mRNA_Ecto-sp6_S_contig9.18053.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18053.1 vs. uniprot
Match: A0A6H5KMM5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM5_9PHAE) HSP 1 Score: 1619 bits (4192), Expect = 0.000e+0 Identity = 1040/1362 (76.36%), Postives = 1070/1362 (78.56%), Query Frame = 1
Query: 223 MASDEDKSHAPNGGGTPVLDTSWIDNSAVVAVASXXXXXXXXXXXXXXXXXXXRRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGXXXXXXXXXXXXXXXXXXDQEFGGS-AELTILRPPPQRDTDAAVTSPGADSAAAISVPAPPSGSTASPDTDLPDPTAVADLFEAEEGTTPAPRPSPLGTLNNNETKPSSSSAPKK-SEGKQEPLGQASSAAVARGRLSRRATFGGADARIRLEAENLAPVLPSRPPNPVPAAPARTATRSPRAMDGEVVGAAEEQASGLSTAAAAPVTRPGDGEETQERVPXXXXXXXXXXXXXXXXXXXRSIVMPCEAQPLMDSDLGDGHAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSRGSSSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEVAGDSMEWGLEGGEPRLVSQPVRRESKEQKRGLVLRIK---PLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASRVREFAAARRVAXXXXXXXXXXXXXXXACSETAVDGMMPGVEKSASSSAKGTAIAVACTSPTRAEAASKSRRDGEGLVADPATDACPAASGVTVEESPTEKESLPPGAAXXXXXXXXXXTPSKKIDGGGAVVAIEEGEARDDASGAEEADVLAMTDGITQETSPEAAAETPRTITPGEGGGVGTTAAVATNAAEIETLVPSNEAAVVDGAGQEEAMAEAL-------------------------------------------------------------------------------------------------------------------------------------GRDGAPLAACGNRVGSVSERVEEAVSAYSPRRGGQTPRIYTTGHPTSRNGGXXXXXXXXXXXXXXXXXXXSSPFVEQGQHEESLTGGTPGPGGMAWKASPFGVGSPFSAAAYGAGAPTVPPGAGVAVSPGQDDEEGAEEIAALEERLWSVVDAALREYHDGVALVRARRNHHAFATAAAASEAEKISSALSCVPDAGAAATPPPAAQVGETAASMTNSGLGPKEDAFASGLPAKAAPVATTPLTDDVDRTRAVAAPAAETVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSRAWGGAGAEXXXXXXXXXXXXXQARGGKPRRRSLAKAFSSHKTRKEPKAHEGAGARPAAQAAGNESEARGDGVGGGKTTTLTCRLCCRNACDTVMKPCQHSACGVCVDKLRDQAEQSGQALSCPWDRRGIDEICPLQEN 3894
MAS+EDKS+APNGGG PVLDTSWID+SAVVAVA RRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSG XXXXX DQEFGG AE+TILRPPPQRDTDAAVTSPGADSAAAISVPA PSGSTASPDTDLPDPTAVADLFEAEEGTT A RPSPLGTLNNNETKPSSSSAPKK SEGKQ+PLGQASSAAVARGR SRRATFGGADARIRLEAENLAPVLPS+PPNPVPAA A TATRSPR MDGEVVGA EEQASGLSTA AA TRPGDGEETQ+RV XXXXXXXXXXXXXXXXXXXRSIVMPCEAQPLMDSDLG+ HAEA XXXXXXXXXXXXXXXXXXXXXXXXXX PS+GS+STTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCE AGDSMEWGLEG EPRLVSQPVRRESKEQKRGLVLRIK PLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYK PYLRHVRDVRASRVREFAAA XXXXXXXXXXXXXXXAC ETAVDGMMPGVEK ASSS KGTAI+VAC SPTRAEAASKSRR+GEGLVADPATDA AAS VTV E KESLPPGAA TPSKKIDGGGAVVAI EGEARDD SG EEADVL +T+G TQE SPEAAAETPRT+T GE VG TAAVA NAA IETLV SNEAAVVDGAG+E+AMAEAL GRDGAPLAACGNRV S+SERVEEAVSAYSPRRGGQTP I T +PTSRNGG SSPFVEQGQHEESL GGTPGPGG AWKAS FGVGSPFSAAAYGAGAPTVPP GVAVSPGQDD EGAEEIAALEERLW+VVDAALREYHDGVALVR+RRNHHAFATA AASE E+ S+ALSCVPDAGAAATPPPAAQVGETAAS T+SGLG +E+A+ASGLPAKAAPV TTPLT DVDRTRAVAAPAA TV+ DGQPTPDSPLLPLLQLRLSEEEDDERFEYS AWGGAGA XXXXXXXXXXXX+ARGGKPRRRSLAKAFSSHKTRKEPK HEGAGAR AAQ AG ESEARGDGVGGGKTT LTC NACDTVMKPCQHSAC VCVDKLR Q EQSGQALSCPWDRRG+DEICPLQEN
Sbjct: 1 MASEEDKSNAPNGGGAPVLDTSWIDDSAVVAVAYGGDSGGVTRGRGGGKRRTRRRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGGDXXXXXNHQKSRSPSSHDQEFGGGLAEVTILRPPPQRDTDAAVTSPGADSAAAISVPASPSGSTASPDTDLPDPTAVADLFEAEEGTTLASRPSPLGTLNNNETKPSSSSAPKKKSEGKQDPLGQASSAAVARGRRSRRATFGGADARIRLEAENLAPVLPSKPPNPVPAARAPTATRSPRTMDGEVVGAVEEQASGLSTAIAAAATRPGDGEETQKRVXXXXXXXXXXXXXXXXXXXXRSIVMPCEAQPLMDSDLGEDHAEAETPNMPPXXXXXXXXXXXXXXXXXXXXXXXXXX-PSQGSTSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEAAGDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIKVGDPLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKVPYLRHVRDVRASRVREFAAAXXXXXXXXXXXXXXXXXXXACRETAVDGMMPGVEKRASSSVKGTAISVACISPTRAEAASKSRRNGEGLVADPATDAFAAASRVTVGELAAAKESLPPGAASWGVDNNGD-TPSKKIDGGGAVVAIGEGEARDDVSGGEEADVLTITEGTTQEASPEAAAETPRTVTSGERLYVGVTAAVAKNAAAIETLVSSNEAAVVDGAGEEKAMAEALVRGEVQEVEDLEVWKDMTAPVVAGGGVETIRESAAGEVNLDSSPSSHGTPEAVVPHPLSARLREPHGDSGLETAAIHPPFSHGVPETHGVFVPEESSASRVPETSTPRVLATHGVVSPTTTSSVNAGSSGDEQGRDGAPLAACGNRVDSISERVEEAVSAYSPRRGGQTPMISATANPTSRNGGGSSVRVLGPPSSPPGSGGASSPFVEQGQHEESLGGGTPGPGGTAWKASHFGVGSPFSAAAYGAGAPTVPPAGGVAVSPGQDD-EGAEEIAALEERLWAVVDAALREYHDGVALVRSRRNHHAFATAGAASETEENSTALSCVPDAGAAATPPPAAQVGETAASRTSSGLGLEEEAYASGLPAKAAPVDTTPLTGDVDRTRAVAAPAAATVEHDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWGGAGA--XXXXXXXXXXXXKARGGKPRRRSLAKAFSSHKTRKEPKVHEGAGARSAAQVAGIESEARGDGVGGGKTTRLTCXXXXXNACDTVMKPCQHSACSVCVDKLRSQGEQSGQALSCPWDRRGVDEICPLQEN 1357
BLAST of mRNA_Ecto-sp6_S_contig9.18053.1 vs. uniprot
Match: D8LM31_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM31_ECTSI) HSP 1 Score: 1404 bits (3633), Expect = 0.000e+0 Identity = 962/1228 (78.34%), Postives = 975/1228 (79.40%), Query Frame = 1
Query: 223 MASDEDKSHAPNGGGTPVLDTSWIDNSAVVAVASXXXXXXXXXXXXXXXXXXXRRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGXXXXXXXXXXXXXXXXXXDQEFGGSA-ELTILRPPPQRDTDAAVTSPGADSAAAISVPAPPSGSTASPDTDLPDPTAVADLFEAEEGTTPAPRPSPLGTLNNNETKPSSSSAPKK-SEGKQEPLGQASSAAVARGRLSRRATFGGADARIRLEAENLAPVLPSRPPNPVPAAPARTATRSPRAMDGEVVGAAEEQASGLSTAAAAPVTRPGDGEETQERVPXXXXXXXXXXXXXXXXXXXRSIVMPCEAQPLMDSDLGDGHAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KPSRGSSSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEVAGDSMEWGLEGGEPRLVSQPVRRESKEQKRGLVLRIKPLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASRVREFAAARRVAXXXXXXXXXXXXXXXACSETAVDGMMPGVEKSASSSAKGTAIAVACTSPTRAEAASKSRRDGEGLVADPATDACPAASGVTVEESPTEKESLPPGAAXXXXXXXXXXTPSKKIDGGGAVVAIEEGEARDDASGAEEADVLAMTDGITQETSPEAAAETPRTITPGEGGGVGTTAAVATNAAEIETLVPSNEAAVVDGAGQEEAMAEALGRDGAPLAACGNRVGSVSERVEEAVSAYSPRRGGQTPRIYTTGHPTSRNGGXXXXXXXXXXXXXXXXXXXSSPFVEQGQHEESLTGGTPGPGGMAWKASPFGVGSPFSAAAYGAGAPTVPPGAGVAVSPGQDDEEGAEEIAALEERLWSVVDAALREYHDGVALVRARRNHHAFATAAAASEAEKISSALSCVPDAGAAATPPPAAQVGETAASMTNSGLGPKEDAFASGLPAKAAPVATTPLTDDVDRTRAVAAPAAETVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSRAWGGAGAEXXXXXXXXXXXXXQARGGKPRRRSLAKAFSSHKTRKEPKAHEGAGARPAAQAAGNESEARGDGVGGGKTTTLTCRLCCRNACDTVMKPCQHSACGVCVDKLRDQAEQSGQALSCPWDRRGIDEICPLQENN 3897
MAS+EDK HAPNGGGT VLDTSWIDNSAVVAV XXXXXXXXXXXXXXXXXXXRRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGXXXXXXXXXXXXXXXXXX ELTILRPPPQRDTDAAVTSPGADSAAAISVPA PSGSTASPDTDLPDPTAVADLFEAEEGTTPAPRPSPLGTLNNNETKPSSSSAPKK SEGKQEP GQASSAAVARGRLSRRATFGGADARIRLEAENLAPVLPS+PPNPVPAAPA TATRSPRAMDGEVVGAAEEQASGLSTAAAAPVTRPGDGEETQERVPXXXXXXXXXXXXXXXXXXXRSIVMPCEAQPLMDSDLGDGHAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KPSRG++STTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEVAGDSMEWGLEG EPRLVSQPVRRESKEQKRGLVLRIKPLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASRVREFAAAR XXXXXXXXXXXXXXXAC ETAVDGMMPGVEKSASSS KGTAI+VACTSPTRAEAASKSRRDGEGLVADPATDA PAASGVTVEESPTEKESL PGAA TPSKKIDGGGAVVA+EEGEARDDASGAEEADVLAMTDGITQETSPEAAAETPRTITPGEGGGVGTTAAVATNAAEIETLVPS+EAAVVDGAGQEEAMAEALGR T++ +VGE AASMT+SGLGPKEDA+ASGLPAKAAP ATTPLTDDV RTRAVAAPAA TVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYS AWG AGAE XXXXXXXXX QA GGK RRRSLAKAFSSHKTRKEPKAHEG GARPAAQAAGNESEARGDGVGGGKTTTLTCRLCCRNACDTVMKPCQHSACGVCVDKLR QAEQSGQALSCPWDRRG+DEI PLQE N
Sbjct: 1 MASEEDKRHAPNGGGTLVLDTSWIDNSAVVAVXXXXXXXXXXXXXXXXXXXXXRRTLSPSIGKHNYMSNVDLNDPMKYPSLPSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXELTILRPPPQRDTDAAVTSPGADSAAAISVPASPSGSTASPDTDLPDPTAVADLFEAEEGTTPAPRPSPLGTLNNNETKPSSSSAPKKKSEGKQEPRGQASSAAVARGRLSRRATFGGADARIRLEAENLAPVLPSKPPNPVPAAPAPTATRSPRAMDGEVVGAAEEQASGLSTAAAAPVTRPGDGEETQERVPXXXXXXXXXXXXXXXXXXXRSIVMPCEAQPLMDSDLGDGHAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSRGNTSTTNSPADELPLSSINVVSCLSRPLAAQRGWPVGDEDTRKRLFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEVAGDSMEWGLEGDEPRLVSQPVRRESKEQKRGLVLRIKPLFDLMDKASKDEKLKAESATGVVSRKAAPDGFCYEDRETGEPVEPGAYKGPYLRHVRDVRASRVREFAAAR---XXXXXXXXXXXXXXXACPETAVDGMMPGVEKSASSSVKGTAISVACTSPTRAEAASKSRRDGEGLVADPATDAFPAASGVTVEESPTEKESLLPGAALGGGVDNNGDTPSKKIDGGGAVVAVEEGEARDDASGAEEADVLAMTDGITQETSPEAAAETPRTITPGEGGGVGTTAAVATNAAEIETLVPSDEAAVVDGAGQEEAMAEALGR-------------------------------------------TTK--------------------------------------------------------------------------------------------------------------------------------------------------------------KVGEIAASMTSSGLGPKEDAYASGLPAKAAPAATTPLTDDVGRTRAVAAPAAATVDTDGQPTPDSPLLPLLQLRLSEEEDDERFEYSLAWG-AGAEAGXXXXXXXXX--QA-GGKARRRSLAKAFSSHKTRKEPKAHEGVGARPAAQAAGNESEARGDGVGGGKTTTLTCRLCCRNACDTVMKPCQHSACGVCVDKLRGQAEQSGQALSCPWDRRGVDEIRPLQEKN 1020
BLAST of mRNA_Ecto-sp6_S_contig9.18053.1 vs. uniprot
Match: A0A835Z9P5_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P5_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 8.300e-14 Identity = 63/166 (37.95%), Postives = 89/166 (53.61%), Query Frame = 1
Query: 1507 LFRAFYGAAPGSQRARRVAARLFCLTGYALSAVAPEDARVLCEVAGD--------SMEWGLEGGE--------PRLVSQP--VRRESKEQKRGLVLRIKPLFDLMDKASKDEKLKAESATGVVSRKAAPDG-FCYEDR-ETGEPVEPGAYKGPYLRHVRDVRASRV 1944
L R + A PG QRARR+AAR++CL+GY LSAVA DA +LC +++W + PRL + P +R S QKR LVLR++P+ + M+ + E+ E+ATG+ +A DG + Y D G V P Y YL+H+ VRA R+
Sbjct: 328 LCREYAAATPGGQRARRIAARVYCLSGYPLSAVAATDAELLCAARXXXXXXXXXAALDWPTDPRRDDPAAPPLPRLDALPAAMRGASNAQKRALVLRLRPVLERMEASGSVERAALEAATGLACERA--DGMYRYRDGGRAGRIVAPALYAERYLQHLAAVRAERL 491 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18053.1 >prot_Ecto-sp6_S_contig9.18053.1 ID=prot_Ecto-sp6_S_contig9.18053.1|Name=mRNA_Ecto-sp6_S_contig9.18053.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1300bp MRRDLRTGVAFLRRKTPRYSTVGHFHHNQCEGEERLRVSTGCSTPEVCNNback to top mRNA from alignment at Ecto-sp6_S_contig9:613724..619337+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18053.1 ID=mRNA_Ecto-sp6_S_contig9.18053.1|Name=mRNA_Ecto-sp6_S_contig9.18053.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5614bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:613724..619337+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:613724..619337+ >mRNA_Ecto-sp6_S_contig9.18053.1 ID=mRNA_Ecto-sp6_S_contig9.18053.1|Name=mRNA_Ecto-sp6_S_contig9.18053.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3900bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:613724..619337+ (Ectocarpus species6 EcLAC_371)back to top |