mRNA_Ecto-sp6_S_contig9.18192.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18192.1
Unique NamemRNA_Ecto-sp6_S_contig9.18192.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: A0A6H5KLH5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH5_9PHAE)

HSP 1 Score: 603 bits (1556), Expect = 3.060e-216
Identity = 322/352 (91.48%), Postives = 331/352 (94.03%), Query Frame = 1
Query:    1 MAVSGRTGVAACKLLMRARVQRQACAASNRARPLQPQRPSFRQEDVLYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRS-----RGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEVFGDQPVTGSVVECARGDH 1041
            MAV+G  G+AACK+LM+ARVQRQACAAS+RARPLQP+RPSFR EDVLYMDNHVLLVNKPAGLLSQSDRTGD DVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARD VEKIYHAVVAG LAGRGIRQD LVSPDASGAVARRGRGPRTGLSS P RG AGGRLLAAGPTSS +GKLAQLEWEAI+VSPSSA RLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRS     RGGD TDESAVPPPR AG MEPLEDRSILLHASELIVPHPTRVGA VRAVAAPPGMWSDLCGRSCIDEVFGDQPVTGSVVECARG+H
Sbjct:    1 MAVAGTRGMAACKVLMQARVQRQACAASSRARPLQPRRPSFRVEDVLYMDNHVLLVNKPAGLLSQSDRTGDADVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQDFLVSPDASGAVARRGRGPRTGLSSAPVRGGAGGRLLAAGPTSSSEGKLAQLEWEAIDVSPSSADRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSSWCQSRGGDATDESAVPPPR-AGSMEPLEDRSILLHASELIVPHPTRVGAMVRAVAAPPGMWSDLCGRSCIDEVFGDQPVTGSVVECARGEH 351          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: D8LGZ5_ECTSI (23S RNA-specific pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ5_ECTSI)

HSP 1 Score: 459 bits (1181), Expect = 7.290e-161
Identity = 238/244 (97.54%), Postives = 239/244 (97.95%), Query Frame = 1
Query:  322 MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEVFGDQPVTGSVVECARGDHFDVT 1053
            MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPR GLSSVPARG AGGRLLAAGPTSSPDGKLAQLEWEAINVS SSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGD TDESAVPPPRRAGR+EPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEVFGDQP TGSVVECARGDHFDVT
Sbjct:    1 MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRAGLSSVPARGGAGGRLLAAGPTSSPDGKLAQLEWEAINVSSSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDATDESAVPPPRRAGRIEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEVFGDQPATGSVVECARGDHFDVT 244          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: UPI001420CA78 (RNA pseudouridine synthase n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001420CA78)

HSP 1 Score: 164 bits (415), Expect = 2.910e-45
Identity = 114/273 (41.76%), Postives = 141/273 (51.65%), Query Frame = 1
Query:  133 DVLYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMW 951
            DVLY+DNH+L+VNKP GLL+Q+D TGD DV  L + +++    K G  F+ LVHRLDRP SGVM +ARTSKAAARLS  FR R   EK Y A+V G   G G   D LV                             GR +   P + P  + A+L W  +  +   A RL         +LV VRL TGR HQ+RVQLA  GHP++GD RYG SR                    PL+ R++ LHA  L + HPTR    +  VA PP  W
Sbjct:    4 DVLYLDNHLLVVNKPPGLLAQADHTGDPDVLTLGKAWLKARFGKPGRVFLGLVHRLDRPASGVMVLARTSKAAARLSDQFRRRLP-EKRYLALVEGVWTGAGTAVDHLVKA---------------------------GRTVRVVPATHPGARRAELAWRVL--ATDEAERL---------SLVEVRLETGRPHQVRVQLAHRGHPLLGDFRYGASR--------------------PLDGRNLALHAYRLGIEHPTR-RVPMHWVAPPPAAW 216          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: A0A3M1NPK6_9BACT (RNA pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1NPK6_9BACT)

HSP 1 Score: 160 bits (405), Expect = 8.350e-44
Identity = 110/270 (40.74%), Postives = 138/270 (51.11%), Query Frame = 1
Query:  133 DVLYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHPTRVGATVRAVAAPP 942
            DVLY+DNH+L+VNKP G+L+Q+D TGD DV  L + Y++    K G  F+ LVHRLDRP SGVM +ARTSKAAARLS  FR R   EK Y A+V G+  G G   D L+                             GR +   P + P GK A+L W  +     S  R+         +LV VRL TGR HQIRVQLA  GHP++GD RY                    G  +P + R++ LH+  L + HPTR  A    V  PP
Sbjct:    4 DVLYLDNHLLVVNKPPGMLAQADTTGDTDVVTLGKAYLKERFQKPGNVFLGLVHRLDRPASGVMVLARTSKAAARLSEQFR-RHSPEKRYLALVEGAWDGNGTAVDHLLKV---------------------------GRTVRVVPATHPGGKRAELAWRVLG----SDGRV---------SLVEVRLTTGRPHQIRVQLAHRGHPLLGDLRY--------------------GARQPFDGRNLALHSWYLGLEHPTRRVAMAWHVPPPP 212          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: A0A259TYX9_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubricoccus marinus TaxID=716817 RepID=A0A259TYX9_9BACT)

HSP 1 Score: 157 bits (396), Expect = 2.390e-42
Identity = 116/279 (41.58%), Postives = 144/279 (51.61%), Query Frame = 1
Query:  133 DVLYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGR 969
            ++L++DNH+L+V KPAG+LSQ D TGD DVA  A+ +++   NK G  FV LV RLDRP SGVM +ARTSKAA+RL+  FR R  VEK+Y A+V G L G G  +D L     +                       G R+     T+S   K A LEW A+              T   RTLVRV L TGR HQ+RVQL  +GHP+VGD RY            A P P   G        SI LHA+ L + HPT+     R  AAPP  W +   R
Sbjct:    4 EILFLDNHLLVVAKPAGMLSQGDSTGDRDVANWAKAFLKREFNKPGNVFVGLVQRLDRPASGVMVLARTSKAASRLTEQFRKRS-VEKVYLALVEGKLEGSGRLEDWLFKTHDT---------------------ETGTRVKRVSSTTS-GAKKAVLEWRALA-------------TVRGRTLVRVVLETGRPHQVRVQLGGIGHPIVGDLRY------------AAPVPLGDGH-------SIALHAAHLALDHPTQKDRR-RFTAAPPPAWGEDFAR 226          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: A0A848XZP8_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZP8_9BACT)

HSP 1 Score: 155 bits (392), Expect = 6.250e-42
Identity = 111/273 (40.66%), Postives = 147/273 (53.85%), Query Frame = 1
Query:  133 DVLYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMW 951
            +VLY+DNH+L+V KP GLL+Q+DRTGD D+    + +++   +K G  F+ LVHRLDRPVSGVM +ARTSKAA RLS +FR R  VEK Y A+V G ++G G R+D L+  D  G V                      R+++A     P GK A L W+A+        RL         +LV V+L+TGR HQ+RVQLA +G P++GD RYG +R                     L+ R++ LHA  L   HP R    V   A PP  W
Sbjct:    2 EVLYLDNHLLVVVKPPGLLAQADRTGDTDLLTQGKAFLKEKFDKPGNVFLGLVHRLDRPVSGVMVLARTSKAAGRLSKAFRERR-VEKRYLALVEGRMSGAGEREDYLLKED--GRV----------------------RIVSA---DHPKGKRAVLRWQALG----EEGRL---------SLVEVKLLTGRAHQVRVQLAALGTPILGDFRYGATR--------------------ELDGRNLALHAYRLAFEHPVRREPLV-FTAPPPVSW 212          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: A0A7K1ZH14_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium SB0668_bin_1 TaxID=2604896 RepID=A0A7K1ZH14_9BACT)

HSP 1 Score: 154 bits (390), Expect = 3.020e-41
Identity = 115/292 (39.38%), Postives = 148/292 (50.68%), Query Frame = 1
Query:   97 PLQPQRPSFRQEDVLYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHP-TRVGATVRAVAAPPGMWSDLCGR 969
            P+ P+RP      +LYMDNH+L+VNKP G+L Q D T D D+  L + Y++    K G+AF+ LVHRLDRP SGV+ +ARTSKAAARLS  FR R   EK Y A+V G   G G  +  L       A + RG                G R++ AG  S   GK A+L+W ++ V              +  +L+ VRL TGRKHQIRVQ +  GHP++GD RY                    G +  L+ R++ LHA  L V HP TR   T      PP  W  L  R
Sbjct:   13 PVDPKRPDLH---ILYMDNHLLVVNKPPGMLVQQDETNDPDLLRLGKRYLKETFAKKGQAFLGLVHRLDRPASGVVVLARTSKAAARLSDQFRQRTP-EKEYLALVEGVCRGSGTLRHTL-------AASVRG----------------GVRIVPAGDAS---GKEARLQWRSLGVQ-------------DDLSLLSVRLETGRKHQIRVQFSAEGHPILGDFRY--------------------GALRELDGRNLALHAFRLTVAHPVTRERMTF--CTPPPPAWGTLFAR 239          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: A0A800M4B4_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4B4_9BACT)

HSP 1 Score: 151 bits (381), Expect = 3.800e-40
Identity = 110/274 (40.15%), Postives = 139/274 (50.73%), Query Frame = 1
Query:  133 DVLYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLED-RSILLHASELIVPHPTRVGATVRAVAAPPGMW 951
            DVLY+DNH+L+V KPAG+LSQ+D TGD+DV   A++++R   +K G  F  LVHRLDRPV G M +ARTSKAA+RL+  FR R   EK Y A+V G L G G   D L+            R P+ G      R    G             K A + W + +V                R+LV V L TGR HQIRVQL+ +GHP+VGD RY                    G   PL D R I LHA+ L + HPT+        +APP +W
Sbjct:    4 DVLYLDNHLLVVAKPAGMLSQADDTGDLDVVTWAKDFLRREFDKPGNVFAGLVHRLDRPVGGAMVIARTSKAASRLAEQFRQRTP-EKRYLAMVEGRLDGSGRETDWLLKT----------RDPKRGTRVKRVRQGTDGA------------KRAVMTWTSRSVL-------------GTRSLVEVGLETGRAHQIRVQLSGLGHPIVGDLRY--------------------GAEAPLGDGRGIALHATHLTIEHPTKRDRRT-FTSAPPRVW 220          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: A0A271J2Z8_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J2Z8_9BACT)

HSP 1 Score: 150 bits (378), Expect = 8.910e-40
Identity = 107/275 (38.91%), Postives = 139/275 (50.55%), Query Frame = 1
Query:  139 LYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLED-RSILLHASELIVPHPTRVGATVRAVAAPPGMWSDL 960
            LY+DNH+L V+KP GLL+Q+DRTGD D+ +LA+ Y++   +K G  FV LVHRLDRP SGVM +ARTSKAA+RLS  FR R   +K Y AVV G     G   + + + D  G                      GG +                +   +     +A+R R     + R+LV V L+TGRKHQIR QLAE+G P++GD RY                    G   P  D R + LHA  L+V HPT+    V  VA PP  W+ L
Sbjct:    4 LYLDNHLLAVSKPPGLLTQADRTGDPDLVSLAKAYLKERFDKPGNVFVGLVHRLDRPASGVMMLARTSKAASRLSDQFRRRVP-QKRYLAVVEGDPGDGGAWTERVDAIDKGG----------------------GGSV----------------DVVPVGEGQRAALRYRTLARDSARSLVEVELLTGRKHQIRAQLAELGAPILGDFRY--------------------GNQTPFADGRGVALHAYRLVVEHPTK-REPVTVVAPPPEAWAGL 218          
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Match: A0A1M6P7L7_9BACT (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6P7L7_9BACT)

HSP 1 Score: 149 bits (377), Expect = 1.650e-39
Identity = 120/292 (41.10%), Postives = 148/292 (50.68%), Query Frame = 1
Query:  136 VLYMDNHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRLDRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQLEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEVFGDQPVTG 1011
            VLY+DNH+L+VNKPAGL SQ DR+G   V +L +  ++   NK G  ++ LVHRLD PVSGVM +ARTSKAAARL   FR R  VEKIY A+V G L G G+ +D +                       PAR     RL++A     P GK A L WEA+              T N  TLVR+   TGRKHQIRVQLA  G+PV+GD RY                  RA R   L    + LHA +L V HPTR    ++  A  P  W D   R  +D +      +G
Sbjct:    9 VLYLDNHLLVVNKPAGLRSQGDRSGAPTVLSLGKALIKERFNKPGNVYLGLVHRLDAPVSGVMVLARTSKAAARLMQQFRERT-VEKIYLALVEGELEGEGVWEDFI----------------------APARDHM--RLVSA---DHPWGKRAVLRWEALM-------------TRNGLTLVRLIPETGRKHQIRVQLAFRGYPVLGDRRY------------------RARRW--LAPGQMALHAWKLSVTHPTR-RERMQWTAPVPSCW-DSAFRLKVDRLLAYLEASG 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLH5_9PHAE3.060e-21691.48PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D8LGZ5_ECTSI7.290e-16197.5423S RNA-specific pseudouridylate synthase n=1 Tax=... [more]
UPI001420CA782.910e-4541.76RNA pseudouridine synthase n=1 Tax=Rhodocaloribact... [more]
A0A3M1NPK6_9BACT8.350e-4440.74RNA pseudouridine synthase n=1 Tax=Bacteroidetes b... [more]
A0A259TYX9_9BACT2.390e-4241.58PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A848XZP8_9BACT6.250e-4240.66RNA pseudouridine synthase n=1 Tax=Rhodothermaceae... [more]
A0A7K1ZH14_9BACT3.020e-4139.38RluA family pseudouridine synthase n=1 Tax=Bactero... [more]
A0A800M4B4_9BACT3.800e-4040.15RluA family pseudouridine synthase n=1 Tax=Bactero... [more]
A0A271J2Z8_9BACT8.910e-4038.91PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A1M6P7L7_9BACT1.650e-3941.10Ribosomal large subunit pseudouridine synthase D n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1745475..1747497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score152.5
Seed ortholog evalue3.6e-34
Seed eggNOG ortholog886293.Sinac_1548
Preferred namerluC
Model size1098
KEGG koko:K06177,ko:K06180
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG free text desc.Pseudouridine synthase
EggNOG OGs2IZYH@203682,COG0564@1,COG0564@2
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_001350.1
EC5.4.99.23,5.4.99.28,5.4.99.29
Cds size1059
COG Functional cat.J
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350535.480385-CDS-Ecto-sp6_S_contig9:1745474..17456301682350535.480385-CDS-Ecto-sp6_S_contig9:1745474..1745630Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1745475..1745630 +
1682350535.4924176-CDS-Ecto-sp6_S_contig9:1746201..17463551682350535.4924176-CDS-Ecto-sp6_S_contig9:1746201..1746355Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1746202..1746355 +
1682350535.5041926-CDS-Ecto-sp6_S_contig9:1746709..17474581682350535.5041926-CDS-Ecto-sp6_S_contig9:1746709..1747458Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1746710..1747458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350535.5121636-UTR-Ecto-sp6_S_contig9:1747458..17474971682350535.5121636-UTR-Ecto-sp6_S_contig9:1747458..1747497Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1747459..1747497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18192.1prot_Ecto-sp6_S_contig9.18192.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1745475..1747458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18192.1

>prot_Ecto-sp6_S_contig9.18192.1 ID=prot_Ecto-sp6_S_contig9.18192.1|Name=mRNA_Ecto-sp6_S_contig9.18192.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=353bp
MAVSGRTGVAACKLLMRARVQRQACAASNRARPLQPQRPSFRQEDVLYMD
NHVLLVNKPAGLLSQSDRTGDVDVAALAREYVRVAANKTGEAFVALVHRL
DRPVSGVMCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQD
LLVSPDASGAVARRGRGPRTGLSSVPARGSAGGRLLAAGPTSSPDGKLAQ
LEWEAINVSPSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHP
VVGDTRYGRSRGGDETDESAVPPPRRAGRMEPLEDRSILLHASELIVPHP
TRVGATVRAVAAPPGMWSDLCGRSCIDEVFGDQPVTGSVVECARGDHFDV
TK*
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mRNA from alignment at Ecto-sp6_S_contig9:1745475..1747497+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18192.1 ID=mRNA_Ecto-sp6_S_contig9.18192.1|Name=mRNA_Ecto-sp6_S_contig9.18192.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2023bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1745475..1747497+ (Ectocarpus species6 EcLAC_371)
ATGGCGGTGTCAGGAAGGACGGGCGTGGCCGCCTGTAAGCTCTTGATGCG AGCTCGTGTGCAGAGACAAGCCTGTGCTGCTAGCAACCGAGCACGCCCCT TGCAGCCACAGAGGCCATCTTTTCGTCAAGAGGACGTGCTTTACATGGAC AACCACGTGAGCTGGACTGCTGTTAATGGGTCGTATGTCGTAGGTGGGTA TTGGTTCAGCAGCTTTCTCTCCCTCAGCTTACATCACCAAAGTATGAACG ATGCAACGTGTAGCTCAAGAGGGATGGAATCGCAAGCTCAGCTTCGCCCG AAAACGGGAAACAATTTTTGTGATGCGGCGGGACTGTCAGATCTTCACCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCT GTCTTTCTGCATGGGGTGCTCTCAATACGATGCTCACGATTTTGTGGTGC ACCAAGAAGCCATCCTCAGGACACCGAGATTGGTTCGTCCTGCCTTGTTT TTATCGCATGGTCTGCCTCCTATAGATGCTACAGCGTCATGCCCACGACG ATGAATTCGGGACCATAaatttcCCGCGCTCTTTCATCTCATTGTTTGCT CCTCATGGAGCATGTCAACGGCAAGAAACCAGCGTGGCCGCTGTTCAGGA AGATTAGCATATTCCTTGTTTGACGGCAGTCCTGGCTTGATTGCCGCGTT TGGTTTGGGCAACAACGGGACCGGTAGGTGCTTCTCGTAAACAAGCCGGC GGGGCTTCTGTCTCAGAGCGATCGCACCGGGGACGTGGACGTGGCCGCGC TTGCTCGGGAGTACGTTAGGGTGGCCGCGAACAAGACTGGGGAGGCGTTC GTTGCCTTGGTGCATCGCCTCGATCGACCAGGTGGGGAACGGCTGCTTGT TTTCCGCGGATTTAGTTTATAAGAGGACGTTTTTTATGTACATAATGACT TCATTGCTAATTTGTGCTGAATCCTGGACTCCTCTTTTCTGTCTGTGGAT AAGGACAAATTCGTTTGGTTTTGTACCTAACGACGATTCTACTCCATGCG TTTTGTTGTACGCTATCTGTCCAAAAATTTGATGATTTTGCCTGCTGCGA ACTCTGCAACGCTCCGGTGCGCGACGCGCGCACATTCAGCTCGCGCTCTG ACAGTGTACCCTCGCCCGCCCCACTCTTTCTCAAACTGCTGCTGTCAACC CGGGCTTGCTTCTGGTCGTTTCTGTTTTCGTAAAGTCTCAGGGGTGATGT GCGTGGCTCGCACGAGCAAGGCCGCCGCTCGCCTCTCGGCCAGCTTTCGA GCCCGGGACGACGTCGAAAAGATCTACCACGCCGTGGTAGCCGGCAGCCT CGCCGGCCGCGGCATCCGCCAAGATTTGCTGGTGTCTCCGGACGCGAGCG GGGCCGTCGCGAGGCGCGGCAGGGGGCCGAGGACAGGGTTGTCATCAGTC CCAGCCAGAGGCAGTGCGGGTGGTCGCCTGCTGGCCGCCGGGCCAACGTC ATCGCCGGACGGAAAGCTCGCTCAGCTCGAGTGGGAAGCGATCAATGTGT CCCCCTCGTCCGCCGTTCGGCTCCGTTGCCCTCGAACCGGGAACCCGCGA ACGCTAGTCCGCGTGCGGCTCATCACGGGGCGGAAGCACCAGATCAGGGT GCAGCTTGCCGAGATGGGCCACCCCGTTGTCGGGGACACGCGGTACGGTC GCTCTAGGGGGGGGGATGAAACCGACGAATCGGCGGTGCCCCCTCCCCGG CGGGCGGGCAGAATGGAGCCGCTTGAGGACCGGAGTATTTTGCTGCACGC GAGCGAGTTGATTGTGCCGCACCCGACACGTGTAGGGGCCACGGTTCGAG CCGTGGCGGCGCCGCCCGGGATGTGGAGCGACCTGTGCGGCCGTTCCTGT ATCGACGAAGTTTTCGGCGATCAGCCGGTAACAGGGTCGGTCGTAGAATG TGCTCGTGGTGATCATTTTGACGTGACAAAATAACCTGTCTCGGACGTTG TTGCAATGTTTTTTATCTCTCCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1745475..1747497+

>mRNA_Ecto-sp6_S_contig9.18192.1 ID=mRNA_Ecto-sp6_S_contig9.18192.1|Name=mRNA_Ecto-sp6_S_contig9.18192.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1745475..1747497+ (Ectocarpus species6 EcLAC_371)
ATGGCGGTGTCAGGAAGGACGGGCGTGGCCGCCTGTAAGCTCTTGATGCG
AGCTCGTGTGCAGAGACAAGCCTGTGCTGCTAGCAACCGAGCACGCCCCT
TGCAGCCACAGAGGCCATCTTTTCGTCAAGAGGACGTGCTTTACATGGAC
AACCACGTGCTTCTCGTAAACAAGCCGGCGGGGCTTCTGTCTCAGAGCGA
TCGCACCGGGGACGTGGACGTGGCCGCGCTTGCTCGGGAGTACGTTAGGG
TGGCCGCGAACAAGACTGGGGAGGCGTTCGTTGCCTTGGTGCATCGCCTC
GATCGACCAGTCTCAGGGGTGATGTGCGTGGCTCGCACGAGCAAGGCCGC
CGCTCGCCTCTCGGCCAGCTTTCGAGCCCGGGACGACGTCGAAAAGATCT
ACCACGCCGTGGTAGCCGGCAGCCTCGCCGGCCGCGGCATCCGCCAAGAT
TTGCTGGTGTCTCCGGACGCGAGCGGGGCCGTCGCGAGGCGCGGCAGGGG
GCCGAGGACAGGGTTGTCATCAGTCCCAGCCAGAGGCAGTGCGGGTGGTC
GCCTGCTGGCCGCCGGGCCAACGTCATCGCCGGACGGAAAGCTCGCTCAG
CTCGAGTGGGAAGCGATCAATGTGTCCCCCTCGTCCGCCGTTCGGCTCCG
TTGCCCTCGAACCGGGAACCCGCGAACGCTAGTCCGCGTGCGGCTCATCA
CGGGGCGGAAGCACCAGATCAGGGTGCAGCTTGCCGAGATGGGCCACCCC
GTTGTCGGGGACACGCGGTACGGTCGCTCTAGGGGGGGGGATGAAACCGA
CGAATCGGCGGTGCCCCCTCCCCGGCGGGCGGGCAGAATGGAGCCGCTTG
AGGACCGGAGTATTTTGCTGCACGCGAGCGAGTTGATTGTGCCGCACCCG
ACACGTGTAGGGGCCACGGTTCGAGCCGTGGCGGCGCCGCCCGGGATGTG
GAGCGACCTGTGCGGCCGTTCCTGTATCGACGAAGTTTTCGGCGATCAGC
CGGTAACAGGGTCGGTCGTAGAATGTGCTCGTGGTGATCATTTTGACGTG
ACAAAATAA
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