mRNA_Ecto-sp6_S_contig9.18060.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18060.1
Unique NamemRNA_Ecto-sp6_S_contig9.18060.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18060.1 vs. uniprot
Match: D8LM24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM24_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.320e-39
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:    1 EMGYTWSHIKMHAARVSGWLPRDPIVGCDMADEMT*TVLRGVMMKVPLMATASTVRSLKNLEERAPAATEKFSG 222
            EMGYTWS IKMHAARVSGWLPRDPIVGC+ ADEM  TVLRGVMMKVPLM TASTVR LK+LEERAPAATEKFSG
Sbjct:    9 EMGYTWSDIKMHAARVSGWLPRDPIVGCNTADEMAWTVLRGVMMKVPLMVTASTVRYLKDLEERAPAATEKFSG 82
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BLAST of mRNA_Ecto-sp6_S_contig9.18060.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.580e-10
Identity = 45/131 (34.35%), Postives = 54/131 (41.22%), Query Frame = 1 
Query:    4 MGYTWSHIKMHAARVSGWLPRDPIVGCDMADEMT*TVLRG------------------------------------------------------------VMMKVPLMATASTVRSLKNLEERAPAATEKF 216
            M YTWS IKMHAA VSGWL RDPIVGCD  +EM  T+L                                                              VM+KVPLMA AS+V+S +++ E AP + E F
Sbjct:  295 MRYTWSVIKMHAAPVSGWLCRDPIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHF 425
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BLAST of mRNA_Ecto-sp6_S_contig9.18060.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.700e-10
Identity = 45/131 (34.35%), Postives = 54/131 (41.22%), Query Frame = 1 
Query:    4 MGYTWSHIKMHAARVSGWLPRDPIVGCDMADEMT*TVLRG------------------------------------------------------------VMMKVPLMATASTVRSLKNLEERAPAATEKF 216
            M YTWS IKMHAA VSGWL RDPIVGCD  +EM  T+L                                                              VM+KVPLMA AS+V+S +++ E AP + E F
Sbjct:  300 MRYTWSVIKMHAAPVSGWLCRDPIVGCDEDNEMADTILAHIFMEPLSTFCSRLGLPQCVINDIVEETMRAGVHGPAVTIFVVMSLLCLAEKQGAEDADVVVMVKVPLMAAASSVKSFQDILEHAPVSLEHF 430
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM24_ECTSI2.320e-3989.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ60_9PHAE6.580e-1034.35Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K5C0_9PHAE6.700e-1034.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:663521..664509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size222
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002620.1
Cds size105
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350522.9348688-UTR-Ecto-sp6_S_contig9:663520..6636221682350522.9348688-UTR-Ecto-sp6_S_contig9:663520..663622Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 663521..663622 -
1682350522.9538198-UTR-Ecto-sp6_S_contig9:664389..6644011682350522.9538198-UTR-Ecto-sp6_S_contig9:664389..664401Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 664390..664401 -
1682350522.9740086-UTR-Ecto-sp6_S_contig9:664506..6645091682350522.9740086-UTR-Ecto-sp6_S_contig9:664506..664509Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 664507..664509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350522.9643226-CDS-Ecto-sp6_S_contig9:664401..6645061682350522.9643226-CDS-Ecto-sp6_S_contig9:664401..664506Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 664402..664506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18060.1prot_Ecto-sp6_S_contig9.18060.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 664402..664506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18060.1

>prot_Ecto-sp6_S_contig9.18060.1 ID=prot_Ecto-sp6_S_contig9.18060.1|Name=mRNA_Ecto-sp6_S_contig9.18060.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=35bp
MGYTWSHIKMHAARVSGWLPRDPIVGCDMADEMT*
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mRNA from alignment at Ecto-sp6_S_contig9:663521..664509-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18060.1 ID=mRNA_Ecto-sp6_S_contig9.18060.1|Name=mRNA_Ecto-sp6_S_contig9.18060.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=989bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:663521..664509- (Ectocarpus species6 EcLAC_371)
GAGATGGGCTACACTTGGTCCCACATCAAGATGCACGCCGCTCGAGTGTC
GGGTTGGCTGCCCCGAGACCCGATTGTGGGATGCGACATGGCGGACGAGA
TGACATAGACTGTTCTACGAGTGAGTCCATGCCTGTCTTGTAGGTTGCCA
TAACTGCTTGCTTTACGAAGCAAAGACCAGATGCGCCATCGCATTTTCAC
GATGATACCGTAGTTGCATGTGAAGCAACACAATGCACGCGACAACCAAA
TACATATCCATCTCTCACCTCTCCTCGTTCTTGATTCACCGTACATATGC
ACCCCTTCGTTGTACTTGTCCAATGATCTTCTTCTGTGGTTACCACCGCT
GACGACCTTCTGCACCCAGCTTGGCCTACCGAAGTGTGTAATCGGCGATA
TAGCCGAGGAAACGCTGAAGGCTGACGCGCATGGTCCAGCACACACGGTA
TTTGTTGTCATGCGGCTCGTCTGCTTGGCGGAGAAGCAGGGGGCAGGAGA
TGTCGACGTGGTAGTAAGCGAAGGCCGTTGCACTCGAAAATGACGCAGTT
GTATAAATAGGTTGTCGTGGACGCCCGCCTGACCGATACTTCTTCAGTTA
TCGTCGTGTCTTCATCGCCTCCGTTCTCCAACCACAAAACGGCTTCTGTG
CCGTGCCACCCACCACTTGATGTATTGTTCTTTCATCATGTTGAAAATAA
AACTGAAAACCAAAAGGACGCAACCGACGCTTATCCCCCTCGCCCTCTTC
CCTAGCTCTTTGGCTGTTTGTGAGGAGAGCAGAAATTGCTTGCGTAGCGC
ATGCATAAACAGTTCATCATGAAATACTACGTGACCGCTTTCGTAAAACA
ATGTGCATCTGTTTCTCATTGGTGCCCCATCGTTCAGGGGGTGATGATGA
AGGTCCCCCTGATGGCCACCGCCAGCACAGTGAGGTCTTTGAAGAACCTC
GAGGAACGCGCTCCGGCAGCCACGGAGAAGTTCAGTGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:663521..664509-

>mRNA_Ecto-sp6_S_contig9.18060.1 ID=mRNA_Ecto-sp6_S_contig9.18060.1|Name=mRNA_Ecto-sp6_S_contig9.18060.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:663521..664509- (Ectocarpus species6 EcLAC_371)
ATGGGCTACACTTGGTCCCACATCAAGATGCACGCCGCTCGAGTGTCGGG
TTGGCTGCCCCGAGACCCGATTGTGGGATGCGACATGGCGGACGAGATGA
CATAG
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