mRNA_Ecto-sp6_S_contig86.17730.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17730.1
Unique NamemRNA_Ecto-sp6_S_contig86.17730.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: D7G1H6_ECTSI (cwf21 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H6_ECTSI)

HSP 1 Score: 327 bits (837), Expect = 7.020e-100
Identity = 249/259 (96.14%), Postives = 249/259 (96.14%), Query Frame = 1 
Query:  112 RGQAGSDMYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGAGGG-TGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAERDSMMAKRAERFGASANERR 885
            RGQAGSDMYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKG        G MDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAERDSMMAKRAERFGASANE R
Sbjct:   25 RGQAGSDMYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGXXXXXXXAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAERDSMMAKRAERFGASANEPR 283
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: A0A6H5KXT9_9PHAE (cwf21 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT9_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.220e-99
Identity = 246/251 (98.01%), Postives = 246/251 (98.01%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAERDSMMAKRAERFGASANERR 885
            MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASL KGKKG GAGGG G MDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAERDSMMAKRAERFGASANE R
Sbjct:    1 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLPKGKKGTGAGGGAGTMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAERDSMMAKRAERFGASANEPR 251
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: A0A836CB89_9STRA (cwf21 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB89_9STRA)

HSP 1 Score: 152 bits (383), Expect = 5.530e-36
Identity = 95/173 (54.91%), Postives = 114/173 (65.90%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNT---GKLQARDWEEPPP--RKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 636
            MYN +G+ TPRGSGTSGHVMSNRSHV+A   R  + RN    G  QA  W  P    +KAN+ELL+H R+RKVEAKIFELQEAMA+RGYSDA+IE KVAEVR+ L+ R        L +  KG G         +H+    KA +N RMR+AFGLG DY  GE+FD E Q +K
Sbjct:    1 MYNGIGLTTPRGSGTSGHVMSNRSHVKADRMRERMGRNQTVGGSDQA--WAHPQGALKKANDELLEHARRRKVEAKIFELQEAMAERGYSDADIEAKVAEVRRELDVRTSQQDVPGLPE--KGSG---------THVEHAHKAQENERMRDAFGLGKDYTEGESFDHELQAKK 160
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: A0A7S3Y519_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y519_HETAK)

HSP 1 Score: 112 bits (280), Expect = 5.090e-25
Identity = 66/165 (40.00%), Postives = 99/165 (60.00%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQ 627
            MYN +G+ T RGS T+G+V  N SHVR Q  R  + +N G LQ  DW+ P  ++AN+ +L+HQ+KR++EAK+FELQ  + D G ++ EI++K   +RK L     S +   + +G              +H R   K +++RR+R AFG+ +D+ AG AFD E Q
Sbjct:    1 MYNGIGLATVRGSSTNGYVQRNLSHVRTQQVRNQVAQNKGGLQ--DWDAPKQKQANKAILEHQQKRQIEAKVFELQVQLEDEGLNEEEIDKKCQALRKKLNS---SAKPQQIHEG-------------GTHARAALKEEEDRRLRAAFGIREDFVAGAAFDPELQ 147
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: A0A7R9UG21_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG21_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.450e-23
Identity = 68/169 (40.24%), Postives = 102/169 (60.36%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPR-KANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 636
            MY NVG++T RGSGT+G+V  NR ++R Q FR  +  NT      D    P R +A+ ELL+H RKR +EAK+FE +  + D G  D +IEE++ ++R  LE    SG + S            G+   +SH+R  +KA + RR+++AF + +DY  G+AFD EA+E++
Sbjct:    1 MYGNVGLKTARGSGTNGYVQRNRGYLRPQKFRARVRDNTQATPFSDPISAPLRAEADAELLEHSRKRAIEAKLFEERVRLEDDGLEDEKIEERLKKMRASLERS--SGARGSF-----------GSEGTNSHVRAARKAQERRRLKDAFRIREDYVEGQAFDREAREQE 156
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: G4Z8N6_PHYSP (cwf21 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z8N6_PHYSP)

HSP 1 Score: 103 bits (257), Expect = 4.900e-21
Identity = 70/180 (38.89%), Postives = 99/180 (55.00%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWE-------EPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGL-----EEREGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 636
            MYN +G+RT RGSGT+G+V  N S+V A   R  + RN     + D+         PPP   N ++L H++KRKVE ++ E+   M DRG    EI+EKV   R+ L     E  +  G+KA                A  SH R  +K ++N+R+++AFG+  DY AGE+FD EAQER+
Sbjct:    1 MYNGIGLRTVRGSGTNGYVQRNLSYVNASRTRQTLARNQRGGASGDFGAHRGGKGRPPP---NADILLHEQKRKVELQLLEISLEMEDRGCDPEEIQEKVKRERERLLARLNEASDRGGEKAK--------------DAESSHARQKRKEEENKRIKDAFGIATDYVAGESFDPEAQERR 163
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: A0A4D9CSM3_9STRA (cwf21 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSM3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.700e-20
Identity = 64/169 (37.87%), Postives = 104/169 (61.54%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARD-WEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 636
            MYN +G++T RGS TSG+V  NR +V  +  R      +G    +D ++     KAN+E+L+H+RKR++EA+++E++E M D+GYS++EI++K   +R+ L+     G   +L+   K G   GG+   D+H    +KA +  R+R AFG+  D+  GE +D EAQ R+
Sbjct:    1 MYNGIGLQTARGSATSGYVTKNRGYVPPRRVRQETALVSGHGGPQDTFKAAVLAKANQEILEHKRKRQIEAQVYEMEERMRDQGYSESEIKDKATALRERLK-----GNNLALVAANKTGS--GGSEMTDTHEVAARKAQEIERLRNAFGIAQDHVEGETWDPEAQNRR 162
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: A3KNE2_XENLA (cwf21 domain-containing protein (Fragment) n=1 Tax=Xenopus laevis TaxID=8355 RepID=A3KNE2_XENLA)

HSP 1 Score: 99.0 bits (245), Expect = 5.290e-20
Identity = 65/167 (38.92%), Postives = 92/167 (55.09%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEER------EGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFD 615
            MYN +G+ TPRGSGT+G+V  N S VR +  R        + + +  E    +K N+++LDH+RKRKVE K  EL+E MA++GY+DAEI+EKVA  R  L+E+      E   QKA++                ++H         N R+R AFG+ D Y  G +FD
Sbjct:    1 MYNGIGLTTPRGSGTNGYVQRNLSSVRHKKDRTDYK---SEEELKKLENLLMKKPNQDILDHERKRKVELKCLELEEMMAEQGYNDAEIQEKVATFRLMLQEKDLTQIKEEEKQKANV---------------SETHQMAEANEKKNERLRAAFGISDSYVDGSSFD 149
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: A0A674HKV0_TAEGU (cwf21 domain-containing protein n=1 Tax=Taeniopygia guttata TaxID=59729 RepID=A0A674HKV0_TAEGU)

HSP 1 Score: 96.3 bits (238), Expect = 5.270e-19
Identity = 65/162 (40.12%), Postives = 85/162 (52.47%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEER-EGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFD 615
            MYN +G+ TPRGSGT+G+V  N S +R +    G D   G+ + R  E    +K N ++LDHQRKR+VE K  EL E M ++GYS  EIE KVA  R  L E+ EG G                   A ++H         N R+R AFG+ D Y  G AF+
Sbjct:    1 MYNGIGLPTPRGSGTNGYVQRNLSALRPKKGGAGADPPPGEEELRRLEAALAKKPNADILDHQRKRRVELKCLELAELMEEQGYSAEEIEAKVATFRTMLLEKDEGPGDPEQKPT------------ATETHQLAEANERKNERLRAAFGISDSYVDGSAFE 150
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BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Match: A0A225WFR0_9STRA (cwf21 domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WFR0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.420e-19
Identity = 68/172 (39.53%), Postives = 97/172 (56.40%), Query Frame = 1 
Query:  133 MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRN----TGKLQARDWEEPPPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGLEEREGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGLGDDYAAGEAFDEEAQERK 636
            MYN +G+RT RGSGT+G+V  N S+V A   R  + RN         AR  +  PP   N E+L H++KRKVE ++ E+   M +RG    EI+EKV   R+ L  R  +G KA   K +             SH R  +K ++N+R+++AFG+  DY AGE+FD E QE++
Sbjct:    1 MYNGIGLRTVRGSGTNGYVQRNLSYVNASRSRQTLARNQRGGASDFNARGGKSRPP--PNAEILLHEQKRKVEVQLLEMSLEMEERGCDPEEIQEKVKRERERLLARL-NGAKAEKSKDE------------SSHARQRRKEEENKRIKDAFGITTDYVAGESFDPEMQEKR 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1H6_ECTSI7.020e-10096.14cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KXT9_9PHAE2.220e-9998.01cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CB89_9STRA5.530e-3654.91cwf21 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S3Y519_HETAK5.090e-2540.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9UG21_9STRA3.450e-2340.24Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
G4Z8N6_PHYSP4.900e-2138.89cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A4D9CSM3_9STRA3.700e-2037.87cwf21 domain-containing protein n=2 Tax=Monodopsid... [more]
A3KNE2_XENLA5.290e-2038.92cwf21 domain-containing protein (Fragment) n=1 Tax... [more]
A0A674HKV0_TAEGU5.270e-1940.12cwf21 domain-containing protein n=1 Tax=Taeniopygi... [more]
A0A225WFR0_9STRA6.420e-1939.53cwf21 domain-containing protein n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:201582..209635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score315.1
Seed ortholog evalue3.1e-83
Seed eggNOG ortholog2880.D7G1H6
Model size2086
KEGG koko:K06110,ko:K13172
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008380,GO:0008469,GO:0008757,GO:0009889,GO:0009909,GO:0009987,GO:0010219,GO:0010220,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016071,GO:0016273,GO:0016274,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019918,GO:0031323,GO:0031326,GO:0032259,GO:0032991,GO:0034641,GO:0034969,GO:0035246,GO:0035247,GO:0036211,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043985,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0048580,GO:0048583,GO:0048584,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051239,GO:0051252,GO:0051276,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1903506,GO:1990904,GO:2000026,GO:2000112,GO:2000241,GO:2001141
Exons9
EggNOG free text desc.RNA splicing
EggNOG OGsKOG1869@1,KOG1869@2759
Cds size771
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17730.1prot_Ecto-sp6_S_contig86.17730.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 202765..208320 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350488.0750802-UTR-Ecto-sp6_S_contig86:201581..2027641682350488.0750802-UTR-Ecto-sp6_S_contig86:201581..202764Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 201582..202764 -
1682350488.1686451-UTR-Ecto-sp6_S_contig86:208320..2084101682350488.1686451-UTR-Ecto-sp6_S_contig86:208320..208410Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 208321..208410 -
1682350488.177834-UTR-Ecto-sp6_S_contig86:209593..2096351682350488.177834-UTR-Ecto-sp6_S_contig86:209593..209635Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig86 209594..209635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350488.087198-CDS-Ecto-sp6_S_contig86:202764..2027891682350488.087198-CDS-Ecto-sp6_S_contig86:202764..202789Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 202765..202789 -
1682350488.0971873-CDS-Ecto-sp6_S_contig86:203748..2037801682350488.0971873-CDS-Ecto-sp6_S_contig86:203748..203780Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 203749..203780 -
1682350488.107505-CDS-Ecto-sp6_S_contig86:204142..2042261682350488.107505-CDS-Ecto-sp6_S_contig86:204142..204226Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 204143..204226 -
1682350488.1174862-CDS-Ecto-sp6_S_contig86:205110..2052191682350488.1174862-CDS-Ecto-sp6_S_contig86:205110..205219Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 205111..205219 -
1682350488.1272197-CDS-Ecto-sp6_S_contig86:205793..2060381682350488.1272197-CDS-Ecto-sp6_S_contig86:205793..206038Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 205794..206038 -
1682350488.1370184-CDS-Ecto-sp6_S_contig86:206593..2066681682350488.1370184-CDS-Ecto-sp6_S_contig86:206593..206668Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 206594..206668 -
1682350488.1466012-CDS-Ecto-sp6_S_contig86:207771..2079011682350488.1466012-CDS-Ecto-sp6_S_contig86:207771..207901Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 207772..207901 -
1682350488.1564584-CDS-Ecto-sp6_S_contig86:208249..2083201682350488.1564584-CDS-Ecto-sp6_S_contig86:208249..208320Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 208250..208320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17730.1

>prot_Ecto-sp6_S_contig86.17730.1 ID=prot_Ecto-sp6_S_contig86.17730.1|Name=mRNA_Ecto-sp6_S_contig86.17730.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=257bp
MYNNVGIRTPRGSGTSGHVMSNRSHVRAQAFRMGIDRNTGKLQARDWEEP
PPRKANEELLDHQRKRKVEAKIFELQEAMADRGYSDAEIEEKVAEVRKGL
EEREGSGQKASLLKGKKGGGAGGGTGAMDSHMRDVKKADDNRRMREAFGL
GDDYAAGEAFDEEAQERKKEARRKEREAKDKEWEEKKAAKKAEEKKEKRR
REKAGSDDDQDGQERGARKGGSRRGDSQEAERDSMMAKRAERFGASANER
RRRREG*
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mRNA from alignment at Ecto-sp6_S_contig86:201582..209635-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17730.1 ID=mRNA_Ecto-sp6_S_contig86.17730.1|Name=mRNA_Ecto-sp6_S_contig86.17730.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8054bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:201582..209635- (Ectocarpus species6 EcLAC_371)
CCACGATCTGTCCTATCCTACTCTCTACCCCGCAGGATCGAGGTGAGCTC
GTCACTCAGATCAGCATGCAATATGTGATGGGCCTGGTGCAGAAGTGCGC
GCTCGATTGTAACGCATTCCTATGGCAGACGTTTTGTTTCAAGTGTGTGC
GGCGTGATGTGTGGGCTTGCGGGGGGGTACTGCTGCAGGTAGTTCCCCAA
GAGATGCGTAGCGGAGGGCCGCCACTCTGCCTGCCGTCGTCACCACGCAT
GCACCGTCTTATGGCGTATCGGCATGGCTTGGGTGGAGCTTGTGGTTGGC
TTGGGTGTTTCGTGCATCCGTTGCTGTGCTCGCGTTTTTTCTGCGCGCAA
ATCCTCTTTCGCCGCAGCTGCTGGGCCCCAGACCGTTGTTGACTGTTGAC
CCCCCCCCTGGACTTGTTGCAGCTTGTTGCAACTTGTTGGTGAAAGCCTT
TGCGTGTTCAGGCTACACAGCTTGTTTATCGAAGCCATGTGCAGTTAAAT
ATTCAGTCGTGGTTGCGTATTGCGCAACCCGATCTTTATTCTGGAAGGAG
AGCAACGGTCTGTTTTTGGATGGAATTGTGTGTTGCATTACTGCTGTTGT
ATTCTGATGACATCTGCTCTCCTTGCGGTTCGGGCGTCGAGAGGGCTGGT
CTCCGTACCGCTTGCAACGGCAGCTACAAGGTGCTTCATGCTACTAAACA
AGGATCGCCGTCGGAACAAGCTGGCGAATGTGCCGGTTTCATGGTTGCGA
AGAACAACGTGAATTTTTTGTGTAGTGTGTCGAGAAACGCATATCATCAA
CAGAGACGTTGTGGGTGCGGGCATCACACCGCACGCGGCCCAACCCTCGT
ACGGGGTGGATACCATAAGAAAAGCTTGCTCAAAGACACCTGTATGTACA
CCATACCTGGACCAAATTTTCGAAACTCGAATACTCCACGACGTAGAACA
TGCCAAAGTCAAGAGATGTTCTCTCGGAAAGCTCTCGACGAGACGGTTCA
AACGCCGCCATTGTAGGCACTTTTGCGTTACGTGCTGCAGAGTAATCGGG
CTGTGAAAATCGGTCCAGGGGATATAATATCTTACGCAACCGAAGGTAGT
TGCATGCCGGACATAGAGGCACGTCGTTCGCCTCTTGAAACAACACTCCC
GGAGCACGATTACAATATGCGCTGACATGCGCCGCCTTATGCCTTCTTCC
CGCTTCGCATTTTTTTGCCGTTCAGGCGTGAACAAGCGCAGCACCACCAC
CGGCAGCAGCAGCACCAGCCCACCGAACCCACCCGCGGAGCGGCAGGGGT
CAGGCAGGCAGCGACATGTACAACAACGTCGGGATCAGGACCCCTCGCGG
CTCGGGCACAAGTGGCCATGTCATGTCCAATAGAAGGTACACTCTCTGGA
CAAATAGTTATCGTGTTGGGACTGGACTAGCGTTTTGTATCGAGGCCAAC
AGCAGCAGTGCTAAATAGCGCCTCCCGAGTGGACGCAGTTGCTCCCACAT
AAACGGTAGTCTTCGCTTGCACACTGCAGCAGGCACCCCTCGCGCCCGGG
ATCTGTGCTGGAACACGGCTGCAGCAACAAAATTGAGCTCGGATACCGCA
CGCCCAGGATCTGTGCTGAATCATTACTGGGACAACAAAAATATCGAGCT
CGGAACCCTGCCGCCTCTTGTGCCCTGCCCCTCGTCTCTTATTTTGTTTG
CGTTCCCGCACACAACGAACGGCGAAACAAACAGCCACGTGCGCGCGCAG
GCGTTTCGCATGGGGATAGACCGCAACACCGGGAAGCTGCAGGCCCGTGA
CTGGGAGGAGCCACCGCCGCGAAAGGCCAACGAGGAGCTGCTAGACCACC
AACGCAAGCGCAAGGTGTGTGTGGGTTGTTTTTGGCGTTCAAAAGTTTTC
TGTGGTCCACTACCCTAATAGATAGTCGTTGCCGTTGTTCAGTGCTCCTC
TTGGCCGTTTCCGTTTGTGCTGGTTGTTGCGCGCGCTCGTCTTTGTTTTT
GCACTGTCAGAGGAGTTATGTATTGTTCGAGAGGTGAATGTTCTGCTACC
CACAGCAACCGCAGTAGTTCGTCAGTTGGGTGTTGTTTGGTACCTGCGGC
TTGATTCGTCGTCGACATTTTCCGCGATTTCCGCTCGGTCGATTTTTTTG
TCGGTTTGGCTCTTCGTGCTCGGGTTGATTTTCTGCGCGGCTTTGTGTTC
TGCGCTCAGAGGAGGTACAGAGGAGGTACAGAGGAGGGGTGAACGTTCTG
CTAACTACAGCAATCGCAGCAGTTCGGCCATCGGGTGTTATTTGGTACCT
GCCGCTTGGCTCGTCGTGGATATTTGCCACGATTTCCGCTCGGGCGTTGT
GTCGGTGTCGCTCTGCATGTTCGGCTTTTTTTTTGCGCCCAAAGGAGTCA
TTGTTTGAGAGGCGAACGTCCTGCTAACCAGCGGTCTCAGCAGAAGTTAT
TTTTTCGTGGAGTATGCATTTCTACCGCTTGTATCGGCTGTGCCATGAAA
GTCGCTCTGGCGGCAGCTTGTTTCGACGTCATGGCATTCCTCTTGTGCCA
CCTGTACTCTCGTCGGTCTCCTTTTCGACTACGGCTGCGGGCAGCACTCC
GCCACCGTCTTCCGTGGTGTTAAACTTGTCGGTGCTGATTTTTGTTTGTT
ACTTTTCCGTCGATGGGTCTCTCATATGCGCTTCTCTGGATTTTTTTAGA
GGTGGCCTACCCCGCTGAATGTCGCGCCAGTGGGGCGCCCTCTGCGGTGC
TCGCTCCTTGTTTGGGACGCCCTTCGCTACCAGCTACGCTCGCATTTAGT
TGTTGGGATAATTTTTGTGCGGCCACTTTACCTAACTTTTCCGCGGGAGC
TGTTGTGTTTTGTTTTCTCTATTGGTTGCTGTTGATGTGGAGAGGCGTTT
TTAACCGAGCCATGAACGCTGCGCGTGTCTGCTGTGCGCGTGTTTTTTTT
CTCGCCGTCCGGCTAAGGTGGAAGCCAAGATCTTCGAGCTGCAGGAGGCG
ATGGCCGACCGTGGCTACAGCGACGCCGAGATTGAGGAAAAGGTAAACAC
AGGAAAATGGTGTTTCCGTGTTATTTTTAGGTTGCTCGGTCTCGCGTGGT
TGGACGAGTGTTGCCACTGCTGCGCGTCGGTGTCCTCCTTTTTGGTCCCT
TAGCCTTGGTTCCCTCCCTCGTGCCACCACGTGGTGCGGCATACGTATTG
TGCATACGTATCCTCGTTGGTTTGGGTTTCTAAGGTGTATGTTCTGCTCC
AAAATCACATGTCTGCTTCTAATCGTGCAGTCAGTAGGTTCCAGGTCGCG
CCATGTTTCTCGAACCCCGGTGTGTTGGGCGCTATTAGCGTTGCTGCTGC
TGCCGCTCCTGTTGTGTTGTTGTCGTTGATGTTGTTGGTGTTGGTGTTGG
TGTTGTTGTTGTTAATGTTGTTGCTGGTGTTGCTGTTATTGTTGCTGCTG
CTGCTTCTGCTGTTGCTGCTGCTGTGGGGGTTGTTGGTTGTTGTTTTGTT
GTCTCCGTCGTTGTTGTCGTGCTTGTAGATGCCGACGTCGCTGTTTCGTG
TCGGCGATGCCGTTGTCTTGTGTCTCGCGTGCCCCTCCGAAATCCAGGTC
GCAGAGGTCCGCAAAGGGCTGGAAGAGCGGGAAGGGAGCGGCCAAAAGGC
GTCCCTGCTCAAGGGCAAGAAAGGCGGCGGCGCCGGCGGCGGAACGGGTG
CCATGGACTCCCACATGCGGGACGTGAAGAAGGCGGACGACAACCGCCGC
ATGAGAGAGGCGTTCGGACTCGGCGATGACTACGCGGCCGGGGAGGCGTT
CGACGAGGAAGCCCAGGAGCGGAAGAAGGAAGCGCGCAGGAAGTGAGTCG
TGTCCTAAGGTGGTAGTGAAATGTTTGGTTGGTATTTGTGTCTGGGGACT
TGGGGGCAATCACCGACGTGTATGGTGTTCGGTTACCAGCAACGTGTTTT
CAGTCAGGTTTTTGTACTAGCCAAGGTTGTACTGAATTGAGTAGTGTGAT
GACGGCGTGGGCTTCAGGAACGTCGATATTTGGAGAGCGTCATGCGTACA
TCGTTCAGGCCCAATGAGGGCGACACGGAGGTCGGTTAGCAGGACTGTTC
AACCCTTTGTTTGCGATCACCAACGAAATGGAATGGAATGACGCCGAAAG
CCGCTGCCCTCTGTTGGCTTTGTTGACGCCTTGCCTTGACTTAGTAGCAA
GATGCCTGTGCATGGTTGAGAAGGCTTTGGGGGAACTTTTCATGCCATGG
ATGAAAAGGATCTCTGTATAAAAGAAATACACGTTGAGCATGACAGCAAC
CGACTCCCATTGTTAAGGAATGTGGGGTCTAATGGTGATCGACGTCTCAC
GCCAGCACTCAGTCTCTCTCTCTCTCTTTTGTTGGCCTGTATGTCGGTCT
CCCTTGTTCTTGTCAGGGAGCGAGAGGCGAAGGACAAGGAATGGGAGGAA
AAAAAAGCGGCAAAGAAGGCGGAGGAGAAGAAGGAGAAACGCCGCCGGGA
AAAGGCCGGGAGCGACGACGATCAGGTGCGGTGTGTAGCTCACTTTCAAA
CAAGCAGCCGTGCTGATGACAGGAGTTGAAAATTTTTGTTTCAGGCGCGA
GGCGAGGCTGTTGCTAGTGTTTCGTTACGAGGAAGTGCTACGGAGGCACC
ACACAGGAATGGCACGACGAGGCATAATGTGGTGTATCTGATGGTATCCC
TTGTGGCTGTGGATGACCGTACGCGTTTTTTCGTCAACAGGCGGAGGGCG
TGGGCATTGTCTCTTGACATCACCACGACATCAAGTTTTAAAGTTTATTT
TTAGCTATAGACGGACATCCTGGTTCTTCGGGTGTGCGTGGAAGTTGTGT
TTTCTTGTTGCCGCTCCCGGTACGTCTGCGTGGCCTGTTCGAACTTGATG
TCATTCAAACTCAATTTTGTTCGCACCCGATCACTCTTTTTGCTGATGTT
GGTGTTTCCACGTAATTGGTGTAATGTCCTCTGGTATACTCTTGGCTACT
CTTCAACAGGAAACAGACCGAATTGCCGTGGTGTTCACAAGCCATAACGA
GGTAGACATGAGATGAAAATACAAACACAGGGGCTGCAACCGCCGAACAC
TCGCGACGAAACGAACGTCTCTGGAATAGAGCAAGTCCAGACAGTCGATG
AAGCGGCGAAGGACAAGGAAGAGTGTGCCGCCCTTTGTTTTGTTTTTTGT
TCTTCTGTTTCTTGGTTCTGTAAGCTTATCGCTGGGTACGGTGCAGCTCA
AACTCGGGTGGACGCCGGGCCCACTTCCTCGCAACGGCACTCTAGGTCCT
TAATGGGCGAGCTCATGTGGGAAACAACAGTGACAACGCCAAAGAACAAG
CAGCAGTTAGCCTCGCGTTCACACCCGTTGTCTTATGTACCACACCGCGA
TATCATCAGGACGGTCAGGAGAGAGGAGCCCGGAAGGGGGGCAGCAGGCG
CGGCGACTCGCAAGAAGCCGAGCGTGACAGCATGATGGCAAAGGTGAGGA
CCGTAATTTTGTCGAGAAAGGATTTCCGCTTTCGGTTCTACACCTTGCTC
TTGCCACCGAGGTGACAATTAAATGATACCCGTTGGAGATATAACCGCAG
TCGAAGGGGACGTGCTGAAGTCTTGACATGGAAGGGAGGGAAAACGGCTG
GAACCTGGGCTTATTTTGAGTCTGTTCCTTTTCGCAGTGGCTCCTACCAT
ATATGCGGAACGCAGGAGCTTCGTTGACTGTACGACCGCGTACACCGTTG
CGTCTCGGCAGGTCTGTTAAATGTGTTGCATGTTCTCCTTCGACCCATCC
TTGGTCCCGCTCCCCTACCCCTCCCGTAAATCGAATGGACCCACCGACTT
GACAGAGAGCCGAGCGGTTCGGCGCCAGCGCTAACGAGCCCAGAGGACCC
TCCAACAACGACCGCAAAGGGCGCGGACAGTTCCGTGCCGGGGGCCCCGG
CAACAAGAACAACGACAAGAGGGCGGGGGGGCGCGACGGCAGGGATGGAG
AAAGAAGGCCCTCGGAGATGAATGTCAAGGATGCTCTGGCGGGGGGGTTG
TCGGCCCCTCGTGGGGGCTCTAGGCGTGACCGGGCTAGAAGCGAAGATGA
AGGCCCGCGGGATGTTGTCATCCACGTGGATGGCGAAGACGGTGGGGGTC
GGGGCCGCCCCAGGGACCGCGGGGAGGGCAGCGGGCGGAACGTCCACGTG
CGCGTCGCCGGGGAAGGGGGCCGGGGGGACTCCGAGGATTCGCGGTACCG
CGGCGACCGGGGCCGGGGGTATGGTGATGACAGTGATGGCGAAGGGTCGG
AGCGCGAGGTTATCGTGGTGACTCAGTCGGGTGTGGACGAGAACGATAGG
TGGCAGGCGGAAGGGAACGGGGTCTTCGCGGAGGATGGTCTGGGGGGGGG
CTCCGCAGCCCCCGCCTCCTCCACTACCACCCCCCACTCCCCCGCTGAAG
ACGACCTTCGCGGAAGGATCAAAGGCCGCGGCCGTCGGGGTGTAGAAAGC
GAGTCCTCCCCCCCTCGAAAGAAGGCCGCTCTCGCTCCCTCTGGCGGAGA
TCTGCGGGAAAGAATTTCCGGTCGGGGGCGCCGTGGCGGTGAGTCCCCGC
CCAAGAAACAGCGCCGCAAACACTCGCCATCCGCCCCGGGAAGCGACGGC
GATGGTACCGGCGGCGCGGGGTCCCCGGCCCGGCCGGCGAAGAGGGCGCC
GCCGGCCGAGGTCGGCAGCGATAAGCGCAAGCGCGACGGGTCTCGGGACA
GCGGCGGGAGGGGCGCCGACAAGTCGCGGGGCGGCGTTGGTAGGTCTGAC
AGGGGGAGAGGTGGAGGAGACAGGAACGGTAGCGGCGGCGGCGGAGGCGG
CGGCGGCGGCGGGAAGGGTGACAGGCGTCGGTCTCGCAGCGAGGAATCTT
CATCCTCCTCTTCGTCTTCATCGTCATCGAGCTCTTCGTCCTCTTCCTCC
TCGTCCTCGTCCTCGTCCTCGTCCTCTTCGTCGTCATCGAGCTCTTCCTC
TTCCTCCTCCTCTTCTTCGGAGTCGCCTGTTCGCTCCTCTAGCAAGCGGT
CCTCCAAGCGGTCCTCCCACCGGAGGTGATGCGATTTCGGTCGCATGTAC
TGGTGAAATTCTCAACACGACTTTTTGGTCATGGCGGGGGCTGGAAATGA
GTATGGTGGGCCAACTCCCCGTGGCTTGAGGCGAGCGAGAAGTGAATAAC
TTGTCTGTTTCCGGACTGCGGTTGTCTAGTGAAGGCCCGCTCCGTCCTAA
ATTGCTCAGGGGATGCGAGGGACTTTTGTGTTGGAGTGCGTGGTGTCCCC
TTTGGTCCTATGTGCATCATCCCCGTCCACCATTCCCCACGGGAAACAAG
CCAAACGGAGGGAGTTCGGCTATTTTAAGTGTAGACATACTCGGAACAAC
GGCGGGGTAGCCCTTCGTGTCTACACAAGTTTCTCTTTTTCATCGTGCTG
TTGAAGATGTTTTCCACCCGGTGCCTTGAGGGTGTTCGAGGCAAACGGGT
TTCTCGACAACAAGGCTTCGTCTAGTTGGGGCGTTGCGGCAGCGCGGGCA
GCAAGAACAGCTGTGGTCTGTGTCTCGTCACCCTAGGCTCCAGAAAAAAG
CATTTGGGGTTCTTGGGGGTAGTGCTCTTGATGCAGGCAGCTGGGGAGGA
GAGGGAAGGGGATGCTAACTGGAGGATGTGTCCATGAGAAGCTTCTGAGT
ATGGTCTCGTTGTCACCGACCGTTGTCGTGTGTTACCTTTGCGAGAGGGC
TGTGTGTGTTGGAGTTGCTACAAGTAGTAGCGGGAAGAGAGGGAGGGTTG
TCAAACTTGTCGTGGGAAGAGAAAGAATACCATCCGTTCAGGGGAGACGT
AAAAATGCGAGCTAGCGGCTTAGAAGTTTGGGTTGGGTGGCTGATGGGGG
CCGAGTCTCCAAAACGATGATTCATGAATTCAGCAAGAGTTGGGCTTCAA
TCGAATGGTCATTTCTGCGCTGTTTTTCCCTGTTCACCTCCCGGCGGGTT
TTCTAACCCCGCGAAGTGACGCCGAGCAGATGCGGACAAAGAACGTCGGG
TCGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:201582..209635-

>mRNA_Ecto-sp6_S_contig86.17730.1 ID=mRNA_Ecto-sp6_S_contig86.17730.1|Name=mRNA_Ecto-sp6_S_contig86.17730.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:201582..209635- (Ectocarpus species6 EcLAC_371)
ATGTACAACAACGTCGGGATCAGGACCCCTCGCGGCTCGGGCACAAGTGG
CCATGTCATGTCCAATAGAAGCCACGTGCGCGCGCAGGCGTTTCGCATGG
GGATAGACCGCAACACCGGGAAGCTGCAGGCCCGTGACTGGGAGGAGCCA
CCGCCGCGAAAGGCCAACGAGGAGCTGCTAGACCACCAACGCAAGCGCAA
GGTGGAAGCCAAGATCTTCGAGCTGCAGGAGGCGATGGCCGACCGTGGCT
ACAGCGACGCCGAGATTGAGGAAAAGGTCGCAGAGGTCCGCAAAGGGCTG
GAAGAGCGGGAAGGGAGCGGCCAAAAGGCGTCCCTGCTCAAGGGCAAGAA
AGGCGGCGGCGCCGGCGGCGGAACGGGTGCCATGGACTCCCACATGCGGG
ACGTGAAGAAGGCGGACGACAACCGCCGCATGAGAGAGGCGTTCGGACTC
GGCGATGACTACGCGGCCGGGGAGGCGTTCGACGAGGAAGCCCAGGAGCG
GAAGAAGGAAGCGCGCAGGAAGGAGCGAGAGGCGAAGGACAAGGAATGGG
AGGAAAAAAAAGCGGCAAAGAAGGCGGAGGAGAAGAAGGAGAAACGCCGC
CGGGAAAAGGCCGGGAGCGACGACGATCAGGACGGTCAGGAGAGAGGAGC
CCGGAAGGGGGGCAGCAGGCGCGGCGACTCGCAAGAAGCCGAGCGTGACA
GCATGATGGCAAAGAGAGCCGAGCGGTTCGGCGCCAGCGCTAACGAGCGG
CGGCGGCGGCGGGAAGGGTGA
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