mRNA_Ecto-sp6_S_contig9.18065.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18065.1
Unique NamemRNA_Ecto-sp6_S_contig9.18065.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18065.1 vs. uniprot
Match: D8LM21_ECTSI (Stn1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM21_ECTSI)

HSP 1 Score: 478 bits (1230), Expect = 9.960e-165
Identity = 255/298 (85.57%), Postives = 259/298 (86.91%), Query Frame = 3 
Query:  378 QRHAGTGVTHRGHSERHELGELLVVQGKLKRYRGAREVAITSASKPTDPNQEALHWLRCVELGKTVYRPPFRRDDYIDEELVAGSSQARPTQCGCGAAYAEAVGYCRCVAAPLALDPAFEFRDALLARLAAKEESLAGPDEHLRFQFARDVRDDPSLKTVAARVVAAAXXXXXXXXXARPGTSVGQRPAEAGAAAAA-PRGVMQQAKALELLRAVMSSLHRDGALHFLDRAKDVYVLVSRGRVLRPAVEEACRRRRLGLSQENEIIRALQGSALLHHVPGARIRACVHRMKKAGRSAQ 1268
            +RHAGTG THRGHSERHELGELLVVQGKLKRYRGAREVAITSASKPTDPNQEALHWLRCVELGKTVYRPPF+RDDYIDEELVAGSSQARPTQCGCGAAYAEAVGYCRCVAAPLALDP FEFRDALLARLAAKEESLAGPDEHLRFQFARD                                    RPAEAGAAAAA PRGVMQQAKALELLRAVMSSLHRDGALHFLDRA+DVYVLVSRGRVLRPAVEEACRRRRLGLSQENEIIRALQGSALLHHVPGARIRACV+RMKKAGRSAQ
Sbjct:  127 ERHAGTGATHRGHSERHELGELLVVQGKLKRYRGAREVAITSASKPTDPNQEALHWLRCVELGKTVYRPPFQRDDYIDEELVAGSSQARPTQCGCGAAYAEAVGYCRCVAAPLALDPTFEFRDALLARLAAKEESLAGPDEHLRFQFARD------------------------------------RPAEAGAAAAAAPRGVMQQAKALELLRAVMSSLHRDGALHFLDRARDVYVLVSRGRVLRPAVEEACRRRRLGLSQENEIIRALQGSALLHHVPGARIRACVYRMKKAGRSAQ 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM21_ECTSI9.960e-16585.57Stn1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:698544..703558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score477.6
Seed ortholog evalue5.4e-132
Seed eggNOG ortholog2880.D8LM21
Model size1316
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E4ZN@1,2SBUB@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-14_002570.1
Cds size1176
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18065.1prot_Ecto-sp6_S_contig9.18065.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 698684..703558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350523.3688004-UTR-Ecto-sp6_S_contig9:698543..6986831682350523.3688004-UTR-Ecto-sp6_S_contig9:698543..698683Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 698544..698683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350523.3775914-CDS-Ecto-sp6_S_contig9:698683..6987081682350523.3775914-CDS-Ecto-sp6_S_contig9:698683..698708Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 698684..698708 +
1682350523.385343-CDS-Ecto-sp6_S_contig9:700877..7010401682350523.385343-CDS-Ecto-sp6_S_contig9:700877..701040Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 700878..701040 +
1682350523.396544-CDS-Ecto-sp6_S_contig9:701796..7019461682350523.396544-CDS-Ecto-sp6_S_contig9:701796..701946Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 701797..701946 +
1682350523.4044738-CDS-Ecto-sp6_S_contig9:702156..7022711682350523.4044738-CDS-Ecto-sp6_S_contig9:702156..702271Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 702157..702271 +
1682350523.41264-CDS-Ecto-sp6_S_contig9:702835..7035581682350523.41264-CDS-Ecto-sp6_S_contig9:702835..703558Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 702836..703558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18065.1

>prot_Ecto-sp6_S_contig9.18065.1 ID=prot_Ecto-sp6_S_contig9.18065.1|Name=mRNA_Ecto-sp6_S_contig9.18065.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=392bp
MGPQSFVLELREAPHKGCARAGNPRGYRRLSRVARQQGHPPNRGFGRGGA
CQAGCDQGLRQLREVHTRRRDRAPAVHADQRHAGTGVTHRGHSERHELGE
LLVVQGKLKRYRGAREVAITSASKPTDPNQEALHWLRCVELGKTVYRPPF
RRDDYIDEELVAGSSQARPTQCGCGAAYAEAVGYCRCVAAPLALDPAFEF
RDALLARLAAKEESLAGPDEHLRFQFARDVRDDPSLKTVAARVVAAAAAV
TAAATAARPGTSVGQRPAEAGAAAAAPRGVMQQAKALELLRAVMSSLHRD
GALHFLDRAKDVYVLVSRGRVLRPAVEEACRRRRLGLSQENEIIRALQGS
ALLHHVPGARIRACVHRMKKAGRSAQQQQQQQQQQQQPESP*
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mRNA from alignment at Ecto-sp6_S_contig9:698544..703558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18065.1 ID=mRNA_Ecto-sp6_S_contig9.18065.1|Name=mRNA_Ecto-sp6_S_contig9.18065.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5015bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:698544..703558+ (Ectocarpus species6 EcLAC_371)
ATGAAGCGCGACCGTGCGTCTAGCGAAGAAGAGGTGGAAGCAGGGAAAGC
TGTTGTGGAGCGAAGAGGGGAAGGGAGAGGGGGACGAGCTACAGAGCCAG
CTCTAGACGGATCTAACACTCCTGGACTTCGGGTGCACGAATGGGGCCTC
AATCCTTTGTTTTGGGTGAGATGCTGTGCGTGCAACAACAGCAGCAGCAG
TCGCCGCCGTTGTCCTGTAGGTAACCACAGTTGTTGTTGTGCAGGCCATG
TGAAATGTTAACGACCATGATGCTGCTGCTACTACCGATAAACCACCTCA
TGCTTGTAGTCTATAGCAGTACACAGGATGCACCGAAGACTGACTGCCGT
TGTTCACAAAGCCACACCGGGTGACAAGACAAGCACCGCCTTAGTCGAGG
CTGAACGTTCGTTGCGAGATTCATCAGTTGGGCATCACCTGGACCAGATG
ATTTTTCCCCGCTGATGTCTGCCATCACGCCTCGTGTTCTTTCTCTATGC
TTGCCGAAAGGTCGCACCTTGTAAGGAGGCTTGCAGACCAGACCTTGAGC
AGGAAATTGGGGAATCGCTACCGACGTCGGGTGTCCCAACTTTGTACTGT
AGGTCCGGCACGTATCAACGCGATTCCCATCACCAGCGCAACTGCGTGCT
ATGGTCTTCGTATCTAGGACCCAAGACTGCTTGAACAAAGAGACAGGGGT
GTGTAGCCCACGAGAGATCGGCTGGTTGTGCTCTGCGCTCTGCATCAAGA
TTCCTGTCAGGAGCTCCCCCACCCGCATAGCAAACGCAACAAGAGCCCCG
ATTCCGATCTACGACGATCTACGTCCATCGGCTCCGGCACAACTTTCATC
GTACACGTCACATATCGGTGACGGTGACCTATTTTGGCGGCCTTGGTTGA
AAGGCATTATTTCGGCCCTGTAGCCACCTGGCGAGAGAGCGGAGGCAGAG
GTGAAAGCGGCCCAAATTTCCAGCTCTGCCAGGATTATCACGCATCGTGC
TCGCGGGTTCCAAGCCTCAGTTCATAGAAGTAGAATGGTTGGCAGCCACT
GTGCGTCAAATCACGCAGTCTTGGGTTCTAAATGCTGCGGATGGGAAGCC
GTCAGGCTGGAGTAACGCTCCCCCACAAGAGGATCAAGTGTAAGCCTCTC
AAGAAATAATTGTCCTTCTCAGAAGGTCTACAGTGCCCCACTCCCAGTCG
TGGCCTCGACTACATACCTCCCTAACGCGCGGAACGGAGATAGGCGAACA
TGCAACCATCGACTAAACTTGGGGAACACCATCAATTTTCCCTGACAGCC
CCCCCCTCCGCCCCCTTCAGTCAGTCTTGCAACGGCGGCACCCCCACTTT
TTCTCTAGGCATCCAGTTCGGTTCACGCACGCTGGCCTACCTACTGTAGT
TGTTCGGTGGGAAACGTCGTAAAAGCTTCTGGCTCTTGGATGGGGGTTCG
AATCTCTCCTTAGTAAAAAAACTCGCACTTTAGAAGTGAATAGCGCACAC
ATAGCCATAGTTTTCGTGTACACAACAGGACAGAGGGGAGGAACTTCTGA
TCCGTTCTCGCCTTGAAAATCGAAGGAACGCACCGCAGGAGCAAGACGAC
AGTGCACTTCTTCCGGTTGACCCCGGCTGGTGCTTCAAACAAGAACCGAA
ACGGTGTAGACGGGCGTGTGTATGCCGCGATAAGCAGCAGTAGGTAACAT
GCCAAAGCAGAATGGCGTAGCAGCAACTTAGGAATTGTATGGCGTACTCC
GTAGTACAGGCTAGCGGCAACAGCTTTAGTGGTAGCAGCAGCACGCTACG
TAAACGGCACTGCTGTCAGGGAAGACCTTTGAGTTTTTCAATACGCACCA
AGATGCCCCAGTGGTTCGGCGAAGGTGGAGATTGGGACGTCATCATTAGA
ATGTTTTTTCAACTGTTGTGTTGGGTGTTAGGCGTGCTCTCTCCTCTGCA
CGCCATCCAAGCAAACCTGACCCGGGAGTCAGCCATGTTTTATTTCTGAT
CGTTCCCTAGGCACACCGCGACGCAGCAGCACACCGTAGTCTATACCTCC
TCCGCGCGTTACGATACCTTTTGCAGCAGCTTATAGCTATTCCTGCCCCT
GCAGACGTAAATCACCCAGATGGCGCCCAGCAAAGATGAACAAAGATACA
AATCCTCCAGACCGTCTCCCTTGGCTTTTTGTTGACCTCCGCCCCCCCCC
TTCTCGGCTCTCGCTTGTCCCGCCATTTTCGCGGCGTAACTCCTGCCGTT
CTTGTACCTGCCCAAGGGCCCGACGTCCGTTTGTTGGTCACTTACTTCAT
GCGTGCGCTTGCTTCGGAACAAAACAATTGCCAGAGCTACGTGAAGCTCC
TCATAAGGGATGTGCACGGGCTGGGAACCCTAGGGGGTATCGACGACTCT
CACGTGTTGCACGGCAACAAGGCCATCCACCGAATAGAGGTTTCGGGCGT
GGTGGTGCATGTCAAGCCGGGTGCGACCAAGGCCTCCGGCAGCTACGGTG
AGAGATCGTGGGAAGAAGGGGAGGGGGGATAGAAGAGGCAAATCTGGCGT
CGGCTAAGGTGGGCATTCTCGCGCTTGAGGGGAGGGGGGATAGAGAGGCA
AAGCTGGCGTCGGCCAAAGTAGGCATTCTCGTGTATTTGGAAACCGTACC
CCGTGCAAACCGCTGTCGTCGGGGAACATCCCAGGGACGTTGTATTTGTC
ATGCTGTAACTCCTTTCGCTATCGATTGAGTCCACCTACCCTGCCAAGTT
TGTTTGTGATGCGGCCATAGGGCCTTTGCTGACCCCAGGGGTGTAGATGA
GGTTATGCTGCGGTCCCCGTGGGTGCATGATACAAATACCCATTGTGCAT
CGCTTTCCTTGTCTCGAAGAACCCGCGCGTTGTATATATGTATCGCTTCG
TGCTCTATTGTGTCCGCCACACGTCGTTGGCGATACAAAATATGGTTGAC
CACCGCTGTGCTATCGATGTAGCAGTCTGCCTACAGTCGTGCCGAGTGAA
CAACTATGCTGTCTTCGGACTCGTGCGAACTGTCACAGGTGTGGCTGTGG
TTGTGTTGGGGTTGACACCGACGAGTGACACCGTGCCTACACAGATCACT
ACGGTAGGGCGCAACGCCTCCGGTAGTTTTTTTTTTTTACCTTTCCTCAA
ATAAAACTTGTGCGCGCGGAATACGGGCAGCAAGAAAACAACTTGTTCAC
ACATGTCCGTCTGTCTGTGTGCCCGAACCCAAAAACCAACCGACAACCAA
CAGTGAAGTACATACTCGACGACGGGACCGGGCTCCTGCCGTGCACGCAG
ACCAGCGGCACGCTGGCACCGGGGTCACGCACCGCGGGCACTCTGAGAGG
CACGAGCTGGGCGAGCTGCTGGTCGTGCAGGGAAAGCTCAAGCGCTACAG
AGGGTGAGCGAAATGGGGGACAACGACAACGTTGTGCTGCCTCTCGACCA
GACTTCTCCAAGCGCGACGTGATCGAAACGGCCGCAAATATGTGTATACC
AGCGTCGTTGGTTAATTTTACATATTTCACCTGCAAAGACGGATGATGTC
CGTAGTTTTGAACCACGATTCCGATGCGGCCTCACCGCTTTGCAACAAAA
CCCGACCCGCCAGGGCGCGAGAGGTGGCCATCACCTCGGCAAGCAAGCCC
ACGGACCCCAACCAGGAGGCCTTGCACTGGTTGCGCTGCGTCGAGCTCGG
GAAAACGGTCTACCGCCCTCCGTTCCGGGTGAGAGCAGTTCCAAGTTGCC
ACAACAGAGATTAAAGAAATGGCAGCAGGTTGACACTTGCCTCCTCAAGT
AGTCCAGGGGCCAAGCGTGGATTGATGTCTAATGCTCGTTGTACAATTGT
TTTTTTGGGAGCGTCGTGGGCGATACGTTTTCGTTTCGATACGGTTTCGT
TTGCGTCTACACACACAACGCGTTCTCGCCTGGAACATGATTTGTCAGGA
TACAATCGTGGTGAAAAATACCTTCATGAACCATCTCCACCCTTGTCAGC
CCCCCACGACCCCGTGCCACACCTTGAGTATAGCTTGGGACTGTCGGCGC
TTTCGTGTTGAACCGCCCACATCCACAAACCGAGCTGTAAAGTGTGGCAA
TCAACTTTGTAACCAGTCTCGGTTCTGACCCGATCCCTGTTGCTACAGCG
GCTTCGAACCCAAACGATCGAAGCTCCGGCTCTGTCCCCACCAGCTATCT
GACCTGCGAACCCCTTTTCTCGATTCGATTGGCGACGGTGTCGACGTGGC
GTAAACAACGACGACGACGACCCCCCAAAACCGAACACGCAGCGAGACGA
CTACATCGACGAGGAGCTCGTGGCCGGATCGAGCCAGGCCAGGCCGACGC
AGTGCGGCTGCGGCGCCGCGTACGCGGAAGCCGTCGGGTACTGCCGCTGC
GTGGCGGCGCCCCTGGCGCTCGACCCGGCGTTCGAGTTCCGAGACGCGCT
GCTCGCCCGCCTGGCGGCCAAGGAGGAAAGCCTCGCGGGTCCTGACGAAC
ACCTCCGCTTCCAGTTCGCGCGAGACGTGAGAGACGACCCTTCCCTGAAG
ACCGTCGCCGCCCGGGTCGTGGCAGCAGCAGCAGCAGTAACAGCAGCAGC
AACAGCAGCGCGACCGGGTACTAGTGTGGGGCAGCGGCCGGCGGAGGCTG
GGGCGGCGGCGGCGGCACCGCGGGGGGTCATGCAGCAGGCGAAGGCGCTC
GAGCTCTTGAGGGCGGTCATGTCCAGCCTGCACAGGGACGGCGCCCTGCA
CTTCCTGGACAGGGCCAAGGACGTCTACGTGCTCGTGTCTCGCGGGAGGG
TGTTGCGGCCCGCGGTGGAGGAGGCGTGCCGCCGCCGCCGCCTGGGGTTG
TCTCAGGAGAACGAGATCATCCGGGCCCTGCAGGGGTCGGCCCTGCTGCA
CCACGTGCCCGGGGCGCGGATACGGGCGTGCGTGCACCGCATGAAGAAGG
CGGGTAGATCGGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CCAGAGAGCCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:698544..703558+

>mRNA_Ecto-sp6_S_contig9.18065.1 ID=mRNA_Ecto-sp6_S_contig9.18065.1|Name=mRNA_Ecto-sp6_S_contig9.18065.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1176bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:698544..703558+ (Ectocarpus species6 EcLAC_371)
ATGGGGCCTCAATCCTTTGTTTTGGAGCTACGTGAAGCTCCTCATAAGGG
ATGTGCACGGGCTGGGAACCCTAGGGGGTATCGACGACTCTCACGTGTTG
CACGGCAACAAGGCCATCCACCGAATAGAGGTTTCGGGCGTGGTGGTGCA
TGTCAAGCCGGGTGCGACCAAGGCCTCCGGCAGCTACGTGAAGTACATAC
TCGACGACGGGACCGGGCTCCTGCCGTGCACGCAGACCAGCGGCACGCTG
GCACCGGGGTCACGCACCGCGGGCACTCTGAGAGGCACGAGCTGGGCGAG
CTGCTGGTCGTGCAGGGAAAGCTCAAGCGCTACAGAGGGGCGCGAGAGGT
GGCCATCACCTCGGCAAGCAAGCCCACGGACCCCAACCAGGAGGCCTTGC
ACTGGTTGCGCTGCGTCGAGCTCGGGAAAACGGTCTACCGCCCTCCGTTC
CGGCGAGACGACTACATCGACGAGGAGCTCGTGGCCGGATCGAGCCAGGC
CAGGCCGACGCAGTGCGGCTGCGGCGCCGCGTACGCGGAAGCCGTCGGGT
ACTGCCGCTGCGTGGCGGCGCCCCTGGCGCTCGACCCGGCGTTCGAGTTC
CGAGACGCGCTGCTCGCCCGCCTGGCGGCCAAGGAGGAAAGCCTCGCGGG
TCCTGACGAACACCTCCGCTTCCAGTTCGCGCGAGACGTGAGAGACGACC
CTTCCCTGAAGACCGTCGCCGCCCGGGTCGTGGCAGCAGCAGCAGCAGTA
ACAGCAGCAGCAACAGCAGCGCGACCGGGTACTAGTGTGGGGCAGCGGCC
GGCGGAGGCTGGGGCGGCGGCGGCGGCACCGCGGGGGGTCATGCAGCAGG
CGAAGGCGCTCGAGCTCTTGAGGGCGGTCATGTCCAGCCTGCACAGGGAC
GGCGCCCTGCACTTCCTGGACAGGGCCAAGGACGTCTACGTGCTCGTGTC
TCGCGGGAGGGTGTTGCGGCCCGCGGTGGAGGAGGCGTGCCGCCGCCGCC
GCCTGGGGTTGTCTCAGGAGAACGAGATCATCCGGGCCCTGCAGGGGTCG
GCCCTGCTGCACCACGTGCCCGGGGCGCGGATACGGGCGTGCGTGCACCG
CATGAAGAAGGCGGGTAGATCGGCGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACCAGAGAGCCCGTGA
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