mRNA_Ecto-sp6_S_contig9.17999.1 (mRNA) Ectocarpus species6 EcLAC_371
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE) HSP 1 Score: 124 bits (311), Expect = 8.170e-27 Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = 1
Query: 784 IDTEEVPREGLPDT-TEDPVHDNNINCLRQAFDRWLPHAWVTAKWLWGLVMALFFGAVVVGIVEEKDVLWKSCLAAAGLLLASAIVASVFAYRFGTHGPCS--EQGQTGGQHETPVEVIAAF 1140
IDT + P EGL D TEDP NC+R+AF WLPHAW TAKWL+GL + LF AVV GIVE+K+ LWKS L +L+ ++VASVFAY C EQGQ+GGQH TP +V+AAF
Sbjct: 682 IDTGKDPFEGLSDEDTEDPEETVTCNCVREAFGHWLPHAWRTAKWLFGLAVVLFTTAVVAGIVEDKETLWKSSLGVCCVLMVFSVVASVFAY-------CGDREQGQSGGQHGTPEDVVAAF 796
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 7.290e-13 Identity = 152/216 (70.37%), Postives = 170/216 (78.70%), Query Frame = 1
Query: 4 NLSYCEIADADAEGGDLALCLDAAGRESITELNLTFSEITTLPEGIFQNLTALEALTLFXXXXXXXXXXXXXXXXXXXXXLLDDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGNPLECLPTTTLPELDDDDLSDADRVIVDAYGIECGCSIPGVNDNVCGAQVCTAGPVGYTC 651
+LS C +AD D + GDLA CLDAAGRES+ L+L +++TTLP+G+F +LT++E L + XXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TTL DDD AD + VD YG ECGC++ GV NVCGA+ CT GPVGYTC
Sbjct: 83 DLSECLVADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTSMETLHIDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETTLAAAADDD---ADGLHVDTYGTECGCAVTGVT-NVCGAETCTPGPVGYTC 294
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 6.870e-11 Identity = 124/217 (57.14%), Postives = 142/217 (65.44%), Query Frame = 1
Query: 4 NLSYCEIADADAEGGDLALCLDAAGRESITELNLTFSEITTLPEGIFQNLTALEALTLFXXXXXXXXXXXXXXXXXXXXXLLDDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGNPLECLPTTTLPELDDDDLSDADRVIVDAYGIECGCSIPGVNDNVCGAQVCTAGPVGYTCA 654
+LS C IAD D + GDLA CLDAAGRES+ L+L +++TTLP+G+F +LTA+E L + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + LE + DDD AD + VD YG ECGC++ GV NVCGA+ CT GPVGY CA
Sbjct: 75 DLSECLIADDDVDSGDLAACLDAAGRESVIFLDLGRNDLTTLPDGVFLDLTAMETLHI----------------------------------DVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSALEIMAAAA-----DDD---ADGLHVDTYGTECGCAVTGVT-NVCGAETCTPGPVGYICA 248
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: A0A6H5KAC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC1_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 8.870e-9 Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 4 NLSYCEIADADAEGGDLALCLDAAGRESITELNLTFSEITTLPEGIFQNLTALEAL 171
+L C IAD D + DLA CL+AAG E+IT L L+ +E+TTLPEGIF LTALE L
Sbjct: 31 SLGLCGIADTDFD--DLASCLEAAGPETITTLYLSVNELTTLPEGIFGGLTALETL 84
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 5.610e-8 Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 1 RNLSYCEIADADAEGGDLALCLDAAGRESITELNLTFSEITTLPEGIFQNLTALEA 168
R L+ C I D D +GGDLA CLD AGRE + EL L+ + +TTLP GIF+ LT L+A
Sbjct: 81 RRLNDCGITDEDVDGGDLASCLDNAGRELVVELWLSSNALTTLPAGIFEGLTVLDA 136
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 1.800e-7 Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 502 LPELDDDDLSDADRV--IVDAYGIECGCSIPGVNDNVCGAQVCTAGPVGYTCAT 657
L ELDDD +S D V +D YG ECGCSI GV DNVCG ++CT GP GYTC T
Sbjct: 306 LGELDDDTISYNDIVGLRIDPYGEECGCSILGVTDNVCGEEICTPGPQGYTCDT 359
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: D8LH32_ECTSI (Leucine rich repeat tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH32_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 2.350e-7 Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 493 TTTLPELDDDDLSDADRVIVDAYGIECGCSIPGVNDNVCGAQVCTAGPVGYTCA 654
+TTL E+DDD +D + VDAYG ECGCSI GV DNVCG + CT G GYTCA
Sbjct: 194 STTLVEVDDDV---SDGLHVDAYGDECGCSITGVVDNVCGEETCTPGDEGYTCA 244
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: D7FRQ5_ECTSI (Similar to CG1848-PA, isoform A/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ5_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 2.960e-7 Identity = 51/124 (41.13%), Postives = 61/124 (49.19%), Query Frame = 1
Query: 490 PTTTLPELDDDDLSDADRVIVDAYGIECGCSIPGVNDNVCGAQVCTAGPVGYTCATS---------------------SGQGSPSDAAAIIAGVLS---AAAVVLVALAVCLTRRKIAKRNAID 789
P+TTL E+DD + VD YG ECGCSI GV DNVCG + CT G GYTCA + S GS S+ A AGV+ A A+ L AL L RR++AK D
Sbjct: 138 PSTTLVEVDDYASFYEIGLHVDPYGDECGCSIEGVIDNVCGQEACTPGDEGYTCAVTLAPAPAPALGTTAPESTPHPTSVPGSSSEGDASTAGVVVGVVAGALALAALGFFLRRRRVAKSTGPD 261
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: A0A6H5K2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E6_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 3.710e-7 Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 7 LSYCEIADADAEGGDLALCLDAAGRESITELNLTFSEITTLPEGIFQNLTALEAL 171
L C DAD + DLA CL+AAG E+IT L L +E+TTLPEGIF LTALE L
Sbjct: 43 LGLCGTTDADFD--DLASCLEAAGPETITTLYLYRNELTTLPEGIFGGLTALETL 95
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Match: A0A6H5JSZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ2_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 9.910e-7 Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 4 NLSYCEIADADAEGGDLALCLDAAGRESITELNLTFSEITTLPEGIFQNLTALE 165
+L C I DAD + DLA CL+AAG E+IT L L+ +E+TTLPEGIF LTAL+
Sbjct: 42 SLGLCGITDADFD--DLASCLEAAGPETITTLYLSHNELTTLPEGIFGGLTALQ 93 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.17999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig9.17999.1 >prot_Ecto-sp6_S_contig9.17999.1 ID=prot_Ecto-sp6_S_contig9.17999.1|Name=mRNA_Ecto-sp6_S_contig9.17999.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=382bp RNLSYCEIADADAEGGDLALCLDAAGRESITELNLTFSEITTLPEGIFQNback to top mRNA from alignment at Ecto-sp6_S_contig9:146991..152234- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig9.17999.1 ID=mRNA_Ecto-sp6_S_contig9.17999.1|Name=mRNA_Ecto-sp6_S_contig9.17999.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5244bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:146991..152234- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:146991..152234- >mRNA_Ecto-sp6_S_contig9.17999.1 ID=mRNA_Ecto-sp6_S_contig9.17999.1|Name=mRNA_Ecto-sp6_S_contig9.17999.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:146991..152234- (Ectocarpus species6 EcLAC_371)back to top |