mRNA_Ecto-sp6_S_contig9.18071.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18071.1
Unique NamemRNA_Ecto-sp6_S_contig9.18071.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18071.1 vs. uniprot
Match: D8LM15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM15_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.310e-33
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 2 
Query:  224 MSHSMLSLPRVSVWHLTAPAMSGNVKLDTAILAPRESFMRASLNSLQTRSWMTCWRGLAGRWTPWSSA 427
            MS S LSLP+ SVW+LTAPAMSGNVKLDT ILAPRESFMRASLNSLQTRSWMTCWRGLAGRWTPWSSA
Sbjct:    1 MSQSALSLPKASVWNLTAPAMSGNVKLDTVILAPRESFMRASLNSLQTRSWMTCWRGLAGRWTPWSSA 68
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BLAST of mRNA_Ecto-sp6_S_contig9.18071.1 vs. uniprot
Match: A0A6H5KL14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL14_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.670e-24
Identity = 59/110 (53.64%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:  224 MSHSMLSLPRVSVWHLTAPAMS------------------------------------------GNVKLDTAILAPRESFMRASLNSLQTRSWMTCWRGLAGRWTPWSSA 427
            MSHS LSLP+ S W+LTAPA+S                                          GNVKLDT  LAPRESFMRASLNSLQTRSWMTCWRGLA RWTPWSSA
Sbjct:    1 MSHSALSLPKASAWNLTAPALSAFQDIFMPVLAPHPARSALAGKRQRNSMLLLLLPACDFLVSAGNVKLDTVFLAPRESFMRASLNSLQTRSWMTCWRGLARRWTPWSSA 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM15_ECTSI1.310e-3391.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL14_9PHAE4.670e-2453.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:760785..767335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1534
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_002480.1
Cds size207
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18071.1prot_Ecto-sp6_S_contig9.18071.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 764969..766231 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350523.763516-UTR-Ecto-sp6_S_contig9:760784..7608471682350523.763516-UTR-Ecto-sp6_S_contig9:760784..760847Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 760785..760847 +
1682350523.7719324-UTR-Ecto-sp6_S_contig9:764792..7648231682350523.7719324-UTR-Ecto-sp6_S_contig9:764792..764823Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 764793..764823 +
1682350523.7797368-UTR-Ecto-sp6_S_contig9:764839..7649681682350523.7797368-UTR-Ecto-sp6_S_contig9:764839..764968Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 764840..764968 +
1682350523.8113825-UTR-Ecto-sp6_S_contig9:766231..7673351682350523.8113825-UTR-Ecto-sp6_S_contig9:766231..767335Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 766232..767335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350523.787779-CDS-Ecto-sp6_S_contig9:764968..7650351682350523.787779-CDS-Ecto-sp6_S_contig9:764968..765035Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 764969..765035 +
1682350523.795736-CDS-Ecto-sp6_S_contig9:765675..7657411682350523.795736-CDS-Ecto-sp6_S_contig9:765675..765741Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 765676..765741 +
1682350523.8032916-CDS-Ecto-sp6_S_contig9:766157..7662311682350523.8032916-CDS-Ecto-sp6_S_contig9:766157..766231Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 766158..766231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18071.1

>prot_Ecto-sp6_S_contig9.18071.1 ID=prot_Ecto-sp6_S_contig9.18071.1|Name=mRNA_Ecto-sp6_S_contig9.18071.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=69bp
MSHSMLSLPRVSVWHLTAPAMSGNVKLDTAILAPRESFMRASLNSLQTRS
WMTCWRGLAGRWTPWSSA*
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mRNA from alignment at Ecto-sp6_S_contig9:760785..767335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18071.1 ID=mRNA_Ecto-sp6_S_contig9.18071.1|Name=mRNA_Ecto-sp6_S_contig9.18071.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6551bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:760785..767335+ (Ectocarpus species6 EcLAC_371)
GGAAAAAACACAACAGTAGTCTGCCGCAAGAACCATCCATCGCCACGGGT
AGAAGTGAAGCAGGTGAAACAATAGAGTGATCCCGCTTTCCGACGCGTGG
CTTTGGGTTGCATGCTGTAACTGGCTGCAGGTGTTGACAGAGGGTAGATT
CTTTACCTTTACGTAAGATACCACACCCCTAAATCGTCGCGGTGTCCGAT
ATAACAAGTACCATGGTAGCTGTCTTTGCGAAATGCTGCTGCTGCTGTGT
TTCTAGGCTGCTTGGTGTGGGTTGTCAGCTGTCGAAGCTGACGACTTTGG
AAGCCAGCCTTTCTCTGGCCCTTTCAAGGTTTTCCCCAAACATCACCGTT
TTCGACACAAAAATATACTGCAAAATACAAGTGGCACAGCAGTCTTGGCA
ACAAAACATTCGTGCCCTGGTCTGTGCTAGATGTGCTGATCTTTGTGCAT
GTGATTTCATCCAAGGCAGAAGCAGAGTACAGGCCCGTAAATATAGAAGA
CAGAGAAAGGGGGGAGAGAGAGAGAGCACGCGAGGGGGGAGTGAGAGACA
CACGAAGTAAGGGTGTATGAGGTGTATATGAGGTGTATGAGAGGTTGCTG
GGAGAAAAAAATGAGCCCCCTCTACTGCTGTATGCACCCGTGGTAGCATA
CAGCTGTAACTCCAGTTTTTTAGACGTGTTGAGGAGACAGTGTTGGGCGA
AGTGGCTTACGCTGAGCAGCGAGGGACGCTGTCCTCTCGAGCTGCTGGCG
TTGTTCATGCGAGGTATAGGTAGGGTAAACACAGAGTGATTTATTATCCA
CACTCAGACGCCCAAGCTGTCTTCACCTGACGGTTACAGACTTGGAAACA
CGCCTTCACAATACTGCACAGAACCCATGCAGTAGAACCAGTCGTTCTTG
TACACAAATACTCCAACATTTCCTCTCGAGAACTACCGCCTTCTACAGCT
CTGATGCAGAAGACTAAATAAACTCTCTTCAGTGTCCTCTCAAAACCATG
TCAATGTCCTCTCGACGAAGTAACATTAGTACTTGCATATTCAACTCAAA
TCAAATTATCACTTCTTCACTAACTGCCAATCAATATTCATACTAGCAGC
GAATTTCTGTCCTTCAACACAGATCTCCCGATCCTCCAACACAAATCTTC
TATTTCCATCCTTCCTCCAGCGTCTTGACATCTTCACGCAGTCTTGTTCT
TCTTGAGCTTTGAATACTAATACCACACATCTACAGTACCATTCAACTTC
TATTTTCATGACTCCGTGTCTCCTTCGTCTTGGTCACCTGCTTTGATGTG
GTCCAATTTTCGCTCAAAGGGAAGTGTTCGGGCAAGTTGATTGCTGTTAA
CTATTGTTTCGTTTAAGCTCGCTCCTTCCGGCGGCAGTCGGCTCCTCTTT
CGGTGAAGTTGCCGCGCCAGTTGTGTCCTTCTGCACCTGGCCACATGTGA
CAACCCGCTCCTCAAGTGGCGTGGCTGCGACAGACAGTTAACCATATTTT
CTCTCTTTCGTTTCAAGCGTGGCGCATCCACTCGTTCATCATCATCTGCC
GCCGCTCGTTGTATCTTCTAGGTCTTCTCCTTTCGTTGCAATCAGCCCTT
TTCTCTTGTCTGGTAACGTATTCGCGCCAGTTGTATGCTTCACTTGCCAG
TATGGCACAGCCCGCTCCTCCTCCTCAAGTGGCGTGGCTGCGGCAGGCAG
TCAATTAAACACGCATCTATCTTCTAGGCGTTCTCCTTTCGTTGCAATCA
GCCCTTTTCTCTTGGTGTCGGAACTGCGTCATCATCATCATCACAGGTAT
CATTCCACCTGCAGTGCACGTATATAGCAGCCCGTTCTCTGGTGGCGGTA
CTGCATCAGGTATCATTCCACCTGCACGAGCAGTTCGTTCCTCCGTGTTG
AAACAGCCAGCTCTTCTCTGGGTACCCTTCTCTGGTGGCTTGACTGTGGG
GGCAGGTATCATTCCACCTGCACGCTGGTGCCTGTAGCAGCTCGCTCGTC
CGGTGGCGTTGCTGCAGCATTGTGTTATCTGTCTCTACCATGCCTGGGTA
GTTGTTTCTTTCCCGACAGCAGTGTTCGCCTGCTCGGTTCTTTCTTCCTT
GTCTTCTTCTATGTGCGTCGCGCGCAGTGGGCAGTCGTACCACCCATGTT
CTCTTGAGTTTCTGCAGTACCGACAACGAACGTCCTTTACGGTTCTTACC
ATTGTCCTGCCCTGACGCTTCGTTTCCTTATTGTGTACTACCTCCCGCAC
TTGCTGCACCGTTTCCGCCGTCCGACGGTCCGCGTGTCCCATGGTTGCGG
TTCGACGCAAAGTTGTTTCCGCTCGACGAGTTGTTGTCGCCGTCTCGTCC
GCGACGACCTTGGTTGCGGAATCCACGCGCTCCTCCGTGCATGACTGATG
AGCCGATCTCTCGGCCGGGGATGGATTTCCAGTCAGTGCCGCAGACTCTT
TCTCCACCCCAGTCATGATCTCCTCTCCCAGGCCTGCTTCGAACATGAGG
GCTCGCTGGAGAGAGATCCAACTGCTGTAGTGCGCCGACTTTCCGCTGAA
CGGTGCATATATATCCCTTCAGGATATATATCTATAGCGTTGGCGGAGGA
ACTCGATGTGGTTTACCTACCACGTTGGCTCATAACCTGTTGGGCGAAGT
GGCTTACGCTGAGCAGCGAGGGACGCTGTCCTCTCGAGCTGCTGGCGTTG
TTCATGCGAGGTGTAGGTAGGGTAAACACAGAGTGATTTATTATCCACAC
TCAGACGCCCAAGCTGTCTTTACCTGACGGTTACAGACTTGGAAACACGC
CTTCACAATACTGCACAGAACCCATGCAGTAGAACCAGTCGTTCTTGTAC
ACAAATACTCCAACAGACAGCATCAATCACCCGTAGCAAAAGAGCCGTAG
GAGTGCTTGTGTTGTAGTACTGCAGTACCGTACACCCATCATCACTTTTC
CCGATCCCGATCCTGCAAATCCTCCGTATGGGTCTTCCGATCACCACGTG
TAGAAGAGGAGGGTATATCGCCACATGGTGTATAACACCGTCTGGTGCTG
CTACTCTCACGCGTGCGTGTTGGAGGCACAAAATAAGCATTTTTTTCATG
CTTTCCTCCCAGATCCAGATCGTCCTCAGCCAGCAGAAACAGCTTTTGGT
TATTAAATGGGACCCTGCGAAGGGTCGCTTTTCCCGTAGGATGATGGTGC
ATCCGCTTTTCCTCAGCAGCTTCCGCTGTGGTTGAGGTCCAAAGAATATC
TGCAAACTTTCATCGTTGCAAGCTTGATCAGTGTACCACGGCAGTCAGCG
CTCAAGTTAGCTCTGATCCTTGATTCTCCTCAACGAACTTTCAAGATAAG
ATTCGTTCCCGTCGGGAGTTTGCCCTCAACAACTTTGAAGGTAGACATGC
ATAGCATGCCCAGCTGCTACGATCTAAAGCCTCACTGGAACGACCGTGCC
CTAGCGGACGATGACGATTCATTCAAGCCTTCAATGCTACCTACATTAGG
CCTTGCTTCAGGTTCATGTTTCTCATGAACGAGTGGACCGGGACGGCGTT
GACTGCTGTTGTATTCCTCAATCTCCGGCGGTAGGGGTCATATACACCCG
AAACAAAAGCGCACAATACAACCACCCTCCTTCGTCCCACCGATTGTCCA
TAAAAAAAAAAAAATGGGAACGAAAGATGTCGCGAATGATGGCAGGAAAT
CGAGTCGCCGGTTGCAGCCGTCTTCGTGGCGAGGTCGACCAAGGTACCGT
AGAGCGAAATACGGAGTGCCCTACAAGCAACAACTATCATCCTGCCACGC
TCGTCAAGCTCCTCCTTTTTGCGTGAACCTACAGCAACTTCGCCACGGAA
ATGCGCATTTAGAACCGCGCCAACGTGGAATGTTCTGACAACACAGCAGT
TGCTGCTATCATCCAGGCTTACTCGACACTTTGTTGTGATTTGTACGTCG
AGTTGTCCTCCAACGGGGCTTAGTCGACCTCCGCGCGCTTGCATTTTGAA
AAAAACAGACAGGTGTTCCGATACACACGAGAAAGAGACGTATTTATAGC
GAGAGAGAGAGAGGTGAGAAGGAGGGAGGAGCAGGCCTATTTGACGAGCT
ACTGCTGCTGCTGCTGCTGTCGCCCTGCCGTGGAAATGCTGCATCCCGCG
GCGGGTGCCGGCAGAAGAGAAAGCCCGAGGCTGGATGTCACACTCCATGC
TAAGTCTCCCGAGGGTGTCTGTGTGGCATCTCACCGCGCCAGCTATGTCA
GGTAGCTTGTCTTCTGTGGACAGTCACACCCCGTGAACCCCTCGGGTAGT
AGAGGGGGGCGAATCTCCAGAACGTTACCCTAGGGTAAAATAGGAACCGA
AGAGGAGGCAAGAGTACTTGTGAAGGTCCTTGTTTTTCTTGTGTTGCGTG
GTTTCTCGAGGAACACGTCCGAGCTACTCGTGCGCATGTTCAGATGACGG
TTGTCAAAAAATGCTGGGGCATGCCAACAAGCTCATGACCCAGGTGGGCC
TCTTTGTCGTGGGTGGAGCCTATTATTTGAGAGCGTCCAATGCCTGTGCC
GCATTTCACTGTGTGGTGTCCTCTAACCCCCGGACCGTCACCATACATGT
ATGCCTAATCTACCGCTTGCCACCGCTGATGTTGCTGCTGCTGCCGCATG
TCCCTGCGTACGTTCTGTTCTACGTCCGCTGCTGATGCACGCCTAACTTT
CGGTGGGACCCATGCGCAACGCGCACTGCTTTTAACCGCCTCTCCGCCAT
AGGCGTGTACAACAGCTTTTCAGGACACTTTCATGCCCGTTCTTGCTCCA
CGTCCGGCCCGTTCGGCATCAGGTTTGAAGCGACAGAGGACCTCCATGCT
GCTGCTGTTGTTGCCGTCGTGTGGTTTTCTCGTTGGCGCAGGCAACGTCA
AGCTCGACACGGCTATCTTGGCGCCGCGGGAGAGCTTCATGCGGGCATCG
TTGAACTGTGAGGTTTTCTCGTGATGTTGGCGCCCTTGAGACTGTTTTTA
CGTTTTTACTCTTGCGCTGCTCAAGTTGTGCGGTGACATCGTGTTTTCCA
ACGGTTCCATGCGGCGGGGGGGGGGGTGCCTGTTTACCGTACGTAGCACA
CGCATCCTACAACTTGTACGTGGATTGGTTTTGTTTTCCGTGCTTTCGGC
GATTGGGTGCAGTGAACTGCGGGTTGTGCGTCGCCAGGACTTGGATATTG
TTGGTCACATACGCACTCAGCACTTGAACGGTTCCCCTCGCATTCTGTTT
CTTTCGGAACATGGTGCAGACCGTCGCGCACCCTTCCCCCCGAAGTGTAA
CAGGAGGTGTCCTACGTCCCCCCGCCCTAGCGACAACCCCGCTCTTCCGC
GCTCTGTTTTCTTGCTCCCACAGCCTTGCAAACGAGATCCTGGATGACCT
GTTGGAGGGGTCTTGCAGGGAGATGGACTCCGTGGTCGTCGGCTTAGCTG
CGGTTTCCGTCAGAGACAGCGTGTCGTGACGAGCAAAAGGTCGGGAGAGG
CATTGCTGCTGCTGCTGCTGTCTCTTCTTCTTTTGTGTATCTCCGGGAAG
GAACACAGCTGTGTGTGCATAGATAGCTGGAGAGGAAGGGACTAGCGGTG
ATGTGACTGACCTTCGCGGGTAAAGCAAGAGCCGTGTTGAGCAGAGGTGC
GGGTTGACACTCCTCCTCCTCCTCCCGTCATCGCCGTACAGAGAGAGTCC
TGGAAGGACAAGGGACTCGATAGATACAAGTAGGCGGGCGGAGTAGACAG
AGAGACCTGGCCCCAAATACGGTGGGCCTTAGAGAGACAATGTAACACAT
GAGATATATACATGTAGGTTCGCGAATTCTTAGTCTTTTCTGTTTAATAC
GTATGAATAGCCCCGATTTTGCTGTAGATAGTACTATCATTAGCGTGCGT
TATTCTCAATTTCCTTTTTGATGCATTACAAGTACTTTATTTAGTATAGT
AGCTCGTTTGTTGCCGTGCTCTCAGTTCTAGGAAGTGTGCAGTTTTCGGG
GTGTCTTTCGTCCCGTGCGAGGTTTGCGTCGCGTCAGGTTGAGGTACTGA
GGTACAGCGATCGACGTTAATCTAACGCAACCCGTGCAGGGCCAACTCTC
CTGTCGGGGGAGAACTCTATAATTATGTGATCTCTTGGCCTTTTTTTTGC
CAATCGGGGTGCTGTTGATGAAAGAGAGACGGGCAGAGATTTTTTTTTGT
CTTGTGGCAAGGTCCCGCCCCCCAAATATAGCAGCGTGTTTGCTGGTAGA
CCCAAAGGCTGTTATTTCGGATCTACAGGAGGAGTGCCTCTTGATCTACC
CCAACTCCCGCTTGAGAAATCGATTGCCATAGACCGTCGTTGAATGAACC
ACAACATGACGACAGGCCTGAGAGACACGGTTCGTTCCTGCCATGCAAAC
TGCGGTCGATCGTTGCGGAGCGCTGTCTGCTACACTGCTGCTGCTTGTCT
AGTCATGCATGGCCCACAGCGACCTCTGGTGTTGTTGCAAGAAGGCTACT
GAGGACCGGGCGTTTCGTGCCGTTGTGTCGTAGATACCGGCTATATCCTA
C
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:760785..767335+

>mRNA_Ecto-sp6_S_contig9.18071.1 ID=mRNA_Ecto-sp6_S_contig9.18071.1|Name=mRNA_Ecto-sp6_S_contig9.18071.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:760785..767335+ (Ectocarpus species6 EcLAC_371)
ATGTCACACTCCATGCTAAGTCTCCCGAGGGTGTCTGTGTGGCATCTCAC
CGCGCCAGCTATGTCAGGCAACGTCAAGCTCGACACGGCTATCTTGGCGC
CGCGGGAGAGCTTCATGCGGGCATCGTTGAACTCCTTGCAAACGAGATCC
TGGATGACCTGTTGGAGGGGTCTTGCAGGGAGATGGACTCCGTGGTCGTC
GGCTTAG
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