mRNA_Ecto-sp6_S_contig9.18031.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: D7G8F8_ECTSI (RPAP3_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8F8_ECTSI) HSP 1 Score: 1369 bits (3544), Expect = 0.000e+0 Identity = 746/769 (97.01%), Postives = 752/769 (97.79%), Query Frame = 1
Query: 1 MTGKGVHDAYGKDGPGAAAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPKTHVRVESFPLPAPKPRGYSQPGTPIEEGLPPTVTNAAVSATNHNASVTGDEDTAAPYSSVLQESTDKRATNEATVYSYQARTVVEELPDEAEATLATPIPSPRAPTNAVSSVQSVSLPTASIAVAAQNERGGDAVPRSYGRVDRDITVDPAGDKPKIATVEGSFTKTTTPGAATPSEVTDVAAAHTVRPAVSTDLASKTGPPALSLVDVGAKEVTEQASAGGEGNSLSRGAHPVKEEATCPSLEARTEGKELCAPTQTPQQGRPSTPAPACRAMAHALQLPTTGYQFESMWRGTDGSPEGRLELLRAVPPSTIAKIFRRTPIEVELLGSVLQELGKAFLPRRPATALRWLKSLSKASRFSMTVALLGEEDGRAAAREVLRRLEAASPTKVDPKDVDVLRKQFSC 2307
MTGKG HDAYGKDGPGAAAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQL+RKAMSESSS GNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRND ADGRPHI VNAANG GATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRS SRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQ+RAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPKTHVRVESFPLPAPKPRGYSQPGTPIEEG+PPTV NAAVSATNHNASVTGDEDTAAPYSSVLQESTDKRATNEATVYSYQART+VEELPDEAEATLATPIP+PRAPTNAVSSVQSV LPTASIAVAAQNERGGDAVPRSYGRVDRDITVDPAGD PKIATVEGS TKTTTPGAATPSE TDVAAAHTVRPAVSTDLASKTGPPALSLVDVGAK VTEQASAGGE N+LSRG HPVKEEATCPSLEARTE KELCAPTQTPQQGRPSTPAPACRA AHALQLPTTGYQFESMWRGTDGSPEGRLELLRAVPPSTIAKIFRRTPIEVELLG VLQELGKAFLPRRPATALRWLKSLSKASRFSMTVALLGEEDGRAAAREVLRRLEAASPTKVDPKDVDVLRKQFSC
Sbjct: 1 MTGKGDHDAYGKDGPGAAAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLSRKAMSESSSSGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDGADGRPHINVNAANGGGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSCSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQQRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPKTHVRVESFPLPAPKPRGYSQPGTPIEEGVPPTVANAAVSATNHNASVTGDEDTAAPYSSVLQESTDKRATNEATVYSYQARTIVEELPDEAEATLATPIPTPRAPTNAVSSVQSVPLPTASIAVAAQNERGGDAVPRSYGRVDRDITVDPAGDTPKIATVEGSLTKTTTPGAATPSEATDVAAAHTVRPAVSTDLASKTGPPALSLVDVGAKAVTEQASAGGEDNNLSRGTHPVKEEATCPSLEARTEDKELCAPTQTPQQGRPSTPAPACRATAHALQLPTTGYQFESMWRGTDGSPEGRLELLRAVPPSTIAKIFRRTPIEVELLGGVLQELGKAFLPRRPATALRWLKSLSKASRFSMTVALLGEEDGRAAAREVLRRLEAASPTKVDPKDVDVLRKQFSC 769
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: K3WL17_GLOUD (RPAP3_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL17_GLOUD) HSP 1 Score: 174 bits (440), Expect = 1.320e-42 Identity = 135/359 (37.60%), Postives = 187/359 (52.09%), Query Frame = 1
Query: 40 GPGAAAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPK-THVRVE 1113
G A+ +VQHQIR NA +Q+Y +DL SWEKSI +++ RA P +++ D P GDG + + A + AGHTYDKGY KWAKFD+DAALR D++ S+ XXXXXXXXX + A +V+ + P + T+ SR E+ ERE GN + +GD+ A+K YTRCLG N +++ SNRAMA+LK +EFGKAE D + AL++DP H+KSL RR ARN+LGKHR AL D + AAE+DP S+Q++ ++ T E ++T ++RAPK T ++E
Sbjct: 5 GASASTLQVQHQIRANAAQLQDYFSDLYSWEKSINEEEXXXXXXXXXXXXXXXXXRA----------------------------PRRRV--------QQATDATP------VEGDGDSANDKGAAAKADPAGHTYDKGYSKWAKFDVDAALREADED----------STSXXXXXXXXXXXXXXXLSSKAVVVEETE---------PAAKASATTKSR--------EELEREDGNAHYQRGDYVAAIKCYTRCLGYNPHNAVVLSNRAMAHLKNREFGKAEEDCNLALKIDPSHLKSLSRRGTARNSLGKHRLALLDFERAAELDPKSRQIQTQIASTRELIRTAIKRAPKRTQFKIE 294
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: A0A6A4EVA2_9STRA (RPAP3_C domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EVA2_9STRA) HSP 1 Score: 168 bits (426), Expect = 7.520e-41 Identity = 127/344 (36.92%), Postives = 173/344 (50.29%), Query Frame = 1
Query: 64 VQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPK 1095
VQHQIR NA +Q+Y +DL +WEKSI K+D +RA T P ++G P P + +G N+ ADG VN GK S HTYDKGY +W KFD+DAAL+ D++ + K +S ++S L+ P P+ VA +S S + E+ E+E GN + +GD+ A+KSYTRCLG N ++++ SNRAMA LK +EF AE D AL+ DP HVKS RR ARN+LGKHR AL D Q AA +DP S+Q++ + T E ++T ++RAPK
Sbjct: 14 VQHQIRANASQLQDYFSDLYAWEKSIGKEDS-------------ARKRAAKTT----------KKPATAGATPPP----RGARGNGVGRNNEAADG-----VN-----------GKKPDS-----HTYDKGYNRWEKFDVDAALKEADED----ASTKTKSG--------------------------AASPPLQSSPVPRRVVA------ASPSTKSREELEKEGGNAHYKRGDYVAAIKSYTRCLGYNPQNAVVLSNRAMAYLKNREFANAEDDCTLALKADPLHVKSYSRRGTARNSLGKHRLALLDFQQAATLDPKSRQIQTQVQSTRELIRTAIKRAPK 273
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: D0MU02_PHYIT (RNA polymerase II-associated protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MU02_PHYIT) HSP 1 Score: 166 bits (421), Expect = 1.840e-40 Identity = 122/347 (35.16%), Postives = 170/347 (48.99%), Query Frame = 1
Query: 64 VQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTS---TSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPK 1095
+QHQIR NA +Q+Y +DL +WEKSI K+D R + SS TPP PP P + G G++ ++ + S HTYDKGY +W KFD+D AL+ D+E + +K+ P+ +V S S APT+ TS SS + + E+ E+E+GN + +GD+ A+KSYTRCLG N ++++ SNRAMA LK +E+ AE D ALR DP H KS RR ARN+LGKHR AL D Q AA +DP S+Q++K L T E ++T ++R+ K
Sbjct: 7 MQHQIRANASQLQDYFSDLYAWEKSIDKEDSMRKRATKTAKSSA----------TPPAAPP------------------------------------PRVATTV--GVGSSDENARTVSLKKLDAHTYDKGYKRWEKFDVDTALKEADEEGDCKQKNKQ----------------------PSALVQPSGS-------------APTAMAKTSVSSTTTKSREELEKEEGNAHYKRGDYVAAIKSYTRCLGYNPQNAVVLSNRAMAYLKNREYANAEDDCSLALRADPAHAKSCTRRGTARNSLGKHRLALLDFQRAATLDPKSRQIQKQLQSTRELIRTAIKRSSK 270
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: A0A329RPX3_9STRA (RPAP3_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RPX3_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.260e-39 Identity = 121/354 (34.18%), Postives = 172/354 (48.59%), Query Frame = 1
Query: 34 KDGPGAAAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPK 1095
K+ ++ VQHQIR NA +Q+Y +DL +WE +I K++ R + SS+ A P P + G G+ G+ A + HTYDKGY +W KFD+DAAL+ D EE G+ K + + + + S S LR VA TS + +S + + E+ E+E+GN + +GD+ A+KSYTRCLG N ++++ SNRAMA LK +EF AE D AL+ DP HVKS RR ARN+LGKHR AL D Q AA +DP S+Q++ L T E ++T ++R+PK
Sbjct: 22 KEDKTSSVVEVQHQIRANASQLQDYFSDLYAWEMTIDKENSARKRATKTAKSSVAANAAPP----------------------------------------------PRVATIV--GVGSNGEELYAGNEKKLDEHTYDKGYKRWDKFDVDAALKEAD--EEAGIRQK------------------SEQASASASEQSSGSAPLR--------VATTSKASTSSTTKSREELEKEEGNAHYKRGDYVAAIKSYTRCLGYNPQNAVVLSNRAMAYLKNREFANAEDDCTLALKADPTHVKSYSRRGTARNSLGKHRLALLDFQHAATLDPKSRQIQTQLQSTRELIRTAIKRSPK 299
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: A0A081B1U1_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A081B1U1_PHYPR) HSP 1 Score: 159 bits (403), Expect = 7.740e-39 Identity = 118/348 (33.91%), Postives = 167/348 (47.99%), Query Frame = 1
Query: 52 AAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPK 1095
+ VQHQIR NA +Q+Y +DL +WEK+I K+D R A + S P T T + V S + +KL A HTYDKGY +W KFD+DAAL+ D++E +K++S+ G R+T + + +S+ ++++ +LEKEE GN + +GD+ A+KSYTRCLG N ++++ SNRAMA LK +EF AE D AL+ DP HVKS RR ARNALGKHR AL D AA +DP S+Q++ L T ++T ++R+PK
Sbjct: 8 SVVEVQHQIRANASQLQDYFSDLYAWEKTIHKEDSARKRAAKTAKSPTAIAAPPPRTAT--------IIGVDSNGEKVSTANEKKLDA-----------------------------------------HTYDKGYKRWEKFDVDAALKEADEDEGNKRQNKQQSASVQA------SGTGPSRVTATSNIPAAST--------------------TTKTREELEKEE---GNAHYKRGDYVAAIKSYTRCLGYNPQNAVVLSNRAMAYLKNREFANAEDDCTLALKSDPAHVKSYSRRGTARNALGKHRLALLDFHRAAMLDPKSRQIQTQLQSTRNVIRTAIKRSPK 277
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: A0A8K1FBG6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBG6_PYTOL) HSP 1 Score: 161 bits (407), Expect = 1.690e-38 Identity = 124/352 (35.23%), Postives = 173/352 (49.15%), Query Frame = 1
Query: 52 AAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESS---SMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVA-PTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPK 1095
+ +VQ QIR NA ++Q+Y +DL +WEK+I+KK++ AM++ + G + A PI P + PV PT+K A HTYDKGY KW KFD+DAAL+ D + + Q T T + P K VA P S ++S D+E+EE GN + +GD+ A+KSYTRCLG NS++++ SNRAMA LK +E+ KAE+D AL++D HVKS RR ARNALGKHR AL D + A E+DP SKQ+ ++ T E+++T ++RAPK
Sbjct: 16 SVLQVQQQIRANASELQDYFSDLYAWEKTIQKKEEATKSTAMTKQNVPLPRGQKTAT--VSLTPISAPEAIAPVEG--------PTKKADA-----------------------------------------HTYDKGYKKWDKFDVDAALQEADGDHS-------------------AEKQSAQAETTTTSL------------PTKKVVAKPKIGSVPTKSREDIEREE---GNEHYKRGDYVAAIKSYTRCLGFNSQNAIVLSNRAMAYLKNREYKKAENDCTLALKIDSAHVKSYSRRGTARNALGKHRLALLDFERARELDPKSKQLLTQIASTKESMRTAIKRAPK 282
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: W2RGZ7_PHYPN (RPAP3_C domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2RGZ7_PHYPN) HSP 1 Score: 159 bits (403), Expect = 7.570e-38 Identity = 118/348 (33.91%), Postives = 167/348 (47.99%), Query Frame = 1
Query: 52 AAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPK 1095
+ VQHQIR NA +Q+Y +DL +WEK+I K+D R A + S P T T + V S + +KL A HTYDKGY +W KFD+DAAL+ D++E +K++S+ G R+T + + +S+ ++++ +LEKEE GN + +GD+ A+KSYTRCLG N ++++ SNRAMA LK +EF AE D AL+ DP HVKS RR ARNALGKHR AL D AA +DP S+Q++ L T ++T ++R+PK
Sbjct: 8 SVVEVQHQIRANASQLQDYFSDLYAWEKAIHKEDSARKRAAKTAKSPTAIAAPPPRTAT--------IIGVDSNGEKVSTANEKKLDA-----------------------------------------HTYDKGYKRWEKFDVDAALKEADEDEGNKRQNKQQSASVQA------SGTGPSRVTATSNIPAAST--------------------TTKTREELEKEE---GNAHYKRGDYVAAIKSYTRCLGYNPQNAVVLSNRAMAYLKNREFANAEDDCTLALKSDPAHVKSYSRRGTARNALGKHRLALLDFHRAAMLDPKSRQIQTQLQSTRNVIRTAIKRSPK 277
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: A0A5D6XFC9_9STRA (RPAP3_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFC9_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.070e-36 Identity = 117/347 (33.72%), Postives = 160/347 (46.11%), Query Frame = 1
Query: 52 AAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAP 1092
AA QHQIR NA ++Q+Y +DL SWEK++++ ++ + + S G A PV S P P A HTYD+GY KWAKFD++AAL+ D E+G K + V SSSR E+ ERE+GN + +GDF A+K YTRCLG +S++++ SNRAMA LK +EF KAE D + A++VDP H+KSL RRA ARNALGKHR AL D + AA +DP S+Q++ ++ T E L+ ++RAP
Sbjct: 8 AALETQHQIRANAAELQDYFSDLYSWEKTVERDEEARRQAKAARQPSAGGATAA--------------APVRSAPTP--------------------------------------------------AAHTYDRGYYKWAKFDVEAALKEAD---EDGHVTK-------------------------SAVAASSSR---------------------------EEIEREEGNAHYKRGDFVAAIKCYTRCLGYDSRNAVVLSNRAMAYLKNREFAKAEDDCNLAIQVDPSHLKSLSRRATARNALGKHRLALLDFERAAALDPKSRQLQNQIASTKELLRAAIKRAP 235
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Match: H3GE50_PHYRM (RPAP3_C domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GE50_PHYRM) HSP 1 Score: 150 bits (378), Expect = 1.280e-34 Identity = 116/344 (33.72%), Postives = 158/344 (45.93%), Query Frame = 1
Query: 64 VQHQIRRNAQDMQEYLTDLSSWEKSIKKKDKQLARKAMSESSSMGNRRAIPDTGTPPIRPPGSTVPVSSGPAPQPSQPTQKLSAKSLGCRNDRADGRPHITVNAANGDGATGDSGKAKSSMSAAGHTYDKGYGKWAKFDIDAALRSVDQEEEEGVNDKRRSSXXXXXXXXXXKNQGTPRLTPATMVDRSSSRGLRRPPPPKHTVAPTSTSRSSQSPRDLEKEEREKGNTKFGQGDFEGAVKSYTRCLGMNSKSSLAFSNRAMANLKLKEFGKAESDADAALRVDPRHVKSLQRRAAARNALGKHRAALGDLQTAAEIDPTSKQVRKDLSKTLETLKTVVRRAPK 1095
VQHQIR NA +Q+Y +DL +WEKSI K+D +RA T + PP T V V N ++G+ G A HTYDKGY +W KFD+DAALR D G P +V+ S + + P+ + E+ E+E+GN + +GD+ AVKSYTRCLG N ++++ SNRAMA LK +EF AE D AL+ +P HVKS RR ARN+LGKHR AL D AA +DP S+Q++ L T + ++T ++R+PK
Sbjct: 9 VQHQIRSNASQLQDYFSDLYAWEKSIDKEDS-------------ARKRAARTTKSLDATPPPRTATV----------------------------------VGVGNNSESSGE-GDATDGKQPGAHTYDKGYKRWEKFDVDAALREAD---------------------------GGGSAVP--IVEDSPASSV-----PRRVXXXXXXXXXXXXTKSREELEKEEGNAHYKRGDYVAAVKSYTRCLGYNPQNAVVLSNRAMAYLKNREFANAEDDCTLALKANPTHVKSFSRRGTARNSLGKHRLALLDFHRAAMLDPKSRQIQTQLQSTRDLIRTAIKRSPK 270 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.18031.1 >prot_Ecto-sp6_S_contig9.18031.1 ID=prot_Ecto-sp6_S_contig9.18031.1|Name=mRNA_Ecto-sp6_S_contig9.18031.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=770bp MTGKGVHDAYGKDGPGAAAFRVQHQIRRNAQDMQEYLTDLSSWEKSIKKKback to top mRNA from alignment at Ecto-sp6_S_contig9:430587..437846+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.18031.1 ID=mRNA_Ecto-sp6_S_contig9.18031.1|Name=mRNA_Ecto-sp6_S_contig9.18031.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7260bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:430587..437846+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:430587..437846+ >mRNA_Ecto-sp6_S_contig9.18031.1 ID=mRNA_Ecto-sp6_S_contig9.18031.1|Name=mRNA_Ecto-sp6_S_contig9.18031.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2310bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:430587..437846+ (Ectocarpus species6 EcLAC_371)back to top |