniprot
Match: A0A7S2A8U7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8U7_TRICV)

HSP 1 Score: 54.3 bits (129), Expect = 7.480e-6
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 2 
Query:  299 DRPQTTKSVLINMWSTLTIFLPIFIIVRFDL----LWDLLMVWAAATSIMMVVPPVGWIRPHPYSDFLWNRRRSRAD 517
            DR    KS+ IN+ +TL  FLPI     FD      +  ++ W+ A +++  +PP GW+RPHPYSDF WN+     D
Sbjct:   35 DRGLDPKSIAINIATTLFFFLPI--AAYFDASNARFYCEVVGWSMALALL--IPPFGWLRPHPYSDFAWNKPVGHRD 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJF0_9PHAE1.940e-4597.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z948_9STRA1.360e-1855.84Sulfotransferase family-domain-containing protein ... [more]
A0A7S2A8U7_TRICV7.480e-640.26Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1751564..1756141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size930
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_001320.1
Cds size234
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18194.1prot_Ecto-sp6_S_contig9.18194.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1752530..1755731 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350535.6009421-UTR-Ecto-sp6_S_contig9:1751563..17516401682350535.6009421-UTR-Ecto-sp6_S_contig9:1751563..1751640Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1751564..1751640 +
1682350535.6102457-UTR-Ecto-sp6_S_contig9:1752320..17525291682350535.6102457-UTR-Ecto-sp6_S_contig9:1752320..1752529Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1752321..1752529 +
1682350535.6603062-UTR-Ecto-sp6_S_contig9:1755731..17561411682350535.6603062-UTR-Ecto-sp6_S_contig9:1755731..1756141Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1755732..1756141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350535.618773-CDS-Ecto-sp6_S_contig9:1752529..17525891682350535.618773-CDS-Ecto-sp6_S_contig9:1752529..1752589Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1752530..1752589 +
1682350535.6274514-CDS-Ecto-sp6_S_contig9:1753326..17533761682350535.6274514-CDS-Ecto-sp6_S_contig9:1753326..1753376Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1753327..1753376 +
1682350535.63612-CDS-Ecto-sp6_S_contig9:1754165..17542041682350535.63612-CDS-Ecto-sp6_S_contig9:1754165..1754204Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1754166..1754204 +
1682350535.6445668-CDS-Ecto-sp6_S_contig9:1755267..17552971682350535.6445668-CDS-Ecto-sp6_S_contig9:1755267..1755297Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1755268..1755297 +
1682350535.652461-CDS-Ecto-sp6_S_contig9:1755676..17557311682350535.652461-CDS-Ecto-sp6_S_contig9:1755676..1755731Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1755677..1755731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18194.1

>prot_Ecto-sp6_S_contig9.18194.1 ID=prot_Ecto-sp6_S_contig9.18194.1|Name=mRNA_Ecto-sp6_S_contig9.18194.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=78bp
MGNHDRPQTTKSVLINMWSTLTIFLPIFIIVRFDLLWDLLMVWAAATSIM
MVVPPVGWIRPHPYSDFLWNRRRSRAD*
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mRNA from alignment at Ecto-sp6_S_contig9:1751564..1756141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18194.1 ID=mRNA_Ecto-sp6_S_contig9.18194.1|Name=mRNA_Ecto-sp6_S_contig9.18194.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4578bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1751564..1756141+ (Ectocarpus species6 EcLAC_371)
GCTCGCAGCTTGCTCTGTGGTACGTACAAGAACAGACACACGCACCACCA
TCTGCCAACGCCGAACTGCTGTCGAAGGTAAGCAGGAAGTGTGCAAATGC
CATGCCGCCTACTGAACGAAAAGAGAGTTGAGCTTGCGAAGATATATGAT
TAGGGGTCGAAGTACGTGCATACAGCTGTGCACGGAGGGAGGTTCGAGTT
GTAGTAGTAGGAGGTAGGACTCTACTTGGTCGTTGTGTGCCGGCAGCCTG
TGCAGCAGCCACAAGACTATGACGGTTGTCCAATCACCAACGAGTTTCGG
GCAGCTGACGTGCGTGCCAGCTGCAGAAGAGCCACAGCTGGAATGGGGCT
TTAAGTACACAATACCCCAAAATCCTCCAAACGGGGTCCTTACAAGCAGA
TGCATGTACATGCATTAGTGCTGTTCATAGGATAGCTCAGCTTGCGACAA
GAGAGCCTCACAGCTCTCCGCCTCTGGCGTACCTATGTGTAACGAGGCGG
TTCCTTCAACGGTTAGCTTTCGGTCGTGGCACTAGTCTGTCGCCTCGTGA
CTAAGTGTGTCCATGGATCGTGGGCGGCGTTAGAACTTACAGCAGTACTC
CCGAGTATTTAGTAGTCAGCCATGTGCAAGTTGATGTTATTTCATGACAC
ACATCCAGCCGTGGACTTCAAGAGCATCGAGCAAAAGCACGCCGACACCG
CAGCCGCTCAAAGCATGCCTTCCCCCTCTCCTGCTGTGTTACCTTTGTTC
CGGGTAGCTTCAAGGCTCTTGGCATCCTGGATCGAGATCTAACAAGGAAC
TCAAACATCACCCAGGGCACCAAGGACGGGGCGACAGAGACAGGGAAAAG
CATCACATAAGAGCCAGCGGCGGCGGGTCGAGAGAGAAAGACAGCCTTGA
GAGGTTGTGAGTTGCGCGGCCGGGAGTAGACAGAGCGAGAAAAGGGAGAG
AGGCAAGGGCGGAGTTATGGGGAACCACGACAGGCCCCAGACCACCAAGA
GCGTCCTCATCAACATGTGGTCTACGGTAAGAGAAGAAGAGGGCAGCAAA
CGTGATGCCGACAAGGCAGTGCTGCTAGAAGAAAGTGTTCTTCGAGTGAC
TGCTGTTCTAATAGGTCCTGCATGCGTAGGGGTGAACACGGAAGTGTCCT
ATGCGTATGCCACAAGGTGATCGTTCTAGTAGGCGGCCGAGCCACGAGTC
TTGGAATCGGTCAGACTTTTCGCAGTCCCAGGTTGCGAGGTGACCCCAGC
AGTCTACCGGCAAAGTGTCATGGACAAGCTACCACCTCGCTCTTGTGAAT
TACTCGCCGCGGAGCTTGCTCACCTCGTGATGCTGTTTGCTTCATCCATC
CCGTGTATTGTCGACGCTACTGTAGATTTCCTCCTTCTCCTAGCCAATAA
CTCGTGTTGAATCTACGTATATGTATGTAGAGCCGGAATCACAACTTGCT
CCAAAAAATAGGCGGTCTGCCCATATCAAGGATGAAGCCCGTGATTGGTC
GAGGGCACGAGCGTGAATTAACCATCGAACAACAAGCCCTCGAGGTTCTC
CGAACCAAAGAGGCCAGAAAAATTTAAAACCAGCAAAATAATTTTGACCT
TCCGCGGCACTAATATACTTAGTATATTGCACCTCCGCCCTTCTGTCTGC
TCTCTTGCACGTACCGCCCGCACTCTCTGCTGTTGTGTGTCCTCATGTTA
CGTGTGCGGTCGTGGTGATGTGTGTCGTTTTCTGCCGACGCCATCGGCGG
TTGGTGGCTGTAGCTGACCATCTTCCTACCAATCTTCATCATCGTCAGGT
TCGATCTATTGTGGTGAGTGAGGGAGTGAGGGCGTGAGGCAGCTGGCAAG
ATGGGGACAGCCTCAAGCCCGTGCGTCCGGCCAGCGTCGAAAATGTTTTT
TTGGTGTCAGTGCGCGCCGAAGCTATGAGTTTAGCCCCGTCCACCATCCT
ATCACTGGTCTTCGGTTGTTTTTATTTCATCCGCATGGTTCTCTACACGC
CAGCCCTGATCTCTCTGCTTCAAGCTCTGCGGTGAAGTGACTGCAGCTCA
AGTTTTGTGCTACATTTTATCGATCATCAATAGATACGGTCGGCTGTTGA
GCTATGGCGGGGAGGGCATGGGGCGAACCTTGATCGTTCGGCAGGAGCAG
GCGGATGGCGCGAATGCATTCAAGCGTCAAGGGTTGCAGGAGAACCGCCT
GCAGTTTTCGCCTTACGAACTCTGGCAAACCGTCGTATAGTAGATAGCTG
CCTTCATTGATGGGGGTCCGCAACAAAGTAATTGTAGGTACTCCACGGTG
CTCGGCAGAATTGTCTTGAAGTTTTATCCCTGAGCGGGACGGAGCAGTGT
TTACCCGCTCCCGCTCCGTGAACGTCACTGGAAAATAGTATGCAGCAGCT
TAGGATTGCCGGTTTTGAAACCCGCTCCGTGAATATCGTTGCGACCTCGT
CGTACCGCAGGATGACCACCCGCTGTGTTAACGCCGTCATCTTCCTTTTA
TTTCTTGCCCCTTCCACCCCTACCGTATCTTTGTTCGCGTCTCCCCCCGG
TGGCGCCTTCGTGCGTGTGTTCGATTGTTTGAACTACCACGCGGCTGCGC
AGGGATTTGCTAATGGTGTGGGCGGCAGCAACATCGATCATGTGAGAGAC
AGAGAGCACGTGGGTGTGGAAAACGAAGTGTTTCGCCGGTGCACCTACCG
AACAAATTCTTCGTTTTCTTCTTTTTTTATTATTTAGTTGAAGGAGCACG
AATAGCCCTGGTGCGAGTATCGGGCTATCTGTCGAGACTAATGCTCTTCG
ATATGGAGCATGACTAACTGCTGTCTGAGTAGCTGTGACTTGGTCTATAG
TGGGCATGTCATAACCGGTGTCTGGCACACTTGTCGTGACCTGTGGGCAC
ACGCCGTTGTAGGGTCGGGACTTGGAGCGCTGGCCTCTGATCCGCCGCCC
GCCGCGCTTCTGCGTTTGCGTCCTCTCTCGGCCCATCAGAAACTATTCTC
TGCCGCCATCTGCCCACTGCTGTCCTTCCGTCTCTTTTCACGTGCTCTAT
AGCTACAGCAAATGCGTGCTATCCTCCACGGAAAAGACAGAAAGAGTATC
GGAGGTTCTTCCTCTCTGGTGACCCCGGGTTTCCGAGAGAACATGAGGCG
TTGGATTATTCTGGTTAGCATTAAATGTCCGTTTATTCTGTCTGTGCGAT
AAAGAAAACATTCTCTCGTGGGAAAACTTGAAGGCAAGCGCCGCGGGAAT
ACAAGGTGGAGCAAAAAAACGAAACTTCTGTGTTCCATTCCTTCCTATGG
TGCGACTCTGGCTGTTGCCCAGAACAGTAGACGGGGGCGACATACCGTGG
GGGGAGGCTCAAAAACGTCGGTATGTGCCCAGCAACTTCACCGGCGCTAC
TCAGGGCCACCGGCGCTACCCAACCGGCGTTATTGACGCCCCTCCACTTT
ACACAAAGTCGTTGTCTTTGAAGCTCGACGCACCCCCTCAAATAGTTTAC
CTACGTGAAGTTCTTAAACGCAAATTTCGGCGTTGTTGTCCATCTAACCC
TTCGGTGTCCCATATTCCTTGCCCGCGTTTCCACTTCCCTTGTATTTTCC
CCTCGCCCGCCTGTTCTCTCTCCCGCCCGCGTTATCTTTCTCTACACGAT
GCTGTGTGACCCGTGCTGCCTTCTTGCACGGCCTCTCGTCGTCTCTTACT
GTAGGATGGTCGTGCCTCCTGTGGGATGGATCAGGTACGGTACAAATGAC
ACCGATGTTTGCGAGAGCGTTGGCTGTAGCTGACTTGTTTTGCGAGACGA
TTGGGTACCAGAGATTTTGGAGGAGGGGGGTCGAGGACTGCTGTGACTCC
CCTCTCCGAAATGCAACGCAACGTACGCCCGTTGCTGTCGTTGGCAACAC
GCCGCATTCCCGTAGGCTTTTATTGGTCGGGGTAACCTCTCTCTCGTGCC
CGCCTCACGCCGCCCCCAATTCCCATCGTGTCTCTTTTTAACGTGCGTGT
GTTGCTTGATTGGTCGCTCATTTGTCTCCTTCTCTTGCCCCTTTTTTCGC
TCCTCTTTGCTTCACCCCCATCCGCTTGTGTGCGCAACCCGAAACCGTTT
GCGGGGAGTGCAGGCCACACCCGTACTCAGATTTCTTATGGAATCGCCGC
CGGTCTAGGGCCGACTGAAGGGCTGAAGCGCGATAGATGAGGGACATCAA
CGACAACGAGACATGGGTGGAGGAGGGTTTTAGACTGATGGTAACGCACG
TGCGTTGGAGCGGAGCGGAGGAGATCTTCCACGAAAGCCAGAACGAAGAT
CAAATGGAGAAGACCGGAGATATTTCCTGCACGAGTGGTGGTCGTCCCCC
CGGGAAGTAAGCCTTACAACTCCAAGGGAGGCTGATCGACCCAAGACAAA
GTAACTAAAACGTCGGTCGTCATGGCATGTTCTTTCTGTCTTCACTACTT
CGCTGCTGCAGCAGCGCCCAGCCGCCCTGCTGCCGAGCTGGTTGAACGCC
ACAGTAAGTACTTCGTGGCTCAGATGGCTCATGGAGAGGCATGGTAGGAT
ATGTAGCTCCCTCGTATGGCGGCTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1751564..1756141+

>mRNA_Ecto-sp6_S_contig9.18194.1 ID=mRNA_Ecto-sp6_S_contig9.18194.1|Name=mRNA_Ecto-sp6_S_contig9.18194.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1751564..1756141+ (Ectocarpus species6 EcLAC_371)
ATGGGGAACCACGACAGGCCCCAGACCACCAAGAGCGTCCTCATCAACAT
GTGGTCTACGCTGACCATCTTCCTACCAATCTTCATCATCGTCAGGTTCG
ATCTATTGTGGGATTTGCTAATGGTGTGGGCGGCAGCAACATCGATCATG
ATGGTCGTGCCTCCTGTGGGATGGATCAGGCCACACCCGTACTCAGATTT
CTTATGGAATCGCCGCCGGTCTAGGGCCGACTGA
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