mRNA_Ecto-sp6_S_contig87.17788.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17788.1
Unique NamemRNA_Ecto-sp6_S_contig87.17788.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: D8LQW5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW5_ECTSI)

HSP 1 Score: 791 bits (2042), Expect = 3.090e-284
Identity = 475/556 (85.43%), Postives = 478/556 (85.97%), Query Frame = 1 
Query:    1 MSGRTMPFQFHTRRPSAVVRQSGPGRSTLHVDLAAGGXXXXXXXXXXXXGAGRGRGXXXWRGRRGWWGSSRRLPDFLEFWGFATPVSEDERLRREREXXXXXHRRRGLAGSCVRSPEFSIFVLGLASLLAFIVFICDMITGRRLRPTSVLVFVAAGTYCLALIKQQRDLAASEQALVIEIMDGSATSSSRRVISKEDRRNLFDYFTFRPSSSTNKGVRTAATATQTDKDVEVSAMEQGTAAPTAXXXXXXXXXXXXGEVSGGGIRSDREDEAGSPRPCSLPSPLGLSAPTRGPRGAGSDTAAPPSPVQPRATPPVSPSALALAGTLQGEGAAAAVGGVADDGT------AEVLG--------GV-----------------EVASGRDEGESAIRGSCCGGGVADSDGAXXXXSGSKPSVAGPEKRLPPEGEELDDKEVPERGMTGGLSELWSSGESCIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNSSDNDEIDGAGGTNATTTSGDSNAEWLGSPAPAAGAATVGDEAV 1575
            MSGRTMPFQFHTRRPSAVVRQSGPGRSTLHVDLAAG XXXXXXXXXXXX       XXX       WGSSRRLPDFLEFWGFA  V EDERLRREREXXXXXHRRRGLAGSCVRSPEFSIFVLGLA+LLAFIVFICDMITGRRLRPTSVLVFVAAGTYCLALIKQQRDLAASEQALVIEIMDGSATSSSRRVISKEDRRNLFDYFTFR SSSTNKGV TAATATQTDKD EVSAMEQGTAAPTAXXXXXXXXXXXX    GGG  SDREDEAGSPRPCSLPSPLGLSAPTRGPRGAGSDTAAPPSP QP ATPPVSPSALALAGTLQGEGAAAAVGGVAD          EV+G        GV                  VA GRDEGESAIRGSCCGGGVADSD +    SGSKPSVAGPEKR PPEGEE DDKEVPERGMTGGLSELWSSGESCIICFGEY EGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRN SDNDEI GAGGTNATTTS DSNAEWLGS APAAGAATVGDEAV
Sbjct:    1 MSGRTMPFQFHTRRPSAVVRQSGPGRSTLHVDLAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGSSRRLPDFLEFWGFAAAVPEDERLRREREXXXXXHRRRGLAGSCVRSPEFSIFVLGLAALLAFIVFICDMITGRRLRPTSVLVFVAAGTYCLALIKQQRDLAASEQALVIEIMDGSATSSSRRVISKEDRRNLFDYFTFRRSSSTNKGVWTAATATQTDKDAEVSAMEQGTAAPTAXXXXXXXXXXXXXXXXGGGDTSDREDEAGSPRPCSLPSPLGLSAPTRGPRGAGSDTAAPPSPEQPLATPPVSPSALALAGTLQGEGAAAAVGGVADXXXXXXXXXVEVVGVSGKEEGGGVMMLAPSSGAAAGLSPLFSVALGRDEGESAIRGSCCGGGVADSDESGEGGSGSKPSVAGPEKRPPPEGEEFDDKEVPERGMTGGLSELWSSGESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNGSDNDEIGGAGGTNATTTSADSNAEWLGSSAPAAGAATVGDEAV 556
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: A0A6H5KVF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF8_9PHAE)

HSP 1 Score: 429 bits (1102), Expect = 1.500e-143
Identity = 271/365 (74.25%), Postives = 285/365 (78.08%), Query Frame = 1 
Query:    1 MSGRTMPFQFHTRRPSAVVRQSGPGRSTLHVDLAA--GGXXXXXXXXXXXXGAGRGRGXXXWRGRRGWWGSSRRLPDFLEFWGFATPVSEDERLRREREXXXXXHRRRGLAGSCVRSPEFSIFVLGLASLLAFIVFICDMITGRRLRPTSVLVFVAAGTYCLALIKQQRDLAASEQA--LVIEIMDGSATSSSRRVISKEDRRNLFDYFTFRPSSSTNKGVRTAATATQTDKDVEVSAMEQGTAAPTAXXXXXXXXXXXXGEVSGGGIRSDREDEAGSPRPCSLPSPLGLSAPTRGPRGAGSDTAAPPSPVQPRATPPVSPSALALAGTLQGEGAAAAVGGVADDGTAEVLGGVEVA--SGRDEG 1077
            MSGRTM FQFHTR PSAVVRQSGP RSTLHVDLAA  G          XXX       XX WRGRRGWWGSSRRLP+FLEFWG A  V E ERLRRERE     H RRG  GSCVRSPEFSIFVLGLA+LLAF+VF CDMI GRRLRPTSVLVFVAAGTYCLAL+KQQRDLAA E+A  LV+E+MDGSATSSSRRVISKEDRRNLFDYFTFR SSS NKG   A TATQTD  ++VS ME+GTAA  A   XXXXXXXXXG VS  G RSDRED++ SPR   LPSPLGL APTRG      DTAAPPSP Q  A  PVSPS LALAGTLQGEGAAAAVGGVADDGT EVLGGVEV   SG+D+G
Sbjct:   26 MSGRTMSFQFHTRGPSAVVRQSGPERSTLHVDLAAADGETTAATGAAAXXXXXXXXXXXXGWRGRRGWWGSSRRLPNFLEFWGLAAAVPEGERLRRERERRERSHNRRGPVGSCVRSPEFSIFVLGLAALLAFMVFFCDMIAGRRLRPTSVLVFVAAGTYCLALLKQQRDLAALERAPALVVEVMDGSATSSSRRVISKEDRRNLFDYFTFRRSSSANKG---AWTATQTDIGIDVSTMEKGTAALAAAPMXXXXXXXXXGGVSVVGDRSDREDKSVSPRSFPLPSPLGLPAPTRGSGXXXXDTAAPPSPEQQLAASPVSPSTLALAGTLQGEGAAAAVGGVADDGTTEVLGGVEVVEVSGKDDG 387
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: A0A6H5KUH7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH7_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 3.900e-85
Identity = 143/179 (79.89%), Postives = 148/179 (82.68%), Query Frame = 1 
Query: 1057 ASGRDEGESAIRGSCCGGGVADSDGAXXXXSGSKPSVAGPEKRLPPEGEELDDKEVPERGMTGGLSELWSSGESCIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNSSDNDEIDGAGGTNATTTSGDSNAEWLGSPA------PAAGAATVGDEAV 1575
            ASGRDEGESAIRGSCCGGGVA+SD      SGSKPSVAGPEKR P EG E DDK+V ERGMTG LSELWS  ESCIICFGEY EGDVLCRLPCRHTYHAECIDAWLD PGHSWCPLCKSSLL PSEPRNSS+N E    GGTNA+TTS DSNAE LGSPA      PA+GAA VGDEAV
Sbjct:    4 ASGRDEGESAIRGSCCGGGVANSDECGGGGSGSKPSVAGPEKRPPLEGGEFDDKDVRERGMTGRLSELWSCSESCIICFGEYAEGDVLCRLPCRHTYHAECIDAWLDSPGHSWCPLCKSSLLLPSEPRNSSENGETADGGGTNASTTSADSNAEQLGSPATAAAATPASGAANVGDEAV 182
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.080e-16
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1 
Query: 1264 SSGESCIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPS---EPRNSSDNDEIDGAGGTNATT 1494
            S+G SCI+CFG+Y  G+ LCRL C H YHA+CID WLDG  H WCPLCK+ ++  S   +P  SS+N+    +G T   T
Sbjct:  247 STGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDIMSTSGYLDPAGSSNNNNAVRSGITGQDT 326
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.970e-15
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 1 
Query: 1231 RGMTGGLSELWSSGE-----SCIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLL 1422
            R   GG+    + GE     SCI+CFG+Y  G+ LCRL C H YHA+CID WLDG  H WCPLCK+ ++
Sbjct:  238 RTDAGGVLGEEAKGEGSTRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDII 306
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: D7FRQ0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ0_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 8.150e-15
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query: 1261 WSSGESCIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSL---LPPSEP 1437
            WS+G++CI+CFG+Y  GD L RLPCRH YHA+CID WLD      CPLCK+ L    PP +P
Sbjct:  253 WSTGQACIVCFGDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDP 314
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: A0A6H5JEY0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.940e-14
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1 
Query: 1261 WSSGESCIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLPPSEPRNSSDNDEIDGAGGT 1482
            WS+G++CI+CF +Y  GD L RLPCRH YHA+CID WLD      CPLCK+ L   + P + S +    G  GT
Sbjct:  153 WSTGQACIVCFSDYEPGDRLARLPCRHVYHAQCIDEWLDRAKLPSCPLCKTDLRHATPPDDRSRSISTVGGAGT 226
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: D7FRQ1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.230e-13
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1 
Query: 1261 WSSGESCIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSL 1419
            WS+G++CI+CFG+Y  GD L  LPCRH YHA+CID WLD      CPLCK+ L
Sbjct:  346 WSTGQACIVCFGDYEPGDRLALLPCRHVYHAQCIDEWLDRAKIPSCPLCKTDL 398
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: A0A8K0G2N6_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G2N6_9COLE)

HSP 1 Score: 71.6 bits (174), Expect = 1.480e-10
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1 
Query: 1267 SGESCIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLLP 1425
            S E+C ICFGEYVE  +LC+LPC H YH +CI  W D      CPLC+ S+LP
Sbjct:  169 SDENCAICFGEYVEQQLLCKLPCNHFYHYDCISKWFDE--KYICPLCRMSVLP 219
[Close]
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Match: W7TAS2_9STRA (Zinc finger, RING-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAS2_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.420e-9
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1 
Query: 1279 CIICFGEYVEGDVLCRLPCRHTYHAECIDAWLDGPGHSWCPLCKSSLL 1422
            C IC G+Y EG+ LC LPCRHTYH +C++ W+    H+ CPLC   LL
Sbjct:  133 CSICLGDYEEGETLCLLPCRHTYHDDCLNVWISA--HAKCPLCNYDLL 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW5_ECTSI3.090e-28485.43RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KVF8_9PHAE1.500e-14374.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUH7_9PHAE3.900e-8579.89RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI2.080e-1651.25RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K661_9PHAE7.970e-1552.17RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ0_ECTSI8.150e-1558.06RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEY0_9PHAE3.940e-1450.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FRQ1_ECTSI7.230e-1360.38RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8K0G2N6_9COLE1.480e-1056.60Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
W7TAS2_9STRA3.420e-954.17Zinc finger, RING-type n=1 Tax=Nannochloropsis gad... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:121257..125906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score802.0
Seed ortholog evalue1.7e-229
Seed eggNOG ortholog2880.D8LQW5
Model size1578
KEGG koko:K03257,ko:K15694
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-07_001840.1
EC2.3.2.27
Cds size1578
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko03019,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17788.1prot_Ecto-sp6_S_contig87.17788.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 121257..125906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350494.3919392-CDS-Ecto-sp6_S_contig87:121256..1214781682350494.3919392-CDS-Ecto-sp6_S_contig87:121256..121478Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 121257..121478 -
1682350494.4014115-CDS-Ecto-sp6_S_contig87:122438..1225601682350494.4014115-CDS-Ecto-sp6_S_contig87:122438..122560Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 122439..122560 -
1682350494.409134-CDS-Ecto-sp6_S_contig87:123193..1233711682350494.409134-CDS-Ecto-sp6_S_contig87:123193..123371Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 123194..123371 -
1682350494.4169106-CDS-Ecto-sp6_S_contig87:124069..1246021682350494.4169106-CDS-Ecto-sp6_S_contig87:124069..124602Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 124070..124602 -
1682350494.4248044-CDS-Ecto-sp6_S_contig87:124892..1250311682350494.4248044-CDS-Ecto-sp6_S_contig87:124892..125031Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 124893..125031 -
1682350494.4325519-CDS-Ecto-sp6_S_contig87:125522..1259061682350494.4325519-CDS-Ecto-sp6_S_contig87:125522..125906Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 125523..125906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17788.1

>prot_Ecto-sp6_S_contig87.17788.1 ID=prot_Ecto-sp6_S_contig87.17788.1|Name=mRNA_Ecto-sp6_S_contig87.17788.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=526bp
MSGRTMPFQFHTRRPSAVVRQSGPGRSTLHVDLAAGGGATTAAAGAAAGG
AGRGRGAGGWRGRRGWWGSSRRLPDFLEFWGFATPVSEDERLRRERERRE
RSHRRRGLAGSCVRSPEFSIFVLGLASLLAFIVFICDMITGRRLRPTSVL
VFVAAGTYCLALIKQQRDLAASEQALVIEIMDGSATSSSRRVISKEDRRN
LFDYFTFRPSSSTNKGVRTAATATQTDKDVEVSAMEQGTAAPTAAAAATA
AAADDDGEVSGGGIRSDREDEAGSPRPCSLPSPLGLSAPTRGPRGAGSDT
AAPPSPVQPRATPPVSPSALALAGTLQGEGAAAAVGGVADDGTAEVLGGV
EVASGRDEGESAIRGSCCGGGVADSDGAGGGGSGSKPSVAGPEKRLPPEG
EELDDKEVPERGMTGGLSELWSSGESCIICFGEYVEGDVLCRLPCRHTYH
AECIDAWLDGPGHSWCPLCKSSLLPPSEPRNSSDNDEIDGAGGTNATTTS
GDSNAEWLGSPAPAAGAATVGDEAV*
back to top

mRNA from alignment at Ecto-sp6_S_contig87:121257..125906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17788.1 ID=mRNA_Ecto-sp6_S_contig87.17788.1|Name=mRNA_Ecto-sp6_S_contig87.17788.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4650bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:121257..125906- (Ectocarpus species6 EcLAC_371)
ATGTCCGGTCGGACGATGCCCTTCCAGTTCCACACGCGCCGACCTTCGGC
CGTGGTTCGCCAGTCCGGCCCGGGGAGATCGACCCTGCACGTCGACTTGG
CCGCCGGCGGCGGCGCAACCACAGCAGCAGCAGGAGCAGCAGCGGGCGGC
GCCGGCAGGGGCAGGGGGGCCGGCGGTTGGAGGGGGAGGAGGGGATGGTG
GGGGTCCAGCCGCCGGCTTCCGGACTTCCTCGAGTTTTGGGGCTTTGCGA
CGCCGGTTTCCGAGGACGAGAGATTGCGGAGGGAACGCGAGCGTCGTGAG
CGTAGTCATCGCCGCCGTGGACTCGCTGGGTCGTGCGTGCGGTCGCCGGA
GTTTTCGATCTTCGTCCTGGGGCTGGCCTCGCTGGTGAGAGAGGCGTTGT
GGGCCGCCCGGCTGTCACTTTTGCCTGCGCTCTCTCCGAACTGTGCGTGC
GCGCCGGCTTGTGTGTCTTGGCATCGAACGCGCTGGCCAATGAAAAGACT
CCAGTTTTCAGTACGGCTGAACAACAGCGAAAAGCTTCTGTAAGCCATGA
TCTGAGATACCCGTGAGGGGGTGTCACGGGGAAGTGTGTGTGTGTGTGTG
TTTGCGTGTGCGCGTGTAATTTTTCTTGTATCTCAAGCGTCTCAGCGTCT
GCCGTTTCTTTCCGTTGGTATCTTATACCTCTTCCGTTGTTTTTATGTCT
GTTGCTGCGGCCCTCGGGCACCTGTCGCTTGCCCCCCCTCTGGTGCTCGT
CCCCTATCCGTGCCGCCGTGATGTAACCCCCCGTACCCGCAAACCCTTTC
CGTTGAATCCTATCGCCCCCCCCCCCCTCGTGTGTTATGCGTTAATTCTG
ATCCGTCGGGTGGGTAACGAAACAGCTGGCCTTCATCGTGTTCATCTGCG
ACATGATCACCGGCCGGAGGTTGAGGCCGACTTCGGTCCTGGTCTTCGTC
GCAGCGGGCACCTACTGCCTCGCCCTAATCAAGCAGCAGCGGGACCTCGC
AGCCTCGGAGCAAGGTTCGTTGGTTCGTGGAGAGCGTATTGTCGCGTCGA
AAGACTTCCCCAACATAACGCAAGATGTCTCGCGTATGGTTCAGGAGGGT
GGCAGTTGGCTCTTCCAAGTACAACGTAGTAACACAAATACATACACATG
CATTCGAATCAGCTTTGCGAAGCTTACGCCGTCGCCCAACAAGATGGACT
GGCGCAAAATTCATGACAACATTTTTCCCAGCCTCCTATTCAAGCTGATC
ATCCCCGGCAAACGTACTTGCTCACACTTTTCCGAAACAATCCCACAACA
CCAGCGCTCGTGATCGAAATCATGGACGGCTCGGCAACCAGCTCTTCTCG
GCGGGTGATCAGCAAAGAGGACCGGCGAAACCTGTTCGACTACTTCACGT
TCCGACCGTCTTCCTCCACCAACAAGGGGGTTCGGACAGCGGCGACGGCG
ACTCAAACAGATAAAGATGTTGAAGTGAGCGCCATGGAGCAGGGGACGGC
TGCGCCTACGGCGGCGGCGGCAGCGACGGCGGCAGCAGCGGATGACGATG
GCGAGGTCAGCGGCGGCGGAATCAGGAGCGACCGCGAGGATGAAGCTGGG
TCACCGCGGCCTTGTTCTTTGCCGTCGCCTTTGGGGCTTTCCGCGCCGAC
CCGTGGGCCGCGGGGGGCGGGTTCTGATACCGCTGCGCCCCCTTCTCCGG
TGCAGCCACGCGCAACTCCGCCAGTGTCGCCCTCGGCTCTGGCGCTGGCG
GGCACCCTGCAAGGGGAAGGAGCGGCGGCGGCGGTCGGTGGTGTTGCTGA
CGACGGGACGGCGGAGGTTCTTGGGGGGGTTGAGGTGGTGGAGGTTTCGG
GGAAGGAGGACGGGGGAGGGGTGATGATGCTGGCGCCGTCGTCGGGAGCG
GCGGCGGGATTGTCTACGTTCTTTTCTGTGGTAAGGGGGGAGTGGGGGGG
GGGTCAGGAGATAAATCGACAGGCAGACAGAGGCGGATGTACAGAGAGAG
AGAGAGAGAGAGAGAGAAAGAGAGGGAGGGAGAGGGGCAGAGACAGATAC
GGAAGAGAGGGTGGGTTGGTGGGGGTTGGTGACAGCGAGAGAGAGACAGA
CTTGGAGACACACTTGGAGACACACAGAGAGGGAGATGGAGATTGAGAGG
GAGAGGGAGAGAGCAACAGTCTAGGCGGCCGACACGAACGGGGAAATCAA
TCGCCGAAGCGCCTGCATGTAGTACACATGTTGCACGCCTTTTTTGACGC
CATGCTGCCTGTGCGTTTATCGAGACGGTTCTCGATACGGCGGCGCCCTC
CCGCCGCTTGGAAAGGCAGTCCTGTCCACAACGCGCGCATCGTGACTCTT
GTTGTGTAGCGTGCTACACACATCGCGCTATCTTCGCGTGGGCGTGCTTG
ATCGTGTTCATCTCGTCGTCGTCCAAAGGACACACAGGTGTTAGTGTTTT
CCGCTGACTTGTGCTTCCGCCGATGCCCTCGCCCCCCTCCCCACCGTGCT
GCGCTGTTTCGGTGGACGTGTGTGGACTTTGGAAGGCGTCGGGTCGTGAC
GAGGGAGAAAGCGCGATCAGGGGAAGCTGCTGCGGTGGGGGCGTCGCTGA
CAGCGATGGAGCCGGCGGGGGGGGGTCTGGCAGCAAGCCTTCCGTGGCGG
GGCCTGAAAAGCGGCTGCCGCCGGAGGGAGAGGAGCTCGATGATAAGGAG
GTCCCCGAGAGAGGTAGGCCTACTAATTAGTAGATTGCGTTGGGTGACAC
AAGATACCACACCCCATGGACCGATTTTCAAAGCCCGATTCTTCCACCAC
GAAGAGGATGCACAAATGAAGCGGTACGGTTTCGGAAAGCTCTCAACGGG
ACGGCTTCAACGCCGCCGTTTTCGCCAATGCCGTCCTTGCCGCTGTTTAG
ATCGAGCGTTGAAGGTCGGTCCAGGGTGCTTGATAACTCATGTCACCTGC
GGTTGCGTGTCGTATGTGTGGCTCACGGTTTTCATACGGCATGCTCTCGA
GAACAGCGAACGGCCCCTCTTGTTCCCGCCTGTTGAACCAACCACACAGC
GTTCGCACAATCGTCAACAAAGCTCATTTGTGTGCGGGTAGAATGCATTT
TTTTTCCCTTCCACTGACGAGTATCACACAGGGCACGGCGCGTGAGTTTC
GTTCCACTCAGTGCCCAAAACCGTCGAGAAACAAGGCATCGATCTCACTC
AAGAAACGTGCCATTGGCGGGATTTTCCCATCGAATAGGCATGCGCGTGA
ACCAGTCGTCTTTGTCCCTGCGTCCACTTCATTCGACATCCCTTGTGCCC
CCCCCCAACCCTATCCCTACCCCCCCGCGCGGCCAACACATGATAGGAAT
GACCGGAGGACTTTCCGAGCTGTGGTCTTCGGGCGAGTCGTGCATCATAT
GCTTCGGGGAGTACGTCGAGGGCGACGTCTTGTGCCGGCTGCCCTGTCGT
CACACGTACCACGCAGAGGTGCGCCGCTCTTCATCATGAGTGCAGACATG
TGTTTGTGTGTAAGAGTTACATGCGGTCGGATTCCGCTTGTTTTTGGTGC
CTTCTGATTGCGTGCATCGATACCTGGTTGGGCGAGTTAGCCTAATGGTT
TTCTGCTGCTGCCGCTTGTTTTCTTGCGTTACCTCTGACTTCGAGACCAG
CGTTATCGCTGCGTGTTTGGGCGAGATATCGCACTGATTATCTGCTGCTC
TTGTATTGTTGCCTTACCGTCATTGTGCGTGTTATCGCACCCCCGTGTGA
GCGTTTTTTCTATAGCGTATTGTTCCACAACCAGGGAGGTATCACCTCCG
AAGAGGGTGGTTTTGGAAACATCTCGTGGAGGGCTTTCCGCAGAGGTATC
AGTTGGTATTCGCACCCTCCTAGTTTTGGAGAAATACGCTATAGACAAAA
GAAAAACGCTAACACGGGGGTGCGAAAACGCGCACAATTACGGTACTTCT
GACTACAAGAACAGACAGTGCAATCGCTGCTTGTGTGGGTGAGATATCGG
ACTGATTCTCTGCTGCCCCCACTTGCTTTCTTGCCTTCCATCTTACTGCA
TACACAGTAGTGCATCGCTTTGTATTTGGGCGAGTTCACTTTCTTGATCT
TCTGCTGCCCCCGCTTGTTTTCCTCCCTTCACAAGTGTATCGCGGCGTGT
TTGGGCGAGTTTTCGTTTTGATATATGTCTGCAAGCCCTTTGTCGTCTTC
CCCATACCTTCTGACTGCACGCACAGCAGTGCATCGATGCCTGCTTGGGA
CAACTTGACGTGGTTTATGAATCCTGATTCTCCGCTGCTCCTTTTTCCCG
TTGCCTTCCTTCTGACTGCATGCACAGCAGTGCATCGATGCCTCCTTGGG
ACAACTTCACGTGGTTTATGAATCCTGATTCTCCGCTGCTCCTTTTTCCC
GTTGCCTTCCTTCTGACTGCATGCACAGTGCATAGACGCCTGGTTGGACG
GCCCAGGCCATTCCTGGTGCCCCCTGTGCAAGTCCAGCCTCCTGCCCCCG
TCGGAGCCTCGAAACAGCTCCGACAACGACGAGATCGACGGCGCCGGTGG
CACCAACGCTACCACCACAAGCGGTGACAGCAACGCCGAATGGTTAGGCT
CCCCCGCCCCCGCCGCCGGCGCAGCAACCGTCGGAGACGAAGCCGTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:121257..125906-

>mRNA_Ecto-sp6_S_contig87.17788.1 ID=mRNA_Ecto-sp6_S_contig87.17788.1|Name=mRNA_Ecto-sp6_S_contig87.17788.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1578bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:121257..125906- (Ectocarpus species6 EcLAC_371)
ATGTCCGGTCGGACGATGCCCTTCCAGTTCCACACGCGCCGACCTTCGGC
CGTGGTTCGCCAGTCCGGCCCGGGGAGATCGACCCTGCACGTCGACTTGG
CCGCCGGCGGCGGCGCAACCACAGCAGCAGCAGGAGCAGCAGCGGGCGGC
GCCGGCAGGGGCAGGGGGGCCGGCGGTTGGAGGGGGAGGAGGGGATGGTG
GGGGTCCAGCCGCCGGCTTCCGGACTTCCTCGAGTTTTGGGGCTTTGCGA
CGCCGGTTTCCGAGGACGAGAGATTGCGGAGGGAACGCGAGCGTCGTGAG
CGTAGTCATCGCCGCCGTGGACTCGCTGGGTCGTGCGTGCGGTCGCCGGA
GTTTTCGATCTTCGTCCTGGGGCTGGCCTCGCTGCTGGCCTTCATCGTGT
TCATCTGCGACATGATCACCGGCCGGAGGTTGAGGCCGACTTCGGTCCTG
GTCTTCGTCGCAGCGGGCACCTACTGCCTCGCCCTAATCAAGCAGCAGCG
GGACCTCGCAGCCTCGGAGCAAGCGCTCGTGATCGAAATCATGGACGGCT
CGGCAACCAGCTCTTCTCGGCGGGTGATCAGCAAAGAGGACCGGCGAAAC
CTGTTCGACTACTTCACGTTCCGACCGTCTTCCTCCACCAACAAGGGGGT
TCGGACAGCGGCGACGGCGACTCAAACAGATAAAGATGTTGAAGTGAGCG
CCATGGAGCAGGGGACGGCTGCGCCTACGGCGGCGGCGGCAGCGACGGCG
GCAGCAGCGGATGACGATGGCGAGGTCAGCGGCGGCGGAATCAGGAGCGA
CCGCGAGGATGAAGCTGGGTCACCGCGGCCTTGTTCTTTGCCGTCGCCTT
TGGGGCTTTCCGCGCCGACCCGTGGGCCGCGGGGGGCGGGTTCTGATACC
GCTGCGCCCCCTTCTCCGGTGCAGCCACGCGCAACTCCGCCAGTGTCGCC
CTCGGCTCTGGCGCTGGCGGGCACCCTGCAAGGGGAAGGAGCGGCGGCGG
CGGTCGGTGGTGTTGCTGACGACGGGACGGCGGAGGTTCTTGGGGGGGTT
GAGGTGGCGTCGGGTCGTGACGAGGGAGAAAGCGCGATCAGGGGAAGCTG
CTGCGGTGGGGGCGTCGCTGACAGCGATGGAGCCGGCGGGGGGGGGTCTG
GCAGCAAGCCTTCCGTGGCGGGGCCTGAAAAGCGGCTGCCGCCGGAGGGA
GAGGAGCTCGATGATAAGGAGGTCCCCGAGAGAGGAATGACCGGAGGACT
TTCCGAGCTGTGGTCTTCGGGCGAGTCGTGCATCATATGCTTCGGGGAGT
ACGTCGAGGGCGACGTCTTGTGCCGGCTGCCCTGTCGTCACACGTACCAC
GCAGAGTGCATAGACGCCTGGTTGGACGGCCCAGGCCATTCCTGGTGCCC
CCTGTGCAAGTCCAGCCTCCTGCCCCCGTCGGAGCCTCGAAACAGCTCCG
ACAACGACGAGATCGACGGCGCCGGTGGCACCAACGCTACCACCACAAGC
GGTGACAGCAACGCCGAATGGTTAGGCTCCCCCGCCCCCGCCGCCGGCGC
AGCAACCGTCGGAGACGAAGCCGTGTGA
back to top