mRNA_Ecto-sp6_S_contig87.17780.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig87.17780.1
Unique NamemRNA_Ecto-sp6_S_contig87.17780.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig87.17780.1 vs. uniprot
Match: D8LQX4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX4_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 2.830e-92
Identity = 273/301 (90.70%), Postives = 275/301 (91.36%), Query Frame = 1 
Query:   13 AGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPAGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKRNVMGWGALESVYLARTPGDRPFTAAAVDGDDEWEQEAMSEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPAWTENNXXXXXXXAKAGVRGLACRAEWKRHGSGGQRSRTVTATMLRR 915
            AGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPAGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SKRNVMGW ALESVYLARTPGDRPFTAAAVD D+EWEQEAMSEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSG             XXXXXXXXXXXXXXXXXXX   RAPAWTEN+       AKAGVRGLACRAEWKRHGSGGQRSRTVTATMLRR
Sbjct:  116 AGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPAGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKRNVMGWRALESVYLARTPGDRPFTAAAVDCDNEWEQEAMSEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGGGMGVSALNKRQQXXXXXXXXXXXXXXXXXXXGT-RAPAWTENSRGAAAAAAKAGVRGLACRAEWKRHGSGGQRSRTVTATMLRR 415
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BLAST of mRNA_Ecto-sp6_S_contig87.17780.1 vs. uniprot
Match: A0A6H5KTN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN1_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 1.510e-89
Identity = 282/307 (91.86%), Postives = 287/307 (93.49%), Query Frame = 1 
Query:    1 MLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPAGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKRNVMGWGALESVYLARTPGDRPFTAAAVDGDDEWEQEAMSEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPAWTENNXXXXXXX--AKAGVRGLACRAEWKRHGSGGQRSRTVTATMLRR 915
            MLLEAGADVEAVNPNGRTPLHLAAAEGNCS ARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAP GSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKRNV+GWGALESVYLARTPGDRPF AA VD DDEWEQ++M+EEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSG        XXXXXXXXXXXXXXXXXXXXXX     RAPAWTEN+XXXXXXX  AKAGVRGLACRAEWKRHGSGGQRSRTVTATMLRR
Sbjct:  230 MLLEAGADVEAVNPNGRTPLHLAAAEGNCSTARLLLEAGARPAPPCRYDXXXXXXXXXXXXXXXXXXXXXXXXAPVGSVKPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKRNVLGWGALESVYLARTPGDRPFAAAVVDCDDEWEQQSMNEEELEQRHLQNIAFLLYRAPGSGARARSWRWPRRSGGGMGFAALXXXXXXXXXXXXXXXXXXXXXXT----RAPAWTENSXXXXXXXXXAKAGVRGLACRAEWKRHGSGGQRSRTVTATMLRR 532
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig87.17780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQX4_ECTSI2.830e-9290.70Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KTN1_9PHAE1.510e-8991.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig87contigEcto-sp6_S_contig87:66826..68295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score288.9
Seed ortholog evalue2.8e-75
Seed eggNOG ortholog2880.D8LQX4
Model size918
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-07_001930.1
Cds size918
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350493.6931481-CDS-Ecto-sp6_S_contig87:66825..670061682350493.6931481-CDS-Ecto-sp6_S_contig87:66825..67006Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 66826..67006 +
1682350493.7055085-CDS-Ecto-sp6_S_contig87:67558..682951682350493.7055085-CDS-Ecto-sp6_S_contig87:67558..68295Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig87 67559..68295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig87.17780.1prot_Ecto-sp6_S_contig87.17780.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig87 66826..68295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig87.17780.1

>prot_Ecto-sp6_S_contig87.17780.1 ID=prot_Ecto-sp6_S_contig87.17780.1|Name=mRNA_Ecto-sp6_S_contig87.17780.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=306bp
MLLEAGADVEAVNPNGRTPLHLAAAEGNCSAARLLLEAGARPAPPCRYDG
STPLHCAAERGHYEIAELLVKAGAPAGSVKPNGTTPLHMAAQGNNSCVLR
LLVRAGAPLNPENRHGSTPLMTAAAHGNARALSALVSAGADTSKRNVMGW
GALESVYLARTPGDRPFTAAAVDGDDEWEQEAMSEEELEQRHLQNIAFLL
YRAPGSGARARSWRWPRRSGGGMGVAALNKRRRQQQQQQQQQQQQQEKQE
KQKGARAPAWTENNRGAAAAAAKAGVRGLACRAEWKRHGSGGQRSRTVTA
TMLRRA
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mRNA from alignment at Ecto-sp6_S_contig87:66826..68295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig87.17780.1 ID=mRNA_Ecto-sp6_S_contig87.17780.1|Name=mRNA_Ecto-sp6_S_contig87.17780.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1470bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:66826..68295+ (Ectocarpus species6 EcLAC_371)
ATGCTCCTGGAAGCGGGCGCCGATGTCGAGGCCGTCAACCCGAACGGGAG
GACTCCCCTGCACCTCGCGGCAGCGGAGGGGAACTGTTCCGCCGCCCGGC
TTCTCCTCGAGGCGGGCGCGCGGCCGGCGCCGCCGTGCCGATACGACGGT
TCGACGCCGCTTCACTGCGCCGCCGAGAGAGGTGGGTGCGTATCTGCTCT
TGTGAGCGTATTATTTGTTTGAACCAACCCGAGCAAGCCCGGCCTCTCGC
CAGCGAACAATCAGAGCGACTAAACGGTGTGTGTGCTTGTGTGCCACAGG
AACATGTATTCTTGGCCTCCTGGTGGGTGATGGGTGCATTGCACGACGGT
AAACTTGGACGCCGTGCGGTGGGGGTGCGGATCTCGCAGCGGAGGCTATT
TTGTATGGTATTTATTATCCTGCCTTGTGTGGGTGAAGACCTGACCTTTC
GTGGCGGGCAGGCGTCCTGTAGAATGTAGTGCTTTTCGAGCAGGGCGATT
GTTGGTCTTTGGGTTGGCCTGAGGCCGAAGCACATAAACACACAACCTTT
GTCTTCCGGTCGTTGTCTTGTACACGAGAACGCGACACCAGTTGCCTCTG
CTGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTACGCAAA
GCGGGAGGTTATTGCAGGCCTCGTGCCGTTCGACGGCTGACTCGGTCGCT
TATACCCGTCTTCCCCCCCCCCCCGTCTTCCAGGACACTACGAGATTGCC
GAGCTTCTCGTGAAGGCCGGGGCGCCAGCGGGCTCCGTCAAGCCCAACGG
CACCACTCCCCTGCACATGGCTGCGCAGGGAAACAACTCCTGCGTGCTCC
GGCTCTTGGTGCGCGCGGGGGCCCCGCTGAACCCCGAGAACCGTCATGGG
TCCACCCCGCTCATGACGGCGGCAGCGCACGGCAACGCGAGGGCCTTGAG
CGCACTGGTTTCGGCGGGCGCGGACACCTCGAAGCGCAACGTGATGGGCT
GGGGGGCGCTGGAGAGTGTCTACCTCGCCCGGACCCCAGGAGACCGGCCT
TTCACTGCTGCTGCTGTTGATGGTGACGACGAGTGGGAACAAGAGGCTAT
GAGCGAGGAAGAACTGGAGCAGAGGCACCTGCAGAATATCGCGTTCTTGC
TGTACCGGGCTCCCGGGTCGGGTGCGAGGGCGAGGTCCTGGCGCTGGCCC
AGGAGGAGCGGCGGCGGCATGGGGGTCGCCGCTCTCAACAAGCGGCGGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGAAGCAAG
AGAAGCAGAAAGGGGCGAGGGCACCGGCGTGGACTGAAAACAATCGTGGT
GCTGCTGCTGCGGCGGCAAAGGCGGGAGTGAGAGGCTTGGCGTGCCGGGC
GGAATGGAAGCGTCACGGGAGCGGCGGGCAGAGGTCGAGGACTGTGACGG
CGACCATGTTAAGGCGAGCT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig87:66826..68295+

>mRNA_Ecto-sp6_S_contig87.17780.1 ID=mRNA_Ecto-sp6_S_contig87.17780.1|Name=mRNA_Ecto-sp6_S_contig87.17780.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp6_S_contig87:66826..68295+ (Ectocarpus species6 EcLAC_371)
ATGCTCCTGGAAGCGGGCGCCGATGTCGAGGCCGTCAACCCGAACGGGAG
GACTCCCCTGCACCTCGCGGCAGCGGAGGGGAACTGTTCCGCCGCCCGGC
TTCTCCTCGAGGCGGGCGCGCGGCCGGCGCCGCCGTGCCGATACGACGGT
TCGACGCCGCTTCACTGCGCCGCCGAGAGAGGACACTACGAGATTGCCGA
GCTTCTCGTGAAGGCCGGGGCGCCAGCGGGCTCCGTCAAGCCCAACGGCA
CCACTCCCCTGCACATGGCTGCGCAGGGAAACAACTCCTGCGTGCTCCGG
CTCTTGGTGCGCGCGGGGGCCCCGCTGAACCCCGAGAACCGTCATGGGTC
CACCCCGCTCATGACGGCGGCAGCGCACGGCAACGCGAGGGCCTTGAGCG
CACTGGTTTCGGCGGGCGCGGACACCTCGAAGCGCAACGTGATGGGCTGG
GGGGCGCTGGAGAGTGTCTACCTCGCCCGGACCCCAGGAGACCGGCCTTT
CACTGCTGCTGCTGTTGATGGTGACGACGAGTGGGAACAAGAGGCTATGA
GCGAGGAAGAACTGGAGCAGAGGCACCTGCAGAATATCGCGTTCTTGCTG
TACCGGGCTCCCGGGTCGGGTGCGAGGGCGAGGTCCTGGCGCTGGCCCAG
GAGGAGCGGCGGCGGCATGGGGGTCGCCGCTCTCAACAAGCGGCGGCGGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGAAGCAAGAG
AAGCAGAAAGGGGCGAGGGCACCGGCGTGGACTGAAAACAATCGTGGTGC
TGCTGCTGCGGCGGCAAAGGCGGGAGTGAGAGGCTTGGCGTGCCGGGCGG
AATGGAAGCGTCACGGGAGCGGCGGGCAGAGGTCGAGGACTGTGACGGCG
ACCATGTTAAGGCGAGCT
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