mRNA_Ecto-sp6_S_contig89.17915.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig89.17915.1
Unique NamemRNA_Ecto-sp6_S_contig89.17915.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig89.17915.1 vs. uniprot
Match: D8LKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG8_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 7.840e-147
Identity = 210/248 (84.68%), Postives = 224/248 (90.32%), Query Frame = 2
Query:  128 MSQDNPTYVPVGGEFDEGRPVALPLHRQRDARGVVPPSRGRRREWWWQPGPVDTVGFCWDLDMGMGLLAAVDLARGILSFASIGYRLAADKSTVVAQKREEEFARDCEGLEEMPYKCERLINSILELTLANDTLVPNVLAAAVLVMLGLIGLRAWWCFDARAAKFNLWLRPLMYLMFAVVMAIQVTKEMSYGRHPEWGAFVFVLLCMVLHMMYLSKATWSYHIFLLKKTSRAIRKAGMVELDATSPTV 871
            M Q NP YV VGGEFDEGRPVALPLHRQRDARGVVPPSRGRR+EWWWQPGPVDTVGFCWDLDMG+GL A  +L  GIL+FASIG+RLAAD STVV Q++EEEFARDCEGLE+MPYKCERLI SILELTLANDTLVPNVLAAAVL+MLG +GLRAWWCFDARAAKFNLWLRPLM+LM AVVMAI+VTKEMSYGRHP W  +VF LL MVL MMY SK  WSYHIFLLKKTSRA R+AGMVELDATSPTV
Sbjct:    1 MPQGNPVYVRVGGEFDEGRPVALPLHRQRDARGVVPPSRGRRKEWWWQPGPVDTVGFCWDLDMGVGLNAVGELVYGILAFASIGHRLAADTSTVVVQEKEEEFARDCEGLEQMPYKCERLIGSILELTLANDTLVPNVLAAAVLLMLGWLGLRAWWCFDARAAKFNLWLRPLMFLMSAVVMAIRVTKEMSYGRHPVWDLYVFWLLLMVLSMMYSSKVMWSYHIFLLKKTSRATREAGMVELDATSPTV 248          
BLAST of mRNA_Ecto-sp6_S_contig89.17915.1 vs. uniprot
Match: D8LNW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW6_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.470e-25
Identity = 79/246 (32.11%), Postives = 120/246 (48.78%), Query Frame = 2
Query:  149 YVPVGGEFDEGRPVALPLHRQRDARGVVPPSRGRRREWWWQPGPVDTVGFCWDLDMGMGLLAAVDL-ARGILSFASIGYRLAADKSTVVAQKREEEFARDCEGLEEMPYKCERLINSILELTLANDTLVPNVLAAAVLVMLGLIGLRAWWCFDARAAKFNLWLRPLMYLMFAVVMAIQVTKEMSYGRHPEWGAFVFVLLCMVLHMMYLSKATWSYHIFLLKKTSRAIRKA----GMVELDATSPTV 871
            YVPVG EFD GRP+   + R     GV       R++WWWQPGPVD+    + L  G+ +LAA+D+   G +    + +         +    E+++A +CE + E    C    + IL L   ND  VP VL   +  + G +GLRA +  DA AA+  LW  P   ++  V + +Q  +   Y     WG  V   +  VL + Y  K  WSY + ++++ +RA   A    G +ELD +  +V
Sbjct:   11 YVPVGSEFDGGRPLGERV-RFNGVGGV-------RKDWWWQPGPVDSXXXXFSLAAGVAVLAALDIIVLGAMRLYYVSFVTGDAGLKQLLAGFEKKYAEECEDVAEASADCLAQASIILSLNKTNDLYVPAVLQGVIAAIFGFVGLRAVFAHDALAARAYLWSWPPRIVLTLVELVMQRIRFERYDMGFLWGFTVVWNIPRVLILAYCLKVAWSYWV-VVRRNNRAAATAADTSGSIELDGSRSSV 247          
BLAST of mRNA_Ecto-sp6_S_contig89.17915.1 vs. uniprot
Match: D8LNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.380e-9
Identity = 62/209 (29.67%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  245 GRRREWWWQPGPVDTVGFCWDLDMGMGLLAAVDL-ARGILSFASIGYRLAADKSTVVA-QKREEEFARDCEGLEEMPYKCERLINSI----LELTLANDTLVPNVLAAAVLVMLGLIGLRAWWCFDARAAKFNLWL-RPLMYLMFAVVMAIQVTKEMSYGRHPEWGAFVFV-LLCMVLHMMYLSKATWSYHIFLLKKTSRAIRKAGMVE 847
            G RR+WWWQPGPVD+  FC  L  G+G+LAA DL   GI S  +   R   +K    A +  +  + +DC+        C +L ++I     E+ L ++  V   + A + ++ G +GL A +  +A +AK  LW+  P  ++       ++   +  YG     G  V +  L  V+  +Y  K  WS+H  L  ++  +   +G VE
Sbjct:   24 GVRRQWWWQPGPVDSCCFCCSLRAGVGILAANDLFLNGIWS--TFYSRSHIEKMLHAAIEILQSVYDKDCKDAPVQTEDCLQLSHNIEQAEFEVELFDNLPVIVYVEAIIAMLAGAVGLFAVFKSNALSAKIYLWMWLPRFFVGLVAKYTLRAVMK-QYGIDNSDGPGVVIGHLVDVVVFLYFVKVAWSFHQRLKARSGNSSSPSGGVE 229          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig89.17915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKG8_ECTSI7.840e-14784.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNW6_ECTSI4.470e-2532.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNW7_ECTSI1.380e-929.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig89contigEcto-sp6_S_contig89:105266..112157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1446
Hectar predicted targeting categoryother localisation
Exons6
Cds size747
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig89.17915.1prot_Ecto-sp6_S_contig89.17915.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig89 105393..111585 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350507.7769454-UTR-Ecto-sp6_S_contig89:105265..1053921682350507.7769454-UTR-Ecto-sp6_S_contig89:105265..105392Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 105266..105392 +
1682350507.8517525-UTR-Ecto-sp6_S_contig89:111585..1121571682350507.8517525-UTR-Ecto-sp6_S_contig89:111585..112157Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig89 111586..112157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350507.7877052-CDS-Ecto-sp6_S_contig89:105392..1055531682350507.7877052-CDS-Ecto-sp6_S_contig89:105392..105553Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 105393..105553 +
1682350507.7984004-CDS-Ecto-sp6_S_contig89:108479..1085081682350507.7984004-CDS-Ecto-sp6_S_contig89:108479..108508Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 108480..108508 +
1682350507.8086298-CDS-Ecto-sp6_S_contig89:109075..1091911682350507.8086298-CDS-Ecto-sp6_S_contig89:109075..109191Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 109076..109191 +
1682350507.8189492-CDS-Ecto-sp6_S_contig89:109914..1100291682350507.8189492-CDS-Ecto-sp6_S_contig89:109914..110029Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 109915..110029 +
1682350507.829515-CDS-Ecto-sp6_S_contig89:110657..1108841682350507.829515-CDS-Ecto-sp6_S_contig89:110657..110884Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 110658..110884 +
1682350507.8413832-CDS-Ecto-sp6_S_contig89:111486..1115851682350507.8413832-CDS-Ecto-sp6_S_contig89:111486..111585Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig89 111487..111585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig89.17915.1

>prot_Ecto-sp6_S_contig89.17915.1 ID=prot_Ecto-sp6_S_contig89.17915.1|Name=mRNA_Ecto-sp6_S_contig89.17915.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=249bp
MSQDNPTYVPVGGEFDEGRPVALPLHRQRDARGVVPPSRGRRREWWWQPG
PVDTVGFCWDLDMGMGLLAAVDLARGILSFASIGYRLAADKSTVVAQKRE
EEFARDCEGLEEMPYKCERLINSILELTLANDTLVPNVLAAAVLVMLGLI
GLRAWWCFDARAAKFNLWLRPLMYLMFAVVMAIQVTKEMSYGRHPEWGAF
VFVLLCMVLHMMYLSKATWSYHIFLLKKTSRAIRKAGMVELDATSPTV*
back to top

mRNA from alignment at Ecto-sp6_S_contig89:105266..112157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig89.17915.1 ID=mRNA_Ecto-sp6_S_contig89.17915.1|Name=mRNA_Ecto-sp6_S_contig89.17915.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6892bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:105266..112157+ (Ectocarpus species6 EcLAC_371)
TCGCATTTTACGACCTACGACGCATGTACTTCGACGTACAGTAGTACACC GGAAGGCCTCGATTCGCTAGACCGGCAGTGTCGAGTTTCAGCACTGAAAC AGATTGGACCTGCGTACAAGTCGTCCCATGTCGCAGGACAACCCAACGTA TGTGCCGGTTGGTGGCGAGTTTGATGAAGGACGCCCGGTGGCCCTTCCGC TTCACCGACAGCGGGATGCGCGAGGAGTCGTGCCTCCGTCGCGGGGAAGG AGGAGGGAGTGGTGGTGGCAGCCTGGTCCTGTCGATACGTGAGTGTTACT GCTGCTGTCGAGGCGTGCCGGATACGACGGTGCTGCTTCCCAGCCTCACA GCTTGCTTCGGAAAACTACTTTCCAGCTGCTGTGCTCCGGAAAAAAGAGA CTGCTACGAAGCATCCGCCCAGTAGATTTACCACGACCGAGTAGTCGATA TGATGTCGTGTCGAAGACCCTGCGAGGGTTGTGCGACTCCACGCGGCCGG TGATCGGCTTCGGCCCAGACGATATATCGACGATTGACACGAGGACAACG CCTCGCTATTAAAATACAACAGAGCGAAAATAATTATCCGTTGGTGCCTT TTCCGCATGTATGCGTATCTTCCAAACCATGTACAAGTATTCTTGCCCTT CAACCGCTAAACGGCAAGAAAACGATCGACTTCTACGCTTTGTCGAGCAT ACCACACGGTCGAGATAAACGCACGAACATATGCGAACAGGGCACCGTCT ACGATCAACACACACCACGCTATGCAGGGAGTACCCCGCCTGTTCACCCT AGCTGTACCTGGCACTGGGCAGAGCACGCATTGATTGGGTGTGTCGCAAG TTGTGGCTGGTGATCGTTGGAGTTGAGCGGTAATCAATGTCTATCCGCCG CACTCCTCGCCACCGCACTCCACGTCTGCTGTACCATGTAATAGATATCT GAATATCATGATGCGCCAGTTGAACTAGCGGCTAGCAATGTACCGCTTGT TTACCATCCGAAAGAGTTGCGGTGGAAGTATATCGGAGGGAGCAGCTCTA GACTATTTATTGCTGGGTCTAGGGTGATGAATGAATGAATCAAGACGGCT CGCGGAGCCGAATTATGAATTGATACACTCCCCCCCCCCCCATTTTTTCG GGCGCTAATGTTCTAATGTTTTGTTCGGTTTTCTTTGCTACATTGACTTT AAGAGTCGTAAGACTTCAAACGTCGAACTAAGCAATTAGCACGGGAGGGA TCGCTCAAGCTTCTTTTGGAGCTTGACTGTTGTGTTGCAACACCAAGACA CACCCACCCGGTGAAAGTTGAACAATATTGAGCTATTTGGTGTAGGCCGT CTGTCTGTGCGTTTTCAAAGAGAGACAACGAGGAAATAAATGCTTTCATG AAAGGATGACATGATACGATGACTGTTCAACAACATAGACCACCTACAGC TGTAGGGGGCACGAACAAGTACGGAACTTATGCTGCTGATGAAGTAGTAC CTAGACGAAGGCGGCAGTTTTCCCACAGCTTATAGGGGAGGGGGGGGGGG TGGTAGTGGATAGACAACAGATACGTACATACATGCATACATCATCATCA GCAGAAGTTTCCGCCACCGGCAGTTTAGGTGTTAGTTGCTGTGTGTGGAA ACTGTGGTAAGAAATCATCGGCGGCGACAGTTAGTTTTGTCTCGTTCTAC TACATATCACACACAGCAGCAGCAGGCTCGATTGAAAGACGCGCCACACG CACCAACTAATTTCTTCTCGTTCCTTTTGCACTCCAGCACCCCTCCCATC TAGTGACAGCTAAACGTACGGACATGGAGGGAAGGTCAGGATAGTGTACT TGCGGATGGTCAGAACTGTGCTAGATGGGCATGGCTGATTTGCAGCCGTC GTTGTATGGCGCGGCCTTGGGCGCGGACAAGAGCCAGGAGCGTAGCCGCT GGGAAAGCAGTTGCAGAGGGCTCGGTGCGGGGGCGGGGGGAGGGTATGCA TAATATGGGACAGTACCCCCCCCCCGCATACCGCCCCCCCCCCGGTGTTT GCCATCGGAGTTGGGTTTTCGTCACTTGGCAACGACGTTGTAAAACAAGC CCCCCCCTCAATGTTTGCCATCGGGATTGGGTTTTCGTCGCTTGGCAACG ACGTTGTAAAACGAGCCAATTCACTTCGTGAGCTCGGCAACCAGGTTACC GTTTTTTTGTACCTCTGGTTGTTTTGTTGGCGGTAACCATAATGGTGGTC GAGTAGATCATGTTGTGCGGGGTCGAGAACCCTTACTCCGCGCAACGGGG ATGATCGCACCACGTTGTGTTGAAATGGTCAAGCATCCTCAAGGCAGTTA CACAGTCCTTACAACTGTCTTTGGAAGTGAAAGCACCAGAGGATATATTA ATCATACGCAGCTTGTCATCCGTACGCAAGGAAGGAAGCACAAGATGACA AACACCCTTCGCAAGATGCAGCGCACCCTTCATGCGACTCGTCGAATACC TCACGGCGCTTCGCGCTTGGTGATATGAGAGCCTGGTCCGGTGAGAACCC GGCGTGCTCCGTCCCGGCTTCGTAGGGATGCGAGGTCAATGGTCTAACGA CTACGGCATGCACGACTATTGAGTACATCCCCCCCCGCATACAAACGATA TACAGGTTATAATATACCACACTAAATCCTAGTTGAAACACCATATACGG TAGATACCCCCGGATCTGGTCCTTAATCCAGTTTGTGGCGTACGCCCGTA GTTCGGCTCCCCGAGCCCTCTTGAATGCATGCATGCTCATTTACCATTTT TCTCGACCCAGCACAAGAAGTTTCAAAAATCATTTTTACTCTGCGCTTTT TGCATGCAAAAATTTCTACCCTCTCCTACTGTGCAAGTTCAAATGAAAAA TAAAAACCACGTGTACTGGAATGGTGGTGTTACGTCCTGTATTTGGTTTC GGGGAGGACAAAAATACCTACATGGTATTTTCTCTTCCTCCCTACGGAGT CGTTTTCGTGTGTTTTCCCCCCGCGAGATTTTGACTTCGACATATTGATC GACAGGTTATTTTCATACACGCGCCCTCTCATAGAGAGGCATGGCCTTGC TTACTTGTGCCCCCCTCAACCCGCCACCCCCCCTCGGCCGCCATCGTCCC GTATTATCACCGACGCTGGGGGCCTGAAACTACCGCGTGCAACCTGCATC TCTACCGATCGTAGCGTCGGGTTTTGCTGGGACCTCGATATGGGTAAGGA CATACCTCCATGCCGCCATGCTATTGAGCGTATCGTACGAGTGTTTTGCG CAGACTGTCTGTTGCCTCCTTAGTTATTGCAACATGCGAAGTAATTTTCA GAAAAATGTAAACGCGTCTCGTGATGTTTTACCACAGCAAGAAGCGATCA ATCCCACAACTTGAAAGGCCTGCCCGACGTTCGTCTGCCCCGGGGGGCAC GCGTCTGGCGCAAGGCCAATCGCTGCTCCCTCAGGTGGATGGTCTACGGA CTACGTAATACGTCTAAAAGAACACACACCCCAACACCACCACATCGGTG ACCGGTCCTCTGGCAAAATTCTCCGTCCTCTCGAGGACGCATGGTCTATT CTCCAACGGAAAAGGCATGCAAAGCATTGGCACGCTCCCCCCCACCCCGG AAGAAGGGAGAAAGCGCCTCTTCATGTCGATATTTTCGCCGCCGCATACC TCATGAGCGAAGTCCATGGTACTGTCGTTACTGCGCTCACAACGTCAACC AGGGTTAACATTTGCGCTGCATCTCGTGTGCTGGTGTTCGTGGGGTGCTG ATGTCCGCAGGAATGGGACTACTTGCAGCTGTGGACCTCGCCCGTGGAAT CCTGTCGTTCGCGTCCATCGGTTATCGTCTTGCAGCGGACAAGTCAACGG TGGTAGCCCAGAAAAGAGAGGAGGAGGTGAGGTTGTTTTTTCGTACATTT GTCCCGCTACCTGTTGTTCACGATCCACCGCCCTCGTGCATCTTTTCTTC GTGAAGTTAGACGCAGCTTCTCGTCCCATACAAGACGCGGTGTTTACCAG TACCCACCTTCTCCTGCCGTCGTGACAGGAATGAACCATTTGTGCCGTTT TTTCGTCGCGCTGATTGGTCACACATCATCACAAGTTGTATGCGGGCATG CATACAAGGTAGCACGAGTGTCCCGAGAACAGCATGTAGTAGGTGGAACG CGCCTATCGCCAGGTTCTGCGTGCGCCAAGGAAGATAATCCTGCGCGATA CCATTAGTACAGCAGCATTAGTACAGCAGAACTTTTCTCTCTCCCTCTCC CTCTCCCTCCCTCCCCCCCCCTCTCTCTTTCTCTCTTTCTCTCTCTCTCT TTCTTTCTCTCTCTCTCTCCCCACCTCTATCTTCTCCCTTTCTCTCGCTC CCTCGTGTTTCTTCATAGTAGTTGGTTGCCGGCGCGAATCACACTCGTCA CGGCGACGTTCCTACTTTTAACCAGATGTCCTGGTGGATCGGTCACAGTC AGCGAGAGAGTTCAATCTCTGTCATATTACATGCACTTGGCGAGGCGGAG AGGTACTGCTACTGGCTTTCCCCTACGACTTGCAATCCGGGGAGGAGCCT TGGGTGCTCGAAGTTTGTTTAACGGTTTCCCTTCTTGCTTGGATTGCAGT TTGCGAGGGACTGCGAAGGGCTTGAGGAAATGCCCTACAAGTGCGAGCGT CTCATCAACAGCATTCTGGAACTCACCCTGGCGAACGACACCTTGGTGCC CAACGTCCTGGCAGGTGAAGTGGTGCCTGCAGACGTCAAATACGGATCGT CGGGGTCCAGTCTCTCCTCTTTGGGCCGAAGAACCAGCCTACGTTGTGTA TGTATACTTCTTGTATGTATGCCGTAGGTAATTCTCACCATTGTCGTTTT TATTTTCTTGGCCCTTCCGAATCCCGCCGGTTTTCTTAGTTGTTCACGTT TCTCTGCGTACTGTTTACCTTGTTTGCTTCCGATATTACACGTGTTAATG CCTTGACTGACGTTTCGGACCACTGCAGTAGCTGCCATATTTGAGTACGT GCGTAGGGGCGAAGGGAACACTACACAACGCGTTTCAATACACTAAACAT ATTCCAACACACTTGTGGGGGGAGGGCACATCCAAGAATATAAAACCCTT TCGAAACCTTGTGGCAGGCTCGGCAATACACAACGACGCGTTTACTAGCA CATTTTACCGATGCTGCGTGCGGCGCCATGGCAAGGGAAGCTGAGGCCGA GTAGAAATGGCAAAGATTCGGCGACATCAGCCACGTGGTTGTCGAAGTCA CGTCTGTTTTCCCTCCCACCGCTTCGCTCCAACAATTCTGTTTGATTTTG TGCGGCACCGATTGGCTCATGACCTCTGGGCACGACGAGAAGCTGCCGTT TTGGTCATGCTCGGCTTGATCGGGCTCCGGGCCTGGTGGTGTTTCGATGC ACGCGCGGCGAAATTCAACCTCTGGCTCCGTCCGTTGATGTACCTGATGT TCGCGGTGGTCATGGCGATACAAGTAACGAAGGAGATGAGCTACGGCAGG CACCCAGAGTGGGGCGCATTTGTATTTGTGCTGCTCTGCATGGTGTTGCA CATGATGTACTTGTCTAAGGTGCGGGGCATGGTAGAACTTGGACGGCGCA CTTGTTCCACACATATTGAAGAAAGTCATTTGTTTGGATACTTGATGGTG ACGGCAGCCAGCCGTAGCCGACAAGCGGAATGCCATCACATTCGTGACAG ACAACCCCGAAACCTAGACCGGTGTTTTCGACTTATTTTCCTGATCAACT TGTGGTTTGTCGGCGACGTCGACATTACACCGTTCGCGCCGGCTTTCGTT GGCATACAAACCTTGTTGTTCATTTGCTAGTTTCATACGTTGATTGTCTC TATCCTGGGGTAGCGTGTGCGTGCGTGGCTGTTCTCCGCAGGTTTGGTCA TTCTTGGCCGCTGAGGTAGTTCCACATCAACAGCAGAGCAGAGAGGCTTG GCATACGCCTTTCAATTTTCGCGTGTGCGTTTGTCCAAAGTAGACCGTTT GTCGTAGCCGTAGAGGCGATATCCATACACCGACGGATTCATTGTTCACA ACTGTAACGGTTGTTGACTCTTACGTTCGTGCAGTTTTTCTACACACTAC AATACGCAGCTTTTCAAGCCGTCTTTCGGTGCTGTCTTCCTCTTCGGTTG CTTCTCTCTCGTGTGTGGCAGGCCACGTGGTCTTATCACATATTCTTGCT GAAGAAGACCTCACGCGCCATACGGAAGGCGGGCATGGTCGAACTTGACG CGACGTCCCCGACCGTTTGACGGCAACACCAAGGGTACCAACCAAGATCG CGCCAGCCAGCGTTTCGCAATGTGCTCGGGATTGCATGTGGATGAAAACC ACAGCATTAACCCCCCTCTTGGCGCTAGCGAGCCCATGTTCCTTTGCCAT TGGTTGGCTTGTTTGCACTCCCTGCGAGGATAACCTCGGATTGCGAACAA TCGAAACGATGGAACACTTTGGTCGGCGTTGCCTGTCTGAAACTAGGTCG GTGTTGGGCGGCCGCTGGATGCGCGTGTATATAGTACGAGGTTGGGTCAC AACGCGACGGAAGCCTGCGTGAAGCTAGAGCAAGGATGGAAGAGTTTTGG GGTAGAAGCAAACGTCGCGCGACACGCGAGACTCTGTCTTCTACGTAAAA TAATGTTGAGTCTACTGTAACAGGGATGGGGGCCGGGGCCTGGTGTATTT CGTTCAGCGATCACTCGGGTTTGGTCTCCAGTGATTCGCCGCCTGCTTCC ACAGAATGTGCCGTTGAAGCGTTCACCGTTCACCACCAATATGAGGGATG GCACCATGAAACAGCCAAGGATAACAACACGACAAATAAATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig89:105266..112157+

>mRNA_Ecto-sp6_S_contig89.17915.1 ID=mRNA_Ecto-sp6_S_contig89.17915.1|Name=mRNA_Ecto-sp6_S_contig89.17915.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=747bp|location=Sequence derived from alignment at Ecto-sp6_S_contig89:105266..112157+ (Ectocarpus species6 EcLAC_371)
ATGTCGCAGGACAACCCAACGTATGTGCCGGTTGGTGGCGAGTTTGATGA
AGGACGCCCGGTGGCCCTTCCGCTTCACCGACAGCGGGATGCGCGAGGAG
TCGTGCCTCCGTCGCGGGGAAGGAGGAGGGAGTGGTGGTGGCAGCCTGGT
CCTGTCGATACCGTCGGGTTTTGCTGGGACCTCGATATGGGAATGGGACT
ACTTGCAGCTGTGGACCTCGCCCGTGGAATCCTGTCGTTCGCGTCCATCG
GTTATCGTCTTGCAGCGGACAAGTCAACGGTGGTAGCCCAGAAAAGAGAG
GAGGAGTTTGCGAGGGACTGCGAAGGGCTTGAGGAAATGCCCTACAAGTG
CGAGCGTCTCATCAACAGCATTCTGGAACTCACCCTGGCGAACGACACCT
TGGTGCCCAACGTCCTGGCAGCTGCCGTTTTGGTCATGCTCGGCTTGATC
GGGCTCCGGGCCTGGTGGTGTTTCGATGCACGCGCGGCGAAATTCAACCT
CTGGCTCCGTCCGTTGATGTACCTGATGTTCGCGGTGGTCATGGCGATAC
AAGTAACGAAGGAGATGAGCTACGGCAGGCACCCAGAGTGGGGCGCATTT
GTATTTGTGCTGCTCTGCATGGTGTTGCACATGATGTACTTGTCTAAGGC
CACGTGGTCTTATCACATATTCTTGCTGAAGAAGACCTCACGCGCCATAC
GGAAGGCGGGCATGGTCGAACTTGACGCGACGTCCCCGACCGTTTGA
back to top