mRNA_Ecto-sp6_S_contig87.17825.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17825.1
Unique NamemRNA_Ecto-sp6_S_contig87.17825.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig87.17825.1 vs. uniprot
Match: D7G0M3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M3_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 7.870e-75
Identity = 190/305 (62.30%), Postives = 190/305 (62.30%), Query Frame = 1 
Query:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPLFDDDNXXXXXXXXXXXXXXXXXXXXXXXXLSDAEASMVDEDTAMGDAGEEDAGGGXXXXXXXXXXXXXXXXXXXXXNTASELAAKLKKKRRQAKRRNYVEFSAHEN*QDSHPAFLYTCVDDACAALLG*KDNVEQAFPP*LGHILFWGEGYSCLCMP*SLDH*PRIPSVPKTERSVGFSPAHATFHKDDLEAGHDPCVCCGKPDMLWVEWASRVCNLPDVT 915
            MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPLFDDDNXXXXXXXXXXXXXXXXXXXXXXXXLSDAEASMVDEDTAMGDAGEEDAGGG XXXXXX    XXXXXX    NTASEL                                                                                                         DDLEAGHDPCVCCGKPDM WVEWASRVCNLPDVT
Sbjct:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPLFDDDNXXXXXXXXXXXXXXXXXXXXXXXXLSDAEASMVDEDTAMGDAGEEDAGGGPXXXXXXDGVSXXXXXXEGGRNTASEL---------------------------------------------------------------------------------------------------------DDLEAGHDPCVCCGKPDMPWVEWASRVCNLPDVT 200
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BLAST of mRNA_Ecto-sp6_S_contig87.17825.1 vs. uniprot
Match: A0A6H5JDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ5_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 5.160e-67
Identity = 172/193 (89.12%), Postives = 174/193 (90.16%), Query Frame = 1 
Query:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPLFDDDNXXXXXXXXXXXXXXXXXXXXXXXXLSDAEASMVDEDTAMGDAG---EEDAGGGXXXXXXXXXXXXXXXXXXXXXNTASELAAKLKKKRRQAKRRNYVEFSAHEN 570
            MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPP FDDD     XXXXXXXXXXXXXXXXXXXXLSDAEASMVDEDTAMGDAG   E      XXXXXXXXXXXXXXXXXX   NTAS++AAKLKKKRRQAKRRNYVEF AHEN
Sbjct:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPPFDDDKNEATXXXXXXXXXXXXXXXXXXXXLSDAEASMVDEDTAMGDAGDGGEXXXXXXXXXXXXXXXXXXXXXXXXGERNTASDVAAKLKKKRRQAKRRNYVEFPAHEN 193
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BLAST of mRNA_Ecto-sp6_S_contig87.17825.1 vs. uniprot
Match: A0A835Z2D3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.030e-18
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPP 249
            MAKSIRSKVKKRNR +MRK  G+PH +++QA+CTA++Q++V + +G  + KLKG+L  AQA NP   EVSK   +F+HP A P
Sbjct:    1 MAKSIRSKVKKRNRADMRKQYGEPHAQQIQAKCTARLQETVQYHSGPGINKLKGLLNKAQAENPLQPEVSKHSHTFKHPYAKP 83
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BLAST of mRNA_Ecto-sp6_S_contig87.17825.1 vs. uniprot
Match: A0A6H5LK32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LK32_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.350e-6
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  718 MP*SLDH*PRIPSVPKTE-RSVGFSPAHATFHKDDLEAGH 834
            MP SLDH PR PS  +TE R+ GFSPA A+FHK+D EA H
Sbjct:    1 MPKSLDHRPRAPSNAETEERNAGFSPAQASFHKEDPEAQH 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0M3_ECTSI7.870e-7562.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDQ5_9PHAE5.160e-6789.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2D3_9STRA4.030e-1856.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LK32_9PHAE4.350e-665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:450864..454877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1469
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionUncharacterised protein family UPF0642
Ec32 orthologEc-07_001560.1
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350497.856021-UTR-Ecto-sp6_S_contig87:450863..4517591682350497.856021-UTR-Ecto-sp6_S_contig87:450863..451759Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig87 450864..451759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350497.8753498-CDS-Ecto-sp6_S_contig87:451759..4518341682350497.8753498-CDS-Ecto-sp6_S_contig87:451759..451834Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 451760..451834 -
1682350497.8859148-CDS-Ecto-sp6_S_contig87:452635..4528721682350497.8859148-CDS-Ecto-sp6_S_contig87:452635..452872Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 452636..452872 -
1682350497.896171-CDS-Ecto-sp6_S_contig87:453818..4539431682350497.896171-CDS-Ecto-sp6_S_contig87:453818..453943Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 453819..453943 -
1682350497.9086978-CDS-Ecto-sp6_S_contig87:454741..4548771682350497.9086978-CDS-Ecto-sp6_S_contig87:454741..454877Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 454742..454877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17825.1prot_Ecto-sp6_S_contig87.17825.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 451760..454877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17825.1

>prot_Ecto-sp6_S_contig87.17825.1 ID=prot_Ecto-sp6_S_contig87.17825.1|Name=mRNA_Ecto-sp6_S_contig87.17825.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=191bp
MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVT
KLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPLFDDDNDEATAPAPSPS
RNARGRTRGRARSLSDAEASMVDEDTAMGDAGEEDAGGGPAGGGGGDGVS
GGAKGGEGGRNTASELAAKLKKKRRQAKRRNYVEFSAHEN*
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mRNA from alignment at Ecto-sp6_S_contig87:450864..454877-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17825.1 ID=mRNA_Ecto-sp6_S_contig87.17825.1|Name=mRNA_Ecto-sp6_S_contig87.17825.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4014bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:450864..454877- (Ectocarpus species6 EcLAC_371)
ATGGCCAAGAGTATTCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGAT
GCGCAAGAACGTAGGCGACCCCCACCAGCGGAAGCTGCAGGCACGCTGCA
CCGCGAAGATCCAGAAGTCCGTCGCGTTTAGTGCAGGTGGGTTGCATCGC
GCCCTTGACAGCGTTGAGGTGCCCGGTGCTTTTATGCTGGGGTCTTGAGG
CTCGGCGTGGGAGAGGGGGGGTGTACTCATAGCCGGGCATGCCGTAGTCG
TTAGGCTTTTCACCTCGCATGAAGACAACAACAACTACTACAACGCTGAG
ACGGAGCACGCCGGGTTCTCACCGGACCGGGTGTATGTGGGTCCGGGTCA
TGAGGTACTGGCAGTGCGGTGTATCGGGATGTTGTGTGTGATGTTGTTGG
ACGGCTCGTCGAATACCGTAAACGGAGTGGCACACATGGGATCACAGTAG
ATGGGAACCGTTTTTCATGAACAGCTGTCTGTGTACTTGAACCGCACGAG
CATGTTGCGCTCTTTTCCGTTCTCGCTGGTCTCACCATGTTTCCATGAGA
CACACTTTTCGTACTCCAGTTTACTAATGCACATGTCCACCCTTGGTAGC
AGCGAGTTTTATAGACACGGAAGGCGCAGCGCATCTGATGAGCTTCGGTT
TTCGTTGGCCCAGGCCTGTGTTGCCTGTGTTGCTCGTCCCAGTTATTCCG
TACGCCCTGCACTACTACCTTCACTGCCGCCAGTTCTTGCGCCTCTCCAT
CAATCCGACATGGGTTTGTACCTACAACTCTTGTTCCCGGGTGTGGTTTG
CTTCGTGACCATGGCTACATAGTCGAACGATACCCACAACTTTTGCGGGC
AGGTTCATTTTAAATCGCGGCTCTTTGTTTTTTGTGGGTGTGTGGTTTTC
CTCGTGCGGCGCCGCGCGCACACCCCACCACCAGGCGAGAGCGTGACGAA
GCTCAAGGGCATGCTGACCGCAGCGCAGGCGGCCAACCCGCCTTCCAAGG
AGGTTTCCAAGAGCGGGTTCTCTTTCCGGCACCCTGACGCGCCCCCTCTG
TTCGACGACGTGAGTACCTTCAATTACCGCTGCTGTAGCCGCTCGAATAT
CTTATTTGCGTGTTTTGTCTTCTTTTTGGTCGACTGTATTTATTTTCCTG
TTCTCGGTTCCTCTGCATAGCCAACCTACGTTTCGCCTTTGCCTCTGTAG
CTGAGGGTCTTCTTCCAGGGCCCCGCTGTGTTCCCGATTGGTAGGTTTCA
TTCGAAAGGAAAGTTTTTTATGGCATGTGAAAAATTCCTGGTCAACCGGT
GACGTCACAACCGGGGAGTGTGACGTCACTCTCCGGGATAACCTATTCCG
AGAGTGTCAGATTGACGCGTGGACGTTCCGGACGCCAGACAGGCTAGTCG
CCACCCACACGTCTTTTGCATGCGCGTCTTAATTACTGGGGGGCCTTGTG
CAAGGCGAGAGAGACGCTCTCGACCCACGGACCGCACTGTCGTCCCTCAA
GTAGCGATCCTGCCCGGCAGTCAGACGGCAGTCCTCGCCTGGTCAGCGAC
ACCGTGACGCCGACAAAAGGCCGTTCCAGATGCGCCTTGGAACGGGCCGT
TTGTTGCCGCCACCGTGACGCCGAGCCAGGCGTGGAATACTACTAGAGTG
CCGGCGTCGCCGCTGCTTGGGAGATGAACGCACCTCGCATGCCAAGACGC
ACCGCTCGAGAATAGTTAAAAAGCTGAAAAGCTGGAGATTGGTTGGAGTG
GCCGATGCCGAGAAGGCGGCGGTGAAGTGATGGGCAGGCCGTCAACCTTG
GCAAATCCTTCGCGACACCCTGTTGAATCCTCACGTCCTCGCTGATCCCC
GGCGTGCGCAAATCCATTGGAGTCACTTTTTTTGTCTCCCGACGGTCATG
CTCGTGAGTTTAGTTCTTATTTCTTATTTTCTTCTATTTTTGCGATTGCT
CCTGCTTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGGC
TCCAGGATAATGACGAAGCGACGGCACCGGCGCCGTCCCCGTCGCGAAAC
GCCCGCGGCCGCACCCGAGGGCGAGCGAGGAGCCTCTCCGACGCCGAGGC
CTCCATGGTCGACGAGGACACGGCCATGGGAGATGCTGGCGAGGAGGATG
CTGGCGGGGGACCCGCGGGCGGCGGGGGGGGGGACGGGGTCAGTGGGGGT
GCAAAGGGCGGCGAGGGGGGACGAAACACGGCCTCTGAACTGGTGAGATT
TTGTGGGAGATAGGGATTAACTGCCTGCTTCTGCGGGACCCCCTGTGTTT
CGTCCCCTCCCCCCGGTGTTGCCGCAGCTGACGGACGTACTGTAACTCCA
ACTACCCAAAGTCGGCGAATACGGGTACGTAACATCTTCACGTAACATCT
TCCAGTTGCAGTAGCCGACATCACGGAGACTTTGTGTGTCGTGCTCCCGG
GGGCTCCGCCGTTTCGCGTTGGATTTCTTCGTAGGCAAGCGGCGGCGCCC
GACCAGGAAACACTCTGTCTGGGGCATGCGCAGCGGCAACCACGCAAAAA
TATGGAATGGAAAAAACTTTGCTGTTTTTGGGCGTGTGGAACACATCTAA
CGATGTGGCGGACGTATACTAGCTCCCCCTCTGAAACGACGCCCAGGAGA
CCGTGGATCAACTCTACGCCAGCCGTTCGGGTTCCGGTCACCACTTTTAT
AGAATCCTTCTTCCTGTCTAGCAAACAATAGTAACGATTCTGAATACATA
AGGGGAAGCAATAAGGAGGTGGCAATAGTGTCCGTGACGTCTGTCAATGG
TGGACAATTTCGTCTCTCTTTCCGTCACATTTAATTGTTGACACCGTCCT
GTGCTTATCTCGGGTTCATACATAACAGGAGGCTCATGCTTCTCCCAACC
TTTCGTAATTTCATTGTTCTCGCTGCTTCTGAGGCTTACTCCTGACGCTT
GCCTCGTTTTTTAATATTACCACACCTTACCTCCATGCGCTTTACCACCG
CCTTTGACAATGTCAAACCTGGATGTCAATGTCTTGTGCGCAGGCCGCGA
AGCTCAAGAAGAAGCGTCGACAAGCCAAGAGGAGAAATTATGTCGAGTTC
TCGGCACACGAAAATTGACAAGACAGCCACCCTGCATTCCTGTACACGTG
CGTGGACGATGCATGCGCCGCGCTCCTGGGTTAAAAGGACAACGTGGAGC
AGGCGTTTCCTCCGTGACTGGGCCACATTTTGTTTTGGGGCGAGGGGTAC
TCATGTTTATGCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTTC
CGTGCCGAAGACGGAGCGATCTGTCGGTTTTTCGCCGGCCCACGCTACGT
TTCACAAGGATGACCTAGAAGCTGGTCATGATCCTTGCGTTTGCTGTGGC
AAGCCAGATATGCTATGGGTTGAATGGGCATCCCGGGTGTGTAACTTGCC
TGACGTAACCTGATGGAGCGTGTGTGTATCGCAGGTGTTCTCTTTTTCTA
TTTTAATGTGGCAGCAGTAGTGGTGGACGGTGTGCTACAAAATCATACGC
GCCTTTTCTCTTTTTTATAGCTCCTCGGTCGATTAGCTGCTGGATTGTTG
TCCTTGACGACAGCAGTGTGCCATACCTAGTTTGCACGTTTACCCGCAAC
AATAATAGCAAGAACGAATGCGGCTAGTGTGTATGAGAGTTGATTCCGAA
GAGGGTGGACGTCGCTATTTGCAGAGAACATTTAATGCCGCTGAGAAAAC
GTACGAAGTGCGTGATTGATTCTTATTGGCCAACACCGAAGCGCGGCTGA
ATTCTGATTGGCCAAACGGTGCGAGAATATTACGTCGTCTTGGAGCGGCG
GCGTGATCCACGCTGGCTATCACCCCCCCCTGTTCCTTGGCCGGTGCGTG
AATGATTGATAGTCGTATGCAGTTACTCGGTGAGAGTGGCTTTATCATGG
TGTTGGAACTTCAAACGTTGTTCCTCTTGCAACGATTCAGCCCTTCGCGG
AGTAAACCTTTCGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:450864..454877-

>mRNA_Ecto-sp6_S_contig87.17825.1 ID=mRNA_Ecto-sp6_S_contig87.17825.1|Name=mRNA_Ecto-sp6_S_contig87.17825.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:450864..454877- (Ectocarpus species6 EcLAC_371)
ATGGCCAAGAGTATTCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGAT
GCGCAAGAACGTAGGCGACCCCCACCAGCGGAAGCTGCAGGCACGCTGCA
CCGCGAAGATCCAGAAGTCCGTCGCGTTTAGTGCAGGCGAGAGCGTGACG
AAGCTCAAGGGCATGCTGACCGCAGCGCAGGCGGCCAACCCGCCTTCCAA
GGAGGTTTCCAAGAGCGGGTTCTCTTTCCGGCACCCTGACGCGCCCCCTC
TGTTCGACGACGATAATGACGAAGCGACGGCACCGGCGCCGTCCCCGTCG
CGAAACGCCCGCGGCCGCACCCGAGGGCGAGCGAGGAGCCTCTCCGACGC
CGAGGCCTCCATGGTCGACGAGGACACGGCCATGGGAGATGCTGGCGAGG
AGGATGCTGGCGGGGGACCCGCGGGCGGCGGGGGGGGGGACGGGGTCAGT
GGGGGTGCAAAGGGCGGCGAGGGGGGACGAAACACGGCCTCTGAACTGGC
CGCGAAGCTCAAGAAGAAGCGTCGACAAGCCAAGAGGAGAAATTATGTCG
AGTTCTCGGCACACGAAAATTGA
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