mRNA_Ecto-sp6_S_contig9.18124.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18124.1
Unique NamemRNA_Ecto-sp6_S_contig9.18124.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18124.1 vs. uniprot
Match: A0A6H5JB41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB41_9PHAE)

HSP 1 Score: 457 bits (1177), Expect = 4.680e-153
Identity = 237/267 (88.76%), Postives = 241/267 (90.26%), Query Frame = 2 
Query:   89 MRYVCGIVPLVMIASGEAFVMPSALRLSAAVAPSARLLYSGQQGRRVVTMAAEGLPPGDHNNNDPLDAQSSIPDRVGSAAIRRRIDSIKRSRGAGKRTPRQDESIRWVASTESGHRARSTLLPRAVWVLLFNQGSGPFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMTDLQRFCLDHSFGIWMIPANVVPEAPRKTKKDLGFDPLNLASSPHGGRGAREEEGSVLTPDDIRKWRAKFERLYTQE 889
            MR VCGI  LVMI   EAFV PSA RLSAAVAPS RLLYSGQQGRRVVTMAAEGLPPGDHN  DPLDAQSSIPD VGSAAIRR+IDSIKRSRGAGKRTPRQ ESIRWVASTES HRAR TLLPRAVWVLLF+QGSG F SSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIP PTRVSMTDLQRFCLDHSFGI MIPA+VVPEAPRKTKKDLGFDPLNL SSPHG R A E+ G VLTPDDIRKWRAKFERLY QE
Sbjct:    1 MRCVCGIALLVMITRAEAFVTPSAFRLSAAVAPSTRLLYSGQQGRRVVTMAAEGLPPGDHNI-DPLDAQSSIPDSVGSAAIRRQIDSIKRSRGAGKRTPRQGESIRWVASTESEHRARPTLLPRAVWVLLFSQGSGSFGSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPTPTRVSMTDLQRFCLDHSFGIRMIPADVVPEAPRKTKKDLGFDPLNLTSSPHGRRDAGEDAGPVLTPDDIRKWRAKFERLYAQE 266
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BLAST of mRNA_Ecto-sp6_S_contig9.18124.1 vs. uniprot
Match: D8LLX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX3_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 7.490e-86
Identity = 139/145 (95.86%), Postives = 142/145 (97.93%), Query Frame = 2 
Query:  236 MAAEGLPPGDHNNNDPLDAQSSIPDRVGSAAIRRRIDSIKRSRGAGKRTPRQDESIRWVASTESGHRARSTLLPRAVWVLLFNQGSGPFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMTDLQ 670
            MAAEGLPPGDH+NNDPLDAQSSIPDRVGSAAIRRRIDSIKRSRGAGKRTPRQDESIRWVASTESGHRARSTLLPRAVWVL+FNQGSG FSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMT  +
Sbjct:    1 MAAEGLPPGDHSNNDPLDAQSSIPDRVGSAAIRRRIDSIKRSRGAGKRTPRQDESIRWVASTESGHRARSTLLPRAVWVLIFNQGSGSFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMTSFE 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB41_9PHAE4.680e-15388.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX3_ECTSI7.490e-8695.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1158270..1162788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score61.2
Seed ortholog evalue8.3e-07
Seed eggNOG ortholog251221.35212229
Model size2527
Hectar predicted targeting categorychloroplast
Exons5
EggNOG free text desc.Alternative locus ID
EggNOG OGs1G70P@1117,COG0457@1,COG0457@2
Ec32 ortholog descriptionProtein of unknown function DUF3110
Ec32 orthologEc-14_002010.1
Cds size804
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18124.1prot_Ecto-sp6_S_contig9.18124.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1158358..1161153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350528.5009995-UTR-Ecto-sp6_S_contig9:1158269..11583571682350528.5009995-UTR-Ecto-sp6_S_contig9:1158269..1158357Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1158270..1158357 +
1682350528.5576181-UTR-Ecto-sp6_S_contig9:1161153..11627881682350528.5576181-UTR-Ecto-sp6_S_contig9:1161153..1162788Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 1161154..1162788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350528.512428-CDS-Ecto-sp6_S_contig9:1158357..11584091682350528.512428-CDS-Ecto-sp6_S_contig9:1158357..1158409Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1158358..1158409 +
1682350528.5234127-CDS-Ecto-sp6_S_contig9:1159209..11593291682350528.5234127-CDS-Ecto-sp6_S_contig9:1159209..1159329Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1159210..1159329 +
1682350528.5316758-CDS-Ecto-sp6_S_contig9:1159751..11599301682350528.5316758-CDS-Ecto-sp6_S_contig9:1159751..1159930Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1159752..1159930 +
1682350528.5395086-CDS-Ecto-sp6_S_contig9:1160192..11604141682350528.5395086-CDS-Ecto-sp6_S_contig9:1160192..1160414Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1160193..1160414 +
1682350528.5475943-CDS-Ecto-sp6_S_contig9:1160922..11611531682350528.5475943-CDS-Ecto-sp6_S_contig9:1160922..1161153Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1160923..1161153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18124.1

>prot_Ecto-sp6_S_contig9.18124.1 ID=prot_Ecto-sp6_S_contig9.18124.1|Name=mRNA_Ecto-sp6_S_contig9.18124.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=268bp
MRYVCGIVPLVMIASGEAFVMPSALRLSAAVAPSARLLYSGQQGRRVVTM
AAEGLPPGDHNNNDPLDAQSSIPDRVGSAAIRRRIDSIKRSRGAGKRTPR
QDESIRWVASTESGHRARSTLLPRAVWVLLFNQGSGPFSSSSEPQRGLYC
LWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMTDLQRFCLDH
SFGIWMIPANVVPEAPRKTKKDLGFDPLNLASSPHGGRGAREEEGSVLTP
DDIRKWRAKFERLYTQE*
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mRNA from alignment at Ecto-sp6_S_contig9:1158270..1162788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18124.1 ID=mRNA_Ecto-sp6_S_contig9.18124.1|Name=mRNA_Ecto-sp6_S_contig9.18124.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4519bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1158270..1162788+ (Ectocarpus species6 EcLAC_371)
CACACACATACCTCCTGTGATATCGCGGGCCAGGTTTTGGGCGTGACATA
CCCACACGGCACTCACTTCCGTGCTTCTTGTGTACAAAATGCGTTACGTA
TGCGGCATCGTCCCCCTCGTCATGATCGCGAGCGGCGAAGGTAAGGAATA
CACACCGTTGGGATACATTGCAACCATACCCGCTCTTTTTCTAAAACGGC
GGCTCCCTACCCAGACTAGCTCCGGAGGGGTACCCGCACCGCCGGAAAGC
GGAAAATAATCAAGGCCAAGTCTTGTCAGCAGGTCTGTCGTGTGCTCCCT
CTGTACATGTACGTAGTCGCAGGAGCAACCCAGTCCGTCTTTGCGATCGA
TCATGAATCGCCTCTCTGTTGGCAATAAAGGGATTCTCATGTTGAAGTGG
TGGCGTGGCGTTGTGGCACCCATCGCATGTGAATATCTAAAAGATCCTAC
GGCCCTCGAGTGAAGCAACGAGATGGCTGCCCCCGTGTGTCTGGATTGCC
CTAGACCAATGGATGGTGTTCTGCTGTATCGTTGTCGTGCTTAACCTGGG
TGTGAGTGCGTCTCGCTCCCTCCGGTCTGGATGGATTGACTGGTTCTTTC
CACGGAACAACAATCTTTACGCCCTCGGTAAACTTGTCCTCTCTCATCCC
CTACCACCCCCCCCAGATACTGAAACTCTAGAGGTTATATACCAGGAAGG
TCCCACAGGGAGATTCCCCTAGTCGTTGGCACTCCTATTCTTACGAATGA
ATGAATGCATTTATTTGCCTACAGCAGCAATCTGCAAGTAAGTGTTGTTT
GTTAGGTCACACACGCGTTCCGGTATCTATCCCGAGACCGCGCGCGGATA
GGAAACCCGCGAAGGTGTGCCTACATGTGCTACCGCCCACCACCGCCGCC
TCTGCCGGCCGAAACGTGCGCGTGCTGCATCTCACATCAGCTTTCGTCAT
GCCCTCGGCGTTGAGACTGTCTGCCGCCGTCGCCCCAAGTGCAAGACTGC
TGTACTCAGGGCAACAGGGCCGGCGAGTTGTCACCATGGCGGCAGAGGGG
CTTCCCCCAGGTTTGTCCGCTACTGGTATTTTTTATATATTAGATGGGAC
AAACACCACCTCGCTCTGTTCTCATTATTGCCGAGGATCCGATGCAGCGG
TTCCGCCCGTTGGCTCTTCCTGCTACCAAGCCGTTGTGCTCTGCTTGGAA
AAGCTCCTGCTGTGTTCGTCCGTAGACGCAACTGCACGTTGTAGCTGGTG
ATGGTGGGGGAAGATTGATGTGTGCATATACCTGACGTAAATCGTCTCCA
AAAACTGATGTGTGGGTACACACCCAGTTGCACCCGATCGATGCGCAAGG
AATTCTGCACACACGCATGACAAGGAAAAATAGGGGAGTATTATACAGCA
GTAGTGCGCAAAACACTCGGCGTGTGCACTTTTCAACATGCACCCCCTGG
TCCATACCTCCTCATCACCGCCATCACCTCAGGCGACCACAACAACAACG
ATCCCCTCGACGCCCAGTCCAGCATCCCAGACAGAGTGGGTTCTGCCGCT
ATCAGACGGCGAATCGACTCTATCAAGAGAAGCAGAGGGGCGGGCAAGAG
AACACCCAGACAAGACGAAAGCATCCGCTGGGTGGCGTCCACAGAATCGG
GACACCGCGCGGTAAGTTCGTGTGTACTTTGGTAGTCGATGGTAATCTAG
GAATTACCAGCACCGCGTACTGAGACGCACCAGCGCTCACCCGCGCGTGC
GCACAGCAACAACTAACACAAGCCGTCCTTGCGGACATGATAACGTACTT
TGGATCCGCAGGAGTCAACACAACAAACGATGATACGATCATGTATGCAC
AAAAAAAATACAACCGACCATCCCCCCGCCCTTTGAACCACCTGTGCCTC
CCCCGCCCCTCCCGAATCATCAGCGTTCCACCCTACTACCGCGCGCAGTT
TGGGTCCTTCTTTTCAACCAAGGCTCTGGGCCCTTCAGCAGCAGCAGCGA
GCCACAGCGAGGACTGTATTGCTTGTGGTCCAAGGGCACCAACTCTGCCT
TGGCCTTCGAAGAGCGGGAAGGGGCGCTGCGCTACGCCTTCAAGCTGAAG
GAGAAGGGACTGGGAATCCCGAGACCGACGCGTGTCTCAATGACGGTGGG
TAGGCGTACCATGCGCGGCACAAAATGCATGTGTGTTTGTTGGCGTGGGT
TACGGATGGATGGGCTTGTTCGCTTGTCGGCTGGCTTTTTTGTGTTTGAG
TCGTGCGAACACGACAATGTGGGGGCTGGAAACCGAGTCAAGTCGAATGA
AATCGTTCGCAATTGGCTGTAACGTGTGTATTAATAGTACAAGGGAGGAA
CATGGTAAGACCAGGAGGGGTGCAGTGGCTAAGTTTTTGTTTTGGTTCAT
CACACAAGTCAAACACCCCTTCTCTTCACCTTCACAACAGCAACGACAGA
AAACGTGTTGAAAGGGCACTGAACTGAAGCATCCGTCACTAATGGCTTGA
CAGCCAACAACAACCAACCCTGTTTATTTTCTCTCGCAGCTCAGTTTTTC
TTGGCGATTCTTTTGGTCCTCTCTCTCTCCCTGCGAATGACATAATAACC
TTTGGTACCCATCCCTGCCTCACTTACTATTGTCTTGATCCACACCTTGG
CAGGACCTCCAACGCTTCTGCCTGGACCACAGCTTCGGCATCTGGATGAT
CCCCGCCAACGTCGTGCCCGAAGCTCCCCGAAAGACTAAGAAGGATCTAG
GCTTCGACCCTTTGAACTTGGCGTCATCACCTCACGGAGGACGCGGCGCA
AGGGAGGAGGAGGGATCCGTGCTGACGCCGGATGACATCCGTAAGTGGCG
GGCTAAATTCGAGCGGCTGTACACTCAGGAATAAGCGAAGGTTAAACCGA
CTGACTGCCAGACCAGAGTGGATCGAGATACCGGCTGCGCTACTGTCAGG
AAGAAAATGAGCCTGTCGTTTTTTTGGGAAATCACTGACAGCGTAGAGAG
CGAGCAACCGGCGGCTGTATGCAGCCTCCTTTGCTGCTGCTGTTGTGTGT
GTTGTAACATATAGACGTTTGAGAGACCCGCTGCTGCCGGACTGTTGTGC
GGAAAACTCAGCGCAAAGGCCGCGAATCAAGCCGTCTGTCGCCGCTGGTT
GGCTAACGACACGCAAGAGCATCGGCAGGCGTTAATAATGTAGTATCGTG
TCATGTGCGGGGGTATAGGAGGCGGTGTCTTTCGACCAACGCGCGGCGAT
AGAACAACGTAGTACGTACGTACGCTGCCGTACCACAAGGGAGGATGGAT
GTAATGAATGATGATGTAGTAAGCTGTGGGGCAGAGAGAGAGCAATTTGA
CGGCGTCTGTCTCTGTAGCAGCACGAGGGGAAAGGGACTCGGGTTGTTGG
TGGAGGAGGTTGGGCAAGGCAAGGGTGTTGTGCATCGATCGTCAGATGGA
TTACAATTAATATGTTGTTTATCGTTGTGTGAATACGTTCATGTCATATG
TACGCTCTGTTGCATGTACTGTAGACTGTTCAAACGAAGTACATATTTAT
TCCCGAGGGAGTTTTAAATATTGTTGTGATGTATGCATAGACTAGACTGG
TTTTGTTCTTTTCTCGCGGTGTTGAAGTTACGGGTGATGGTTTCGTGCAG
AAACCAACCCTCGCTGGTTGAGAACCGGTAACATACTGCTGTAGTGCGTG
CATTGTTTTGCTTCTTCTTTCGGTCAGCACCGCGAGACGACCTGCATTTG
CGGGGTTTGGCGGAAGGATGGGTGGAAGGCCGAAAGAAGAGTGTAAACGT
ACATTTTTTTCGTGAGACTTGTTTTCGTTCACGCCTGTTTCTTGCCAACC
GCGCGTGTCTTCGCTGTTGGTTGTTGTAGCAGCAACGTTCTTGCGGTTTT
AGTTTAACTTTGGATATGACAGAATTTTCTCGGAATCTTCATGTCTTGTC
GATCCAGCAGCAGCTGGTGGTGGAATGCATAGTGGTGCTGGTCGGAAGTT
TTAAAAAAAAATGTTTGGCCCACTCGGAGCAAAAAACGGCAGTCAGTGTG
GGTGCGAAAGACAAAAACGAGTAGAAATCTTCAACGCAGTGCAAGCCAAT
TGCTGTTCGTGTTTTCTGAACAGCCGCGGCGACGCCGCGGCGGCGATGGC
AGTGGCCGCGGTGGCGGTAGCAAAACCATCGAACTGTAGATACGCTTGGA
TGGCCCGTGCCTCTTCCTTCCCCCTCATAATTCCTTTCGTCCCTCTACCA
TAGCGGTGAGTGCGACATGCCATGCCTGCTCCCCAACGCCCGTCGGCAGC
CAGCCGTGGATCGTATCTTCGCGATTTGTTCGCGAAGCCACAAGAATACC
GAGGAACCGTCACCCAGAGGCTCCAGGTTAAGGCGGAACTTGCGGCCGAA
CCATCTGAGCGAAAAAAAAACTAAGACGCCGTGGTGGGCGTTTTGTTCTT
GTTGTTGAGCGTACCACCCCCAGTCCGGGGAAGCCTCAATCTAACCTTGT
GCTTGTATTTTTGCGCGGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1158270..1162788+

>mRNA_Ecto-sp6_S_contig9.18124.1 ID=mRNA_Ecto-sp6_S_contig9.18124.1|Name=mRNA_Ecto-sp6_S_contig9.18124.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1158270..1162788+ (Ectocarpus species6 EcLAC_371)
ATGCGTTACGTATGCGGCATCGTCCCCCTCGTCATGATCGCGAGCGGCGA
AGCTTTCGTCATGCCCTCGGCGTTGAGACTGTCTGCCGCCGTCGCCCCAA
GTGCAAGACTGCTGTACTCAGGGCAACAGGGCCGGCGAGTTGTCACCATG
GCGGCAGAGGGGCTTCCCCCAGGCGACCACAACAACAACGATCCCCTCGA
CGCCCAGTCCAGCATCCCAGACAGAGTGGGTTCTGCCGCTATCAGACGGC
GAATCGACTCTATCAAGAGAAGCAGAGGGGCGGGCAAGAGAACACCCAGA
CAAGACGAAAGCATCCGCTGGGTGGCGTCCACAGAATCGGGACACCGCGC
GCGTTCCACCCTACTACCGCGCGCAGTTTGGGTCCTTCTTTTCAACCAAG
GCTCTGGGCCCTTCAGCAGCAGCAGCGAGCCACAGCGAGGACTGTATTGC
TTGTGGTCCAAGGGCACCAACTCTGCCTTGGCCTTCGAAGAGCGGGAAGG
GGCGCTGCGCTACGCCTTCAAGCTGAAGGAGAAGGGACTGGGAATCCCGA
GACCGACGCGTGTCTCAATGACGGACCTCCAACGCTTCTGCCTGGACCAC
AGCTTCGGCATCTGGATGATCCCCGCCAACGTCGTGCCCGAAGCTCCCCG
AAAGACTAAGAAGGATCTAGGCTTCGACCCTTTGAACTTGGCGTCATCAC
CTCACGGAGGACGCGGCGCAAGGGAGGAGGAGGGATCCGTGCTGACGCCG
GATGACATCCGTAAGTGGCGGGCTAAATTCGAGCGGCTGTACACTCAGGA
ATAA
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