mRNA_Ecto-sp6_S_contig9.17997.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig9.17997.1
Unique NamemRNA_Ecto-sp6_S_contig9.17997.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig9.17997.1 vs. uniprot
Match: A0A6H5LR56_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LR56_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 9.690e-43
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:   21 MRRSVSSMLQNRSSFARIGIRRGSKTTTTSQRQVDVGQVMWSPSQQRIRDSRMDAFARLAGERSGRDLRSWPDLHRWSVSEVG 269
            MR SVSSM QNRSSFARIGIRRGSKTTTTSQRQVDVGQVMWSPSQQRIRDSRMDAFARLAGERSGRDLRSWPDLHRWSVSEVG
Sbjct:    1 MRGSVSSMFQNRSSFARIGIRRGSKTTTTSQRQVDVGQVMWSPSQQRIRDSRMDAFARLAGERSGRDLRSWPDLHRWSVSEVG 83
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BLAST of mRNA_Ecto-sp6_S_contig9.17997.1 vs. uniprot
Match: D7G8I3_ECTSI (Acetoacetate--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I3_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.120e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 3 
Query:  177 MDAFARLAGERSGRDLRSWPDLHRWSVSEVG 269
            MDAFARLAGERSGRDLRSWPDLHRWSVSEVG
Sbjct:    1 MDAFARLAGERSGRDLRSWPDLHRWSVSEVG 31
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BLAST of mRNA_Ecto-sp6_S_contig9.17997.1 vs. uniprot
Match: UPI00196230E0 (acetoacetate--CoA ligase n=1 Tax=Nakamurella flavida TaxID=363630 RepID=UPI00196230E0)

HSP 1 Score: 55.1 bits (131), Expect = 8.510e-7
Identity = 23/48 (47.92%), Postives = 36/48 (75.00%), Query Frame = 3 
Query:  126 VGQVMWSPSQQRIRDSRMDAFARLAGERSGRDLRSWPDLHRWSVSEVG 269
            V +V+W+P  +R+  + + AFARLAG+R+GRDL  + DL +WSV ++G
Sbjct:    7 VPEVLWTPRPERVEGAAITAFARLAGDRAGRDLTGYDDLWQWSVDDLG 54
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BLAST of mRNA_Ecto-sp6_S_contig9.17997.1 vs. uniprot
Match: UPI000BA3E135 (acetoacetate--CoA ligase n=1 Tax=Pseudomonas sp. Irchel 3E20 TaxID=2008983 RepID=UPI000BA3E135)

HSP 1 Score: 52.4 bits (124), Expect = 7.570e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 3 
Query:  135 VMWSPSQQRIRDSRMDAFARLAGERSGRDLRSWPDLHRWSVSE 263
            ++W PS +RIR SR+ AFARL  +R G  LR +P LH+WS+ +
Sbjct:    4 ILWQPSAERIRASRLHAFARLLHDRHGIALRDYPSLHQWSIDQ 46
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BLAST of mRNA_Ecto-sp6_S_contig9.17997.1 vs. uniprot
Match: UPI000EAD2897 (acetoacetate--CoA ligase n=1 Tax=Pseudomonas urumqiensis TaxID=638269 RepID=UPI000EAD2897)

HSP 1 Score: 51.2 bits (121), Expect = 1.930e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 3 
Query:  132 QVMWSPSQQRIRDSRMDAFARLAGERSGRDLRSWPDLHRWSVSE 263
            Q +W+PS  RI D+RMDAF R   ER   DL  +P LH+WS+ +
Sbjct:    3 QPLWTPSADRIADTRMDAFRRFVNERHTLDLADYPALHQWSIDQ 46
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BLAST of mRNA_Ecto-sp6_S_contig9.17997.1 vs. uniprot
Match: A0A2H0A7A7_9DELT (Acetoacetate--CoA ligase (Fragment) n=1 Tax=Desulfobacterales bacterium CG23_combo_of_CG06-09_8_20_14_all_51_8 TaxID=1973983 RepID=A0A2H0A7A7_9DELT)

HSP 1 Score: 48.9 bits (115), Expect = 7.960e-5
Identity = 19/47 (40.43%), Postives = 33/47 (70.21%), Query Frame = 3 
Query:  126 VGQVMWSPSQQRIRDSRMDAFARLAGERSGRDLRSWPDLHRWSVSEV 266
            + +++W PS +RIR +RM  F     +R G +L+S+PDL++WSV+ +
Sbjct:    1 MSRILWQPSAERIRQTRMVRFIGFVNDRFGLNLKSYPDLYQWSVTRI 47
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BLAST of mRNA_Ecto-sp6_S_contig9.17997.1 vs. uniprot
Match: A0A117T2V9_KOCRH (Acetoacetate--CoA ligase n=13 Tax=Kocuria TaxID=57493 RepID=A0A117T2V9_KOCRH)

HSP 1 Score: 49.3 bits (116), Expect = 9.230e-5
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 3 
Query:  135 VMWSPSQQRIRDSRMDAFARLAGERSGRDLRSWPDLHRWSVSEVG 269
            ++W PS + +RDSRM AFAR   E  G  L  +  LH WSVS++G
Sbjct:   12 LLWEPSPEAVRDSRMAAFARWVEESRGLSLPGFTSLHEWSVSDLG 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig9.17997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5LR56_9PHAE9.690e-4397.59AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
D7G8I3_ECTSI6.120e-12100.00Acetoacetate--CoA ligase n=1 Tax=Ectocarpus silicu... [more]
UPI00196230E08.510e-747.92acetoacetate--CoA ligase n=1 Tax=Nakamurella flavi... [more]
UPI000BA3E1357.570e-651.16acetoacetate--CoA ligase n=1 Tax=Pseudomonas sp. I... [more]
UPI000EAD28971.930e-550.00acetoacetate--CoA ligase n=1 Tax=Pseudomonas urumq... [more]
A0A2H0A7A7_9DELT7.960e-540.43Acetoacetate--CoA ligase (Fragment) n=1 Tax=Desulf... [more]
A0A117T2V9_KOCRH9.230e-548.89Acetoacetate--CoA ligase n=13 Tax=Kocuria TaxID=57... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig9contigEcto-sp6_S_contig9:130279..132190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score69.7
Seed ortholog evalue7.2e-10
Seed eggNOG ortholog2880.D7G8I3
Model size270
KEGG rclassRC00004,RC00014
KEGG koko:K01907
KEGG ReactionR01357
KEGG Pathwayko00280,ko00650,map00280,map00650
Hectar predicted targeting categorymitochondrion
Exons2
EggNOG free text desc.synthetase
EggNOG OGsCOG0365@1,KOG1175@2759
EC6.2.1.16
Cds size249
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350516.5966065-UTR-Ecto-sp6_S_contig9:130278..1302981682350516.5966065-UTR-Ecto-sp6_S_contig9:130278..130298Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig9 130279..130298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350516.60981-CDS-Ecto-sp6_S_contig9:130298..1305071682350516.60981-CDS-Ecto-sp6_S_contig9:130298..130507Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 130299..130507 +
1682350516.6192904-CDS-Ecto-sp6_S_contig9:132150..1321901682350516.6192904-CDS-Ecto-sp6_S_contig9:132150..132190Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig9 132151..132190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig9.17997.1prot_Ecto-sp6_S_contig9.17997.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig9 130299..132190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig9.17997.1

>prot_Ecto-sp6_S_contig9.17997.1 ID=prot_Ecto-sp6_S_contig9.17997.1|Name=mRNA_Ecto-sp6_S_contig9.17997.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=83bp
MRRSVSSMLQNRSSFARIGIRRGSKTTTTSQRQVDVGQVMWSPSQQRIRD
SRMDAFARLAGERSGRDLRSWPDLHRWSVSEVG
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mRNA from alignment at Ecto-sp6_S_contig9:130279..132190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig9.17997.1 ID=mRNA_Ecto-sp6_S_contig9.17997.1|Name=mRNA_Ecto-sp6_S_contig9.17997.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1912bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:130279..132190+ (Ectocarpus species6 EcLAC_371)
CCTTCACTTCTGGAGAAACTATGAGACGGTCTGTTTCGTCCATGCTTCAG
AACAGGTCTTCCTTCGCTCGAATAGGCATACGGCGAGGATCAAAGACAAC
CACCACATCACAACGTCAAGTTGATGTCGGTCAAGTGATGTGGTCTCCCT
CTCAACAGCGGATCAGGGACAGCCGCATGGATGCGTTCGCTAGGCTGGCG
GGCGAGCGGAGCGGACGAGACCTTAGAAGGTCGGGTGAAGACGGGGACGA
CGGGGTAAATAAGATATAGTCTAGTCCAGTAATTGGGTCGCAGGATATAA
TCAGCATACTTTGGTTGTGCGGCAAGCCATGCCACAACAACAGTCGCAGT
AGTAGCAGTCAATCTCTTTTTCTCCATTTCGTTAGACGCCAACCTACGGA
TGGTACTTGCCGCAGTACTTATGGATATCAACCGCCAGGGCGCGTTTAAT
CTCATCTTGTTGACAAGTTGTACCCTGCGCCAGGATATAGATATCTTTCT
CGTGCATCTGAACCGGTACGTGCACCGAATCATGTTATTGGATCTGCTAT
GTATGATAGAAGAAGGGTTCCGAGCTCCGGGTACGGTGTAGCTTGTAGCC
GGCTACGGAGGGCGGGCAAGTTTTCTCCGTTGATCTTTTCGCGCAGAGAG
AGGGCCCAGAAAGAGAGTGAGCATGGGGGGTGCCACACGTGGTCCGTCCG
CCCGCTCACGCCAGCAAGGGACATATATACGAGTAGAAGATCTGTGTTTT
CTCGGAACGCTTCTAAGGATCGGTTCTTCCAACACTTTGAATAAGTCCGT
CCGCGTGGATCCTGCGTCTTTGCATCTTACTCTGAAGAACATCGTTACCT
GCCACGATAGCACAAGTGCCATCGTTAAAATGCTCCAGCATCCTGTGCAT
CGTTGAACCCACAGCCAGTTCCGATAAAAGCCAGTAGAAAAATTGATGGG
CGTAGGCGTTGTTCTGCCCTGCTCCTCCCCGTTCGACCGGTTATTGCCAC
CACCAGAGCGAGCGAAGCGAACTGAACCTTAAAGTAGCTTTACAGAGCGA
TTGCTTACACCCGACACCTGATTGGCTGGGCGGATATGTCCCACACACCT
ACACGACCTTTGGTCACGTTCCATAGGCACTTTTAGACCGGTCTCAGGAC
CAAGAGGGCGTTCGTGTGACCTCTCTCACGAACTACAGCAGTAGCTTAAG
ATGCATGAGATGGATGTCTACTGTCCGCTGTGCACCACACGAATCTCGCC
GTGCGAATTAAATTATTCACATCTGGAAGCGGCACCAGATGTAGAGGTTG
CTGGTGGCAACATGCGACGAGCACCGGTGTACACCGGTTGGTGGTGTAGA
CAACAAAGGCTTGATCGAAACGGCAGGCTGACAAATTCCAGCTCGTTGTC
CCAAGCCTCGCAGCGGTGTGTGTAGATGGTTTGCTCCATTCTCATCGAGT
GGTACTGCAGAAACAAAGGCACGTTATCATGATTTCGCAGACAAGAAACA
CAGACAAGACCTTTATCTCGGTTCGGGGTTGTCCTCTCGACGACTGCGGC
ACATAAGTGTGTCATCCTCAACCCATGGTGTGCCTGGACGGATATCTCGC
GATCCGCGTACAGGGGCATGGGGGATCGTCCGGTGGTCGGTGTGATCGGC
TGTATCTCGGCTTGGCGCTAACCAGGACGAACTGCATGAGTGTGCTGATT
GGTGTTGGGTTGCAGCCTTTTTCAGCCGTCATTGTGATATCGAAAGTAAT
GGACCAAACGCCGTTTTTCCGGAAAAAAATACTCTGAACGCTTAGTTGGA
AGTTAACCCCCCGATTTCCGTTGTCCTATGCTCTCTATCCCCGTTCCGCA
ACGTGCCGATTCACCAAATTAGCTGGCCTGACCTCCATCGATGGTCCGTT
TCCGAGGTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig9:130279..132190+

>mRNA_Ecto-sp6_S_contig9.17997.1 ID=mRNA_Ecto-sp6_S_contig9.17997.1|Name=mRNA_Ecto-sp6_S_contig9.17997.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp6_S_contig9:130279..132190+ (Ectocarpus species6 EcLAC_371)
ATGAGACGGTCTGTTTCGTCCATGCTTCAGAACAGGTCTTCCTTCGCTCG
AATAGGCATACGGCGAGGATCAAAGACAACCACCACATCACAACGTCAAG
TTGATGTCGGTCAAGTGATGTGGTCTCCCTCTCAACAGCGGATCAGGGAC
AGCCGCATGGATGCGTTCGCTAGGCTGGCGGGCGAGCGGAGCGGACGAGA
CCTTAGAAGCTGGCCTGACCTCCATCGATGGTCCGTTTCCGAGGTGGGG
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