mRNA_Ecto-sp6_S_contig9.18106.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18106.1
Unique NamemRNA_Ecto-sp6_S_contig9.18106.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: D8LLY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY8_ECTSI)

HSP 1 Score: 451 bits (1160), Expect = 2.730e-155
Identity = 228/233 (97.85%), Postives = 230/233 (98.71%), Query Frame = 1
Query:    1 MATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQK 699
            MATDSVELLALQRIDETCMQLQQQG+YLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGA VGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEV  +
Sbjct:    1 MATDSVELLALQRIDETCMQLQQQGDYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGATVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVTAR 233          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A7S2CPG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPG4_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 2.150e-131
Identity = 204/278 (73.38%), Postives = 236/278 (84.89%), Query Frame = 1
Query:   10 DSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSKVREDLIRRGNRRPRGGACG 843
            ++ ELLALQRIDETC QLQ QGNYL+ALECMERGLVLRQHFFG+DS+EVW ACK+VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD+AGRAVT+NNLACYYRR+GKLH+ALQYL KALKIE K+  +V++PADT+LNTCAVLSQ+GRHQ ALEHAQ ALILLQEEL      + D     G++ P+ADRIAVLAIAYHN+GVE EFLKKF+ SLQSYRKGVEV++++LG +HA+TVTLRNS +AARRAI  RD + R   +    R+ RGG  G
Sbjct:    7 NNAELLALQRIDETCKQLQTQGNYLEALECMERGLVLRQHFFGADSDEVWRACKVVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDNAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIENKL-DQVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEELSRVLGPMAD-----GNEAPKADRIAVLAIAYHNVGVEYEFLKKFDQSLQSYRKGVEVSERFLGPDHAITVTLRNSCIAARRAIMVRDPQARLQNLESKGRKGRGGGAG 278          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A7S3YLC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLC4_HETAK)

HSP 1 Score: 391 bits (1004), Expect = 2.730e-130
Identity = 200/257 (77.82%), Postives = 221/257 (85.99%), Query Frame = 1
Query:   10 DSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARD 780
            D+ ELLALQRIDETCMQLQQQGNYL+ALECMERGLVLRQHFFG++SEEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVTYNNLACYYRR+GKLHSALQYL KALKIE+KM   VE+PADTHLNTCAVLSQ+GRH  ALEHAQS++ILLQEELF G            D  PR DR+AVL IAYHN+GVEQEFLKK+E S+ SYRKGVEV +++LG  HA+TVTLRNS +AARRA+ ARD
Sbjct:   63 DNAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGAESEEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDQKGKAVTYNNLACYYRRQGKLHSALQYLQKALKIESKMKD-VENPADTHLNTCAVLSQLGRHTSALEHAQSSMILLQEELFQG------------DGDPRPDRVAVLGIAYHNIGVEQEFLKKYEQSIASYRKGVEVVERFLGPRHAITVTLRNSLVAARRAVGARD 306          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A7S2RTK0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTK0_9STRA)

HSP 1 Score: 388 bits (996), Expect = 2.910e-129
Identity = 200/260 (76.92%), Postives = 227/260 (87.31%), Query Frame = 1
Query:   13 SVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSKVR 792
            + ELLALQRIDETC +LQQQGNYL+ALECMERGLVLRQHFFG++S+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLHSALQYL  ALKIEAK+ +RV++PADT+LNTCAVLSQ+GRHQ ALEHAQ ALILLQEEL      + D     G + P+ADRIAVLAI+YHN+GVE EFLKKF+ SLQSYRKGVEVA+++LG  HA+T+TLRNS +AA+RAI ARD  VR
Sbjct:   16 NAELLALQRIDETCRKLQQQGNYLEALECMERGLVLRQHFFGAESDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHSALQYLQNALKIEAKL-ARVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEELSRVVGPMAD-----GKEAPKADRIAVLAISYHNVGVEYEFLKKFDQSLQSYRKGVEVAERFLGSEHAITITLRNSCIAAKRAIMARDPHVR 269          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A836CET2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET2_9STRA)

HSP 1 Score: 383 bits (983), Expect = 1.290e-127
Identity = 197/240 (82.08%), Postives = 212/240 (88.33%), Query Frame = 1
Query:    4 ATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGG--AAVGDAGGEG------GDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQK 699
            A DS ELLALQRIDETCMQLQQQGNYL+ALECMERGLVLRQHFFGSDS+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVT NNLACYYRR+GKLH+ALQYL +ALKIEA++GSRV+ PADTHLNTCAVLSQ+GRHQGAL+HAQSALILLQEELFGGG  A      G+G          PRADR+AVLAIAYHNMGVEQEFLK+F+HSLQSYRKGVEVAQK
Sbjct:    3 AADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 242          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A7S4A6K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K0_9STRA)

HSP 1 Score: 377 bits (968), Expect = 2.930e-125
Identity = 199/276 (72.10%), Postives = 226/276 (81.88%), Query Frame = 1
Query:   10 DSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSKVR-EDLIRRGNRRPRGG 834
            D+ ELLALQRIDETC   QQ G YL+ALECMERGLVLRQHFFG+ S+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLH+ALQYL KALKIE ++ S V++PADT+LN CAVLSQ+GRHQ ALEHAQ ALILLQEEL           G     PP+ADR+AVLAIAYHN+GVEQEFLKK   SLQSYRKGVEVA++YLGG+HA+T TLRNS +AARR + ARD + R + + ++  RR  GG
Sbjct:   15 DNAELLALQRIDETCTNFQQNGQYLEALECMERGLVLRQHFFGAGSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIEGRLES-VDNPADTYLNACAVLSQLGRHQSALEHAQQALILLQEELS-------SVLGSDNAGPPKADRVAVLAIAYHNVGVEQEFLKKHNQSLQSYRKGVEVAERYLGGDHAITSTLRNSCVAARRTMLARDPQARLQGMGKKAARRAPGG 282          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A7S1XJL3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJL3_9STRA)

HSP 1 Score: 378 bits (970), Expect = 6.340e-123
Identity = 197/269 (73.23%), Postives = 231/269 (85.87%), Query Frame = 1
Query:    4 ATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGG---GAAVGDAGGEGGDQPPRA--DRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSKVRE 795
            + ++ ELLALQRIDETC+QLQQ GNYL+ALECMERGLVLRQHFFGSDS EVWSAC+ VGEMCNLLAMTYLQQ+D+ MVLELLKKAEILTERDD GRAVT+NN ACYYRR+GKLH+ALQ+L KAL+IE+++   V + ADT+LNTCAVLSQ+GRHQ ALEHAQ+ALILLQEELF G   GA +G  G E G  PP    DRIAVLAIAYHN+GVEQEFLKKFE SL SYRKG++VA+++LGG+HA+ +TLRNS  AARRA +++D K R+
Sbjct:  112 SNETAELLALQRIDETCVQLQQSGNYLEALECMERGLVLRQHFFGSDSNEVWSACRTVGEMCNLLAMTYLQQQDYAMVLELLKKAEILTERDDKGRAVTFNNFACYYRRQGKLHAALQFLQKALRIESRLVD-VPNAADTYLNTCAVLSQLGRHQSALEHAQNALILLQEELFHGIEGGAGMG--GEEAGLAPPNPPKDRIAVLAIAYHNIGVEQEFLKKFEMSLTSYRKGIQVAERFLGGDHAIALTLRNSLTAARRAFASKDPKGRK 377          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A7S3HH21_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH21_9STRA)

HSP 1 Score: 362 bits (928), Expect = 5.970e-119
Identity = 183/254 (72.05%), Postives = 217/254 (85.43%), Query Frame = 1
Query:   13 SVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISA 774
            + E+LALQR+DET  QLQ+QGNYL+ALECMERGLVLRQHFFG+DS EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTE+D+AGRA T+NNLACYYRR+GKLH+ALQYL KALKIE+ + + V++PADTH+N CAVLSQ+GRHQ AL+HAQ+A+ILLQEEL      VG A       PP+ADRIAVLAIAYHN+GVEQEFLK++E S+ SY+KGVEVA++YLG  HA+ VTL NS +AA++  +A
Sbjct:    4 NAEVLALQRLDETSAQLQKQGNYLEALECMERGLVLRQHFFGADSPEVWKACKTVGEMCNLLAMTYLQQEDFNMVLELLKKAEILTEKDEAGRAATFNNLACYYRRQGKLHAALQYLQKALKIESGL-TNVQNPADTHINACAVLSQLGRHQTALDHAQNAIILLQEELLSPPGVVGAA-------PPQADRIAVLAIAYHNIGVEQEFLKRYEQSVLSYKKGVEVAERYLGAKHAICVTLNNSLVAAKKQAAA 249          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A024U4G6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4G6_9STRA)

HSP 1 Score: 328 bits (840), Expect = 1.230e-105
Identity = 175/263 (66.54%), Postives = 200/263 (76.05%), Query Frame = 1
Query:    4 ATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSKVR 792
            A +  EL ALQR+D  C +LQQ+G Y +ALECME+GLVLRQHFFGSDS EV  ACK VG+MCNLLAMTYLQQE+F +VLELLKKAEILTER  AGRAVT NN ACYYRR+G LH AL +L +AL IEAK+   V + ADTHLN CAVLSQ+GRHQGALE AQ+ALILL EELF         G    D   + DRIAVL IAYHN+GVEQEFLKK E S+ SYRKG EVA KYLG +H + +TLRNS + A RA+ AR S+ R
Sbjct:   27 AVEDQELYALQRLDTKCTELQQEGKYTEALECMEKGLVLRQHFFGSDSPEVRDACKTVGDMCNLLAMTYLQQENFPIVLELLKKAEILTERHPAGRAVTLNNFACYYRRQGNLHKALTHLTEALAIEAKL-EHVPNRADTHLNMCAVLSQLGRHQGALEQAQAALILLHEELFSAPTPGNQHGSPVADASVKLDRIAVLGIAYHNVGVEQEFLKKLELSIHSYRKGAEVAAKYLGESHGMVITLRNSLVTATRALEARASRGR 288          
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Match: A0A482SDU3_9ARCH (Tetratricopeptide repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDU3_9ARCH)

HSP 1 Score: 320 bits (821), Expect = 2.930e-103
Identity = 166/219 (75.80%), Postives = 185/219 (84.47%), Query Frame = 1
Query:  100 MERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAA 756
            MERGLVLRQH FG+DSEEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTE+D AGRA TYNNLACYYRR+GKLHSALQYL KALKIE+K+ + V++PADTH+N CAVLSQ+GRHQ ALEHAQSALILLQEEL     +VG A        P+ADRIAVLAIAYHN+GVEQEFLK+FE S+ SY+KG EVA++YLG  HA+T TL NS  AA
Sbjct:    1 MERGLVLRQHMFGADSEEVWKACKTVGEMCNLLAMTYLQQEDFNMVLELLKKAEILTEKDPAGRAATYNNLACYYRRQGKLHSALQYLQKALKIESKLPN-VQNPADTHINACAVLSQLGRHQTALEHAQSALILLQEELLSPPGSVGAAA-------PQADRIAVLAIAYHNIGVEQEFLKRFEQSILSYKKGAEVAERYLGTKHAITRTLNNSLAAA 211          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY8_ECTSI2.730e-15597.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CPG4_9STRA2.150e-13173.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3YLC4_HETAK2.730e-13077.82Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2RTK0_9STRA2.910e-12976.92Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A836CET2_9STRA1.290e-12782.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4A6K0_9STRA2.930e-12572.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XJL3_9STRA6.340e-12373.23Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HH21_9STRA5.970e-11972.05Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A024U4G6_9STRA1.230e-10566.54Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A482SDU3_9ARCH2.930e-10375.80Tetratricopeptide repeat protein n=1 Tax=archaeon ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:1017735..1021522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score452.6
Seed ortholog evalue2.5e-124
Seed eggNOG ortholog2880.D8LLY8
Model size1575
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs28ZWJ@1,2R6RA@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-14_002170.1
Cds size1575
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350526.8232112-CDS-Ecto-sp6_S_contig9:1017734..10178061682350526.8232112-CDS-Ecto-sp6_S_contig9:1017734..1017806Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1017735..1017806 +
1682350526.8336778-CDS-Ecto-sp6_S_contig9:1018162..10184831682350526.8336778-CDS-Ecto-sp6_S_contig9:1018162..1018483Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1018163..1018483 +
1682350526.8424432-CDS-Ecto-sp6_S_contig9:1019516..10198101682350526.8424432-CDS-Ecto-sp6_S_contig9:1019516..1019810Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1019517..1019810 +
1682350526.8510904-CDS-Ecto-sp6_S_contig9:1020136..10203751682350526.8510904-CDS-Ecto-sp6_S_contig9:1020136..1020375Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1020137..1020375 +
1682350526.8593042-CDS-Ecto-sp6_S_contig9:1020873..10215221682350526.8593042-CDS-Ecto-sp6_S_contig9:1020873..1021522Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 1020874..1021522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18106.1prot_Ecto-sp6_S_contig9.18106.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 1017735..1021522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18106.1

>prot_Ecto-sp6_S_contig9.18106.1 ID=prot_Ecto-sp6_S_contig9.18106.1|Name=mRNA_Ecto-sp6_S_contig9.18106.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=525bp
MATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSE
EVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVT
YNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLS
QIGRHQGALEHAQSALILLQEELFGGGAAVGDAGGEGGDQPPRADRIAVL
AIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTM
AARRAISARDSKVREDLIRRGNRRPRGGACGGGERAGRPRQPNSNVGTGV
LSHALSAASIATPQQTDHMQQQLQQQQQHEHQDERLHKRPPEGKNEASIE
LGEEEKAEMERGADEKADNEIERGDDDELGEKEKAEMERGADEKADNEIE
RGDDDEAETDRVARGLMQSTALEPAPPPAIEKPATTTEAKDVGSEAEAEA
GADVGAEAEVGEEVEAEVEAEAKAAEEDMAKDPRRELRKMSGPLDGDSVL
GGMISPRPADHTDEHQGEADVGEG*
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mRNA from alignment at Ecto-sp6_S_contig9:1017735..1021522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18106.1 ID=mRNA_Ecto-sp6_S_contig9.18106.1|Name=mRNA_Ecto-sp6_S_contig9.18106.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3788bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1017735..1021522+ (Ectocarpus species6 EcLAC_371)
ATGGCCACGGACAGCGTAGAGTTACTGGCCTTGCAGCGCATCGATGAAAC ATGCATGCAGCTTCAGCAGCAGGTTCGGAAAAGCTCACAAGCGCGTGGCT TCCGTATCCAAATACTGGAATACCGACGACGGATCCCGTCCACGGCGCTC AATCATGCTCTCCCCCCCGAAGTCTAGATTTTTATACCGCAGACCTCGAA ACAAAGCCATCCAGTCAGCCATTGGATAACCTGTAGTGACTAACACGCCC GCCGCTGAGACACTTTCCAACGGCTGTCTATCGATGTTGTGTGACTCTTG TTCACACCTCTGTTCACACCCAAAAGATCTTCCCATGTGCACTGTAGATA CGCCAGCCTTCAACACGTCATGCATATCATACATTGTATCATCATTCCTG ATGATCATGTGATTCCTCCACAACACAGGGGAACTACTTGCAAGCGCTGG AATGCATGGAGAGGGGCCTCGTGCTTCGGCAGCACTTCTTTGGGAGCGAC AGTGAGGAAGTTTGGAGCGCCTGTAAGATAGTCGGGGAGATGTGCAACCT TCTCGCCATGACCTACCTGCAGCAGGAGGACTTCGGCATGGTGCTTGAGC TGTTGAAGAAGGCGGAAATTCTTACCGAAAGGGATGATGCCGGGCGAGCG GTGACGTACAACAACCTCGCGTGTTACTACCGTCGGCGCGGGAAGCTGCA CTCCGCGTTACAATACCTCCACAAGGCTCTCAAGATCGAAGCGAAAATGG TGAGTTTGGTCCACAATCAATGTACGAGCATGTTGTTGAGTGAGAGAAAC TACTTATTCATTTGGGATTACTTGCGTCGAGTGCTTAGCTTACTCCTCGG AATGCTCCCTCGATATTGGTCTCTGTCAATTTGTCTAGTATCTAGACAGC CAACAGCGATGCCGGTGTTGGGCATACGACAATGGTAGTAGTTATTGCAT CGGATGGTAACGTAAACATGTCAGATGTTGCAGCTGGGATTCGAAGGTAA AGAAAATGCTGTGTTCTGCAACAAGTCACCCAAGCGAGATGTGTGTGCCA ACATCCTATTCTACACAACATGGTTGAGGAAGTGATCAACACAAGATTTG GTATGTTTGGAATCCAAACCCAACGGAGAATCAATGTACCCATGGTTCGA TACCCTCTGCTTGCACACACTTCCTTAGTCGGCAGGCGTTTGAAGTCATG AAACCAAGCTTCACAGAACACGGGCATTCGCATTTCCTTCAAAAGGCATG TCATCCAGAATAACTGCCTTAAAGCGTAGTGCGTGCTGCAGACTTGAGTT CGGCTCTCCTTGTTCCCGTTCAGTTTCTTTACTGCGTCCAGTTTTTTTCT GTGTTGCCTTGTTGCTTGGTTCGACATGGAACTGTCGCGTATTCATGTGA TTTACCTGCAAGACGTCAATCCAAGAAGAGAATCTACACTGGCACAAGGG GGAATAGGCGGTGATGTGTGGTGCTTTTAAGCCACTCTCCAACTTTCTAA TTACCAGCAACAAAGTCAACACGGAAGCAACAACTCATGATTGACGTTTG TGGTGGCGCTGGAGCTAGCTTTATTAGCATTCTCGATGGGGGCTTTGGTT TTTCAGTGGAAACTTGCCACATTGAAGCCCTCAAAGGACAAATCAAAGCG GTCGGCCGCACTCAGCTACCAAACTCAGCCATCGACTTGGAAAAACCTTG CCACAACTAACCCCTATATGTATCATGTACCCTAACCTTTTTTCGTGCCT GTGATTTCGACGGCGACGGCGGAACCGAGAAGGGGTCGCGGGTAGAGCAC CCGGCTGACACCCACCTCAACACATGCGCGGTGCTTTCGCAAATCGGGCG ACATCAAGGAGCGCTGGAGCACGCTCAGTCGGCGCTCATTCTCCTGCAAG AAGAGCTGTTTGGAGGCGGGGCCGCGGTTGGGGACGCTGGAGGGGAAGGC GGGGACCAGCCCCCGCGGGCGGATCGAATCGCCGTGCTGGCCATCGCCTA CCATAACATGGGCGTGGAGCAGGAGTTTCTCAAGAAGTTTGAGCACAGCC TGCAATCCTACAGAAAAGGAGTCGAGGTGACGGCACGATTGAGTCCTTTC TGAGTTCCCTCGCGGGGGTACGGCGTTTGGCATTTGTAGATCGCTCAAGA TCGTGGCTCGGTGCCCCGTTACCACTAAGCGAGGGGAGAACCCGCAAAAC AAAAAACATGGTGTGGGGCACATCCTTTCGCGCCCTCCACCCGCAAAGGT TGGGCCTCCGCAAAGATTAGGTCTCGATGATTTTTTCCATGAGCCCATAA AATCATGTGGGGTTCTTCATTCCGGACGGTAAAAAGATCTCTGTGCTTGC CCTGGGCCCGTTTTGTGCTTGCGCTCTTTTTCCCCGTTGCTGTGACACGA AGGTGGCTCAGAAGTACCTGGGTGGGAACCACGCCGTCACCGTCACGCTC CGCAACTCCACCATGGCCGCGCGGCGAGCAATAAGCGCTAGAGATAGCAA AGTGCGAGAGGATCTGATCCGTCGCGGCAATCGGAGGCCACGGGGGGGCG CTTGTGGAGGAGGGGAGCGAGCTGGCCGCCCGCGACAACCGAACTCCAAC GTAGGGACAGGCGTGCTGAGCCACGCCCTCTCCGCCGCTAGGTGGGCACG GGTGCACGTAGGCGCTGCCTGTGGGTTGTGTTCTTCTCCCTCAGCCACTG TACGTATCTGTGTTGTATAGGTGGTGTACTGTTACTCGCTTCCGGCGGCA CGGCGTCATGGGCGGTCGGGATATCCCTTCCGGCAACTTCATACCATTTT CGTACATTGTGAAATCCTTGTATGCCTTTTGGTATCACCCTTCCAGAACT TTGCACTAGAACTCCGGGGAGAGGTGGTCGATTTCTCTGTCCGGCAGTGT CTCTGTGTCTTATCCTTGTGTCTTGTTGGGCTTGCGTAAAGAAGCCATGA TGAAACGATGAGTAAATCAGTTCGGACGTTGAGAGCACGAGCGTCCTCAG GAACTCAGGGCAAGCTCCGACTGTCCCTACTACAGAAGTAGGTGCCCAAC TGTCGCTACATGTGCCACGCTCTCAGCGCAACCACCACACCTATTACCCT TTGCCTTGTTCGTGGCACATCGCACCACCGCCGCCACAGCATTGCCACTC CGCAGCAGACGGATCACATGCAGCAGCAGCTGCAGCAGCAGCAGCAGCAT GAACATCAAGACGAACGCCTACACAAACGTCCACCGGAGGGCAAGAATGA AGCAAGTATTGAGCTTGGTGAGGAGGAGAAGGCTGAAATGGAGCGTGGTG CTGACGAGAAGGCCGACAACGAAATTGAGCGTGGTGACGACGATGAGCTT GGTGAGAAGGAGAAGGCTGAAATGGAGCGTGGTGCTGACGAGAAGGCCGA CAACGAAATTGAGCGTGGTGACGACGATGAGGCCGAAACTGATCGGGTCG CAAGGGGACTCATGCAGAGTACGGCTCTCGAGCCCGCACCACCACCGGCG ATAGAAAAGCCAGCGACGACAACGGAGGCCAAGGACGTGGGTTCGGAAGC GGAAGCGGAAGCAGGGGCCGACGTGGGAGCAGAGGCGGAAGTGGGAGAAG AGGTGGAGGCAGAGGTGGAGGCAGAGGCGAAGGCGGCGGAAGAGGACATG GCGAAGGATCCCCGCAGGGAGTTGAGGAAAATGAGCGGTCCACTCGATGG CGACTCAGTCCTTGGGGGGATGATTTCGCCAAGGCCAGCAGATCACACCG ACGAGCACCAGGGCGAAGCCGACGTAGGCGAAGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:1017735..1021522+

>mRNA_Ecto-sp6_S_contig9.18106.1 ID=mRNA_Ecto-sp6_S_contig9.18106.1|Name=mRNA_Ecto-sp6_S_contig9.18106.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1575bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:1017735..1021522+ (Ectocarpus species6 EcLAC_371)
ATGGCCACGGACAGCGTAGAGTTACTGGCCTTGCAGCGCATCGATGAAAC
ATGCATGCAGCTTCAGCAGCAGGGGAACTACTTGCAAGCGCTGGAATGCA
TGGAGAGGGGCCTCGTGCTTCGGCAGCACTTCTTTGGGAGCGACAGTGAG
GAAGTTTGGAGCGCCTGTAAGATAGTCGGGGAGATGTGCAACCTTCTCGC
CATGACCTACCTGCAGCAGGAGGACTTCGGCATGGTGCTTGAGCTGTTGA
AGAAGGCGGAAATTCTTACCGAAAGGGATGATGCCGGGCGAGCGGTGACG
TACAACAACCTCGCGTGTTACTACCGTCGGCGCGGGAAGCTGCACTCCGC
GTTACAATACCTCCACAAGGCTCTCAAGATCGAAGCGAAAATGGGGTCGC
GGGTAGAGCACCCGGCTGACACCCACCTCAACACATGCGCGGTGCTTTCG
CAAATCGGGCGACATCAAGGAGCGCTGGAGCACGCTCAGTCGGCGCTCAT
TCTCCTGCAAGAAGAGCTGTTTGGAGGCGGGGCCGCGGTTGGGGACGCTG
GAGGGGAAGGCGGGGACCAGCCCCCGCGGGCGGATCGAATCGCCGTGCTG
GCCATCGCCTACCATAACATGGGCGTGGAGCAGGAGTTTCTCAAGAAGTT
TGAGCACAGCCTGCAATCCTACAGAAAAGGAGTCGAGGTGGCTCAGAAGT
ACCTGGGTGGGAACCACGCCGTCACCGTCACGCTCCGCAACTCCACCATG
GCCGCGCGGCGAGCAATAAGCGCTAGAGATAGCAAAGTGCGAGAGGATCT
GATCCGTCGCGGCAATCGGAGGCCACGGGGGGGCGCTTGTGGAGGAGGGG
AGCGAGCTGGCCGCCCGCGACAACCGAACTCCAACGTAGGGACAGGCGTG
CTGAGCCACGCCCTCTCCGCCGCTAGCATTGCCACTCCGCAGCAGACGGA
TCACATGCAGCAGCAGCTGCAGCAGCAGCAGCAGCATGAACATCAAGACG
AACGCCTACACAAACGTCCACCGGAGGGCAAGAATGAAGCAAGTATTGAG
CTTGGTGAGGAGGAGAAGGCTGAAATGGAGCGTGGTGCTGACGAGAAGGC
CGACAACGAAATTGAGCGTGGTGACGACGATGAGCTTGGTGAGAAGGAGA
AGGCTGAAATGGAGCGTGGTGCTGACGAGAAGGCCGACAACGAAATTGAG
CGTGGTGACGACGATGAGGCCGAAACTGATCGGGTCGCAAGGGGACTCAT
GCAGAGTACGGCTCTCGAGCCCGCACCACCACCGGCGATAGAAAAGCCAG
CGACGACAACGGAGGCCAAGGACGTGGGTTCGGAAGCGGAAGCGGAAGCA
GGGGCCGACGTGGGAGCAGAGGCGGAAGTGGGAGAAGAGGTGGAGGCAGA
GGTGGAGGCAGAGGCGAAGGCGGCGGAAGAGGACATGGCGAAGGATCCCC
GCAGGGAGTTGAGGAAAATGAGCGGTCCACTCGATGGCGACTCAGTCCTT
GGGGGGATGATTTCGCCAAGGCCAGCAGATCACACCGACGAGCACCAGGG
CGAAGCCGACGTAGGCGAAGGGTAG
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