mRNA_Ecto-sp6_S_contig9.18004.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.18004.1
Unique NamemRNA_Ecto-sp6_S_contig9.18004.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.18004.1 vs. uniprot
Match: A0A6H5L869_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L869_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.220e-32
Identity = 86/147 (58.50%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    4 RNGEAKRGRNVAAPQQGDGGGRRACAST-KVRRKIQGRMGGHADASAGAGKKKNMRPATERATTTXXXXXXXXXXXXXXXXXXXEDREAKKHANSAKPKLTMKIATSCWKRRKVEYERDEENGRQPRVASSTLKATTVGRKRRIFES 441
            RNG+AKRGR+VAAPQQ D GGRR+CAST K RRKIQGR  GHADASAGAGKKKNM PATERA TT                   EDR AKKH +SA                        ENGRQPR+ASSTLKAT   RKRRIFES
Sbjct:  452 RNGDAKRGRSVAAPQQEDVGGRRSCASTGKARRKIQGRARGHADASAGAGKKKNMGPATERAATTIATTKVTLTERERRVRSESEDRGAKKHVSSA------------------------ENGRQPRIASSTLKATISRRKRRIFES 574
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.18004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L869_9PHAE1.220e-3258.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:184830..185271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size443
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350517.092574-CDS-Ecto-sp6_S_contig9:184829..1852701682350517.092574-CDS-Ecto-sp6_S_contig9:184829..185270Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 184830..185270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.18004.1prot_Ecto-sp6_S_contig9.18004.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 184830..185270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.18004.1

>prot_Ecto-sp6_S_contig9.18004.1 ID=prot_Ecto-sp6_S_contig9.18004.1|Name=mRNA_Ecto-sp6_S_contig9.18004.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=147bp
KRNGEAKRGRNVAAPQQGDGGGRRACASTKVRRKIQGRMGGHADASAGAG
KKKNMRPATERATTTPATTKVTPTDRERRVRSESEDREAKKHANSAKPKL
TMKIATSCWKRRKVEYERDEENGRQPRVASSTLKATTVGRKRRIFES
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mRNA from alignment at Ecto-sp6_S_contig9:184830..185271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.18004.1 ID=mRNA_Ecto-sp6_S_contig9.18004.1|Name=mRNA_Ecto-sp6_S_contig9.18004.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=442bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:184830..185271+ (Ectocarpus species6 EcLAC_371)
AAACGCAACGGAGAAGCGAAGCGGGGTAGGAATGTGGCGGCACCACAACA
AGGGGACGGTGGCGGAAGACGTGCCTGTGCTTCGACGAAAGTACGGCGGA
AGATTCAAGGGCGGATGGGAGGCCACGCGGACGCTTCTGCCGGCGCCGGA
AAGAAGAAAAACATGAGACCGGCCACCGAGAGAGCTACAACTACCCCAGC
GACGACGAAGGTGACCCCCACAGATCGTGAGCGACGGGTACGATCGGAGT
CTGAAGACCGGGAGGCCAAGAAACACGCCAACTCGGCGAAACCGAAGTTG
ACGATGAAGATAGCGACCTCGTGTTGGAAGCGACGGAAAGTTGAATATGA
ACGGGACGAAGAGAATGGCCGTCAACCGCGGGTTGCAAGCTCAACGCTGA
AGGCGACAACCGTAGGTCGGAAGAGACGAATATTTGAATCTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:184830..185271+

>mRNA_Ecto-sp6_S_contig9.18004.1 ID=mRNA_Ecto-sp6_S_contig9.18004.1|Name=mRNA_Ecto-sp6_S_contig9.18004.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:184830..185271+ (Ectocarpus species6 EcLAC_371)
AAACGCAACGGAGAAGCGAAGCGGGGTAGGAATGTGGCGGCACCACAACA
AGGGGACGGTGGCGGAAGACGTGCCTGTGCTTCGACGAAAGTACGGCGGA
AGATTCAAGGGCGGATGGGAGGCCACGCGGACGCTTCTGCCGGCGCCGGA
AAGAAGAAAAACATGAGACCGGCCACCGAGAGAGCTACAACTACCCCAGC
GACGACGAAGGTGACCCCCACAGATCGTGAGCGACGGGTACGATCGGAGT
CTGAAGACCGGGAGGCCAAGAAACACGCCAACTCGGCGAAACCGAAGTTG
ACGATGAAGATAGCGACCTCGTGTTGGAAGCGACGGAAAGTTGAATATGA
ACGGGACGAAGAGAATGGCCGTCAACCGCGGGTTGCAAGCTCAACGCTGA
AGGCGACAACCGTAGGTCGGAAGAGACGAATATTTGAATCT
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