mRNA_Ecto-sp6_S_contig9.18125.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18125.1
Unique NamemRNA_Ecto-sp6_S_contig9.18125.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18125.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.780e-35
Identity = 127/137 (92.70%), Postives = 127/137 (92.70%), Query Frame = 1 
Query:  220 LAARPALIFCRVVDALQSALKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AAHEA----IKPLSKNGGVVAILAAMGLKEDFASAVVGGEREAGAMGEREKAEACRARVLNLLCEGEVFALAGSRS 612
            LAARPALIFCRVVDALQSALKS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AAHEA    IKPLSKNGGVVAIL AMGLKEDFASAVVGGEREAG M EREKAEACRARVLNLLCEGEVFALAGSRS
Sbjct: 8601 LAARPALIFCRVVDALQSALKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAHEAYERAIKPLSKNGGVVAILEAMGLKEDFASAVVGGEREAGTMDEREKAEACRARVLNLLCEGEVFALAGSRS 8737
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BLAST of mRNA_Ecto-sp6_S_contig9.18125.1 vs. uniprot
Match: D8LLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX1_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 4.420e-30
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:  397 AAHEAIKPLSKNGGVVAILAAMGLKEDFASAVVGGEREAGAMGEREKAEACRARVLNLLCEGEVFALAGSRS 612
            A   AIKPLSKNGGVVAILAAMGLKEDFASAVVGGEREAGAMGEREKAEACRARVLNLLCEGEVFALAGSRS
Sbjct:  584 AYERAIKPLSKNGGVVAILAAMGLKEDFASAVVGGEREAGAMGEREKAEACRARVLNLLCEGEVFALAGSRS 655
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE1.780e-3592.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX1_ECTSI4.420e-3095.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1164018..1164813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score129.8
Seed ortholog evalue1.5e-27
Seed eggNOG ortholog2880.D8LLX1
Model size734
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.perineurial glial growth
EggNOG OGsKOG1776@1,KOG1776@2759
EC2.3.2.27
Cds size615
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.179888-UTR-Ecto-sp6_S_contig9:1164017..11641361682350514.179888-UTR-Ecto-sp6_S_contig9:1164017..1164136Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1164018..1164136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350514.1908817-CDS-Ecto-sp6_S_contig9:1164136..11643431682350514.1908817-CDS-Ecto-sp6_S_contig9:1164136..1164343Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1164137..1164343 -
1682350514.1986017-CDS-Ecto-sp6_S_contig9:1164355..11645721682350514.1986017-CDS-Ecto-sp6_S_contig9:1164355..1164572Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1164356..1164572 -
1682350514.2062972-CDS-Ecto-sp6_S_contig9:1164622..11648131682350514.2062972-CDS-Ecto-sp6_S_contig9:1164622..1164813Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1164623..1164813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18125.1prot_Ecto-sp6_S_contig9.18125.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1164137..1164813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18125.1

>prot_Ecto-sp6_S_contig9.18125.1 ID=prot_Ecto-sp6_S_contig9.18125.1|Name=mRNA_Ecto-sp6_S_contig9.18125.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=205bp
GGCGQPCAAGGRRRRRGCLRRRQRAPSESVRRATLALHLVGLRGAVPLTR
RRQRQPNPESQWRREEEEQEESVLAARPALIFCRVVDALQSALKSGGGGN
AAAAVAAAAGGGQGTLEVFLSGGDDLLLAASSAAHEAIKPLSKNGGVVAI
LAAMGLKEDFASAVVGGEREAGAMGEREKAEACRARVLNLLCEGEVFALA
GSRS*
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mRNA from alignment at Ecto-sp6_S_contig9:1164018..1164813-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18125.1 ID=mRNA_Ecto-sp6_S_contig9.18125.1|Name=mRNA_Ecto-sp6_S_contig9.18125.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=796bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1164018..1164813- (Ectocarpus species6 EcLAC_371)
GGCGGCTGTGGCCAGCCCTGCGCAGCAGGCGGGCGGCGGCGGCGGCGGGG
GTGTCTCCGGCGGCGGCAGCGGGCGCCAAGCGAAAGCGTTCGCCGAGCAA
CGCTGGCTCTTCATCTGGTGGGGCTGCGGGGTGCGGTTCCTCTGACTCGG
CGGCGGCAGCGGCAGCCGAATCCGGAGTCGCAATGGAGGAGGTAGAGGAG
GAGGAGGAAGAGGAGGAGGAAGAGGAGGAACGCGAGCGTAGAGAGGAAGA
GGAGCAAGAAGAATCCGTCCTGGCCGCCCGACCGGCGCTCATCTTCTGCC
GCGTCGTGGACGCCCTGCAGTCGGCGCTCAAGTCCGGCGGCGGCGGCAAC
GCCGCCGCCGCGGTTGCGGCCGCCGCGGGGGGGGGTCAAGGAACGCTCGA
GGTTTTCTTGTCGGGAGGCGACGACTTGCTGCTCGCCGCGAGCTCTGCGG
CGCACGAGGCGTACGAGAAGGCGATCAAGCCCCTGAGCAAGAACGGCGGC
GTGGTGGCGATCCTGGCGGCGATGGGGCTGAAGGAGGACTTCGCGTCGGC
GGTGGTCGGCGGGGAGAGGGAGGCGGGGGCGATGGGCGAGAGGGAGAAGG
CGGAAGCGTGTCGAGCGCGGGTGCTGAACCTGCTCTGCGAGGGAGAGGTG
TTCGCGCTGGCCGGGTCTCGCTCCTAGCAATTGGGCGTTTTACGCATCAG
GCGTAGCTTCTAGGCAGTGGTTGCCAGCGCGCTCCGGCTAGTTGGCGACG
TCGGAGACGATGGCGGGGTTCGGTGTTCTTGCGGGAAAGAATCCGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1164018..1164813-

>mRNA_Ecto-sp6_S_contig9.18125.1 ID=mRNA_Ecto-sp6_S_contig9.18125.1|Name=mRNA_Ecto-sp6_S_contig9.18125.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1164018..1164813- (Ectocarpus species6 EcLAC_371)
GGCGGCTGTGGCCAGCCCTGCGCAGCAGGCGGGCGGCGGCGGCGGCGGGG
GTGTCTCCGGCGGCGGCAGCGGGCGCCAAGCGAAAGCGTTCGCCGAGCAA
CGCTGGCTCTTCATCTGGTGGGGCTGCGGGGTGCGGTTCCTCTGACTCGG
CGGCGGCAGCGGCAGCCGAATCCGGAGTCGCAATGGAGGAGAGAGGAAGA
GGAGCAAGAAGAATCCGTCCTGGCCGCCCGACCGGCGCTCATCTTCTGCC
GCGTCGTGGACGCCCTGCAGTCGGCGCTCAAGTCCGGCGGCGGCGGCAAC
GCCGCCGCCGCGGTTGCGGCCGCCGCGGGGGGGGGTCAAGGAACGCTCGA
GGTTTTCTTGTCGGGAGGCGACGACTTGCTGCTCGCCGCGAGCTCTGCGG
CGCACGAGGCGATCAAGCCCCTGAGCAAGAACGGCGGCGTGGTGGCGATC
CTGGCGGCGATGGGGCTGAAGGAGGACTTCGCGTCGGCGGTGGTCGGCGG
GGAGAGGGAGGCGGGGGCGATGGGCGAGAGGGAGAAGGCGGAAGCGTGTC
GAGCGCGGGTGCTGAACCTGCTCTGCGAGGGAGAGGTGTTCGCGCTGGCC
GGGTCTCGCTCCTAG
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