mRNA_Ecto-sp6_S_contig9.18156.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: D7G0N6_ECTSI (Ubiquitin-like protein ATG12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N6_ECTSI) HSP 1 Score: 238 bits (607), Expect = 4.670e-76 Identity = 118/123 (95.93%), Postives = 118/123 (95.93%), Query Frame = 2
Query: 320 GQQTTTAAERLSIGIMDVSVPERGETSRIPAPATPEKVKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAWV 688
G TTTAAERLSIGIMDVSVPERGETSRIP PATPEKVKVHFKPIANAPILRKSKFQVNSAWNCSELE SLRSMLQISD TPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAWV
Sbjct: 109 GAATTTAAERLSIGIMDVSVPERGETSRIPPPATPEKVKVHFKPIANAPILRKSKFQVNSAWNCSELEASLRSMLQISDTTPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAWV 231
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: A0A835ZER3_9STRA (Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER3_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.190e-27 Identity = 47/85 (55.29%), Postives = 67/85 (78.82%), Query Frame = 2
Query: 431 VKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
V++HF PI+NAPILR++KF+V +W +L+ SLR+ L++ +TPLF+YCNSAF PSPDQ L +L+ CF EL++NYS++EAW
Sbjct: 1 VRIHFMPISNAPILRQTKFRVPGSWTFQDLQASLRTQLKLPSSTPLFVYCNSAFCPSPDQILIELFLCFGTGGELVINYSLSEAW 85
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: A0A7S2CZJ6_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CZJ6_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.930e-24 Identity = 47/102 (46.08%), Postives = 72/102 (70.59%), Query Frame = 2
Query: 380 PERGETSRIPAPATPEKVKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
P++ ++ + PA +KV+VHF+ + +API+RK+KFQ+ + + + LR L++ + TPLF+YCNSAF PSPDQ L DLY+CF + EL++NY + EAW
Sbjct: 26 PKQRSSASLARPAG-DKVRVHFQAVGSAPIMRKNKFQIGAHERFATIPKFLRKQLRLDENTPLFVYCNSAFCPSPDQRLQDLYQCFQRSNELVLNYCVQEAW 126
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: A0A485KW31_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW31_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 6.010e-22 Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 2
Query: 338 AAERLSIGIMDVSVPERGETSRIPAPATPEKVKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
A + ++ +++ SV G+ S P PEKV + F + API+++SKF VN A S + LR L++ D LF+YCN+AF P+PDQ +S+L++CF +N L++NYS T AW
Sbjct: 2 ADDAVADDVLNGSV---GQVSINGRPTGPEKVTIQFMAVGGAPIMKRSKFTVNGADPLSHVYIFLRKQLRLKDEDSLFVYCNNAFAPTPDQRMSELFECFQINGALVLNYSRTHAW 114
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: A0A6G0WMC5_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMC5_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.240e-20 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 2
Query: 413 PATPEKVKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
P+ PEKV + F + API+++SKF VN S + LR L++ D LF+YCN+AF P+PDQ +S+L++CF +N L++NYS T+AW
Sbjct: 22 PSGPEKVTIQFTAVGGAPIMKRSKFTVNGNDPLSNVYIFLRKQLRLKDEDSLFVYCNNAFAPTPDQRMSELFECFQINGLLVLNYSRTQAW 112
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: F0WHJ6_9STRA (Ubiquitin-like protein ATG12 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHJ6_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 7.560e-20 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 2
Query: 428 KVKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
KV +HF + NAPIL+K+KF +++ S + LR L++ + LF+YCN AF P+PDQSL DL KCF+V+ L++NYS+T AW
Sbjct: 6 KVTLHFVAVGNAPILQKTKFTIDANDTLSVVYDFLRKQLKLKLSDALFIYCNRAFAPAPDQSLLDLQKCFSVDNVLVLNYSLTHAW 91
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: A0A4P9YW55_9FUNG (Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YW55_9FUNG) HSP 1 Score: 88.6 bits (218), Expect = 2.510e-19 Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 2
Query: 431 VKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
V V F+ NAPIL++++FQ+N++ + LR L++ PLFLY NS F P+PD+ +S+L+KCFNV+ +L++NYSIT AW
Sbjct: 1 VPVRFRAAGNAPILKENRFQINASHRFHTVAVFLRKELRLKPQDPLFLYINSVFAPAPDEVMSNLHKCFNVDGQLIINYSITPAW 85
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: A0A7S3UTE6_HETAK (Ubiquitin-like protein ATG12 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTE6_HETAK) HSP 1 Score: 88.2 bits (217), Expect = 9.990e-19 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 2
Query: 428 KVKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
KV++ FK + NAPI++K+KF + S ++ LR+ L++ LFLY N AF PSPDQ++S LY+CF + EL++NYSI AW
Sbjct: 38 KVRLQFKAVGNAPIMKKNKFLIGSHEKFQQVMVFLRNQLKLPPTESLFLYINGAFAPSPDQTISSLYECFQIQGELILNYSIVGAW 123
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: B8C4Q5_THAPS (Ubiquitin-like protein ATG12 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4Q5_THAPS) HSP 1 Score: 87.0 bits (214), Expect = 1.130e-18 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 2
Query: 428 KVKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
+VKVHF + +APIL+KSKF + LR +L++ A LFLY N+AF PSPD+ + DLY CF V EL+++YS+ EAW
Sbjct: 5 RVKVHFVAVGSAPILKKSKFLIGEEDEFGVATAFLRRLLRLDSAPSLFLYINAAFVPSPDERIGDLYDCFGVRGELVVHYSLQEAW 90
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Match: H2Y0A6_CIOIN (Ubiquitin-like protein ATG12 n=2 Tax=Ciona intestinalis TaxID=7719 RepID=H2Y0A6_CIOIN) HSP 1 Score: 85.9 bits (211), Expect = 3.810e-18 Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 2
Query: 422 PEKVKVHFKPIANAPILRKSKFQVNSAWNCSELEGSLRSMLQISDATPLFLYCNSAFEPSPDQSLSDLYKCFNVNKELLMNYSITEAW 685
P KV V +P +APIL+K K+QV+SA + G LR +L+ D+ LFLY N AF PSPD+ + LY+CF +++L+++Y+ T+AW
Sbjct: 10 PTKVDVLLRPAGDAPILKKKKWQVDSAKTVEWVVGFLRKLLKCEDSDSLFLYVNQAFAPSPDRDIGSLYECFGSDEKLVLHYAKTQAW 97 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18156.1 >prot_Ecto-sp6_S_contig9.18156.1 ID=prot_Ecto-sp6_S_contig9.18156.1|Name=mRNA_Ecto-sp6_S_contig9.18156.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=128bp MDLTDLTIQPGKIHLVREILRDGVTGSVRVLGSLKSYDAAADVAVVDYKGback to top mRNA from alignment at Ecto-sp6_S_contig9:1458951..1463014- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18156.1 ID=mRNA_Ecto-sp6_S_contig9.18156.1|Name=mRNA_Ecto-sp6_S_contig9.18156.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4064bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1458951..1463014- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1458951..1463014- >mRNA_Ecto-sp6_S_contig9.18156.1 ID=mRNA_Ecto-sp6_S_contig9.18156.1|Name=mRNA_Ecto-sp6_S_contig9.18156.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1458951..1463014- (Ectocarpus species6 EcLAC_371)back to top |