mRNA_Ecto-sp6_S_contig86.17713.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig86.17713.1
Unique NamemRNA_Ecto-sp6_S_contig86.17713.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig86.17713.1 vs. uniprot
Match: A0A6H5KT30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT30_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.500e-22
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:  346 STRQGFLKAGGLAAAGVIAAMGAVPGTIVEGRGRAVEMAEAAVGVDEPAVLLQKEASPDLEGTSG 540
            STRQGFLKAGGLAAAGVIAAMGAVPGTIVEGRGRA+E AEAA+GVDEPAV  QKEASP+LE TSG
Sbjct:   13 STRQGFLKAGGLAAAGVIAAMGAVPGTIVEGRGRALETAEAAIGVDEPAVF-QKEASPNLELTSG 76
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BLAST of mRNA_Ecto-sp6_S_contig86.17713.1 vs. uniprot
Match: D7G1J0_ECTSI (Choline/ethanolamine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J0_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 7.860e-20
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:  346 STRQGFLKAGGLAAAGVIAAMGAVPGTIVEGRGRAVEMAEAAVGVDEPAVLLQKE 510
            STRQGFLKAGGLAAA VIAAMGAVPGTIVEGRGRAVEM EAAVGVDEPAVLLQKE
Sbjct:   22 STRQGFLKAGGLAAAXVIAAMGAVPGTIVEGRGRAVEMVEAAVGVDEPAVLLQKE 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT30_9PHAE3.500e-2289.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J0_ECTSI7.860e-2096.36Choline/ethanolamine kinase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig86contigEcto-sp6_S_contig86:34369..36078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score97.1
Seed ortholog evalue9.2e-18
Seed eggNOG ortholog2880.D7G1J0
Model size543
KEGG rclassRC00002,RC00017
KEGG koko:K00894
KEGG ReactionR01468
KEGG Pathwayko00564,ko01100,map00564,map01100
KEGG ModuleM00092
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0071704,GO:0071944,GO:0090407,GO:1901576
Exons3
EggNOG free text desc.ethanolamine kinase activity
EggNOG OGsCOG0510@1,KOG4720@2759
Ec32 ortholog descriptioncholine/ethanolamine kinase
Ec32 orthologEc-07_001220.1
EC2.7.1.82
Cds size543
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350486.2113633-CDS-Ecto-sp6_S_contig86:34368..345921682350486.2113633-CDS-Ecto-sp6_S_contig86:34368..34592Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 34369..34592 -
1682350486.222132-CDS-Ecto-sp6_S_contig86:35182..353311682350486.222132-CDS-Ecto-sp6_S_contig86:35182..35331Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 35183..35331 -
1682350486.2310338-CDS-Ecto-sp6_S_contig86:35908..360781682350486.2310338-CDS-Ecto-sp6_S_contig86:35908..36078Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig86 35909..36078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig86.17713.1prot_Ecto-sp6_S_contig86.17713.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig86 34369..36078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig86.17713.1

>prot_Ecto-sp6_S_contig86.17713.1 ID=prot_Ecto-sp6_S_contig86.17713.1|Name=mRNA_Ecto-sp6_S_contig86.17713.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=181bp
QVLAAAAVLVHLPACLVRGYTAIPPPSLPRGGLSERAAGAGERYDGAGRA
WRDAHRRAAQLTDLVRPGQHQSLSLSLSPSSGDDRVSSGGKTSTTTTTIT
TTTTTTGGQYYRGGSSTRQGFLKAGGLAAAGVIAAMGAVPGTIVEGRGRA
VEMAEAAVGVDEPAVLLQKEASPDLEGTSG*
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mRNA from alignment at Ecto-sp6_S_contig86:34369..36078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig86.17713.1 ID=mRNA_Ecto-sp6_S_contig86.17713.1|Name=mRNA_Ecto-sp6_S_contig86.17713.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1710bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:34369..36078- (Ectocarpus species6 EcLAC_371)
CAGGTTCTCGCGGCGGCCGCGGTGCTCGTACACCTACCGGCGTGCCTTGT
CCGGGGATACACGGCGATTCCGCCCCCATCATTGCCGAGAGGGGGGCTTT
CCGAGCGCGCCGCGGGGGCAGGGGAGCGGTACGATGGCGCAGGGCGGGCG
TGGCGAGACGCGCACAGAAGGTTAGCGCTTGGTTTGTCCGGGTTCTGCTT
CTTGTTCGTGGGGTGGTCGCTGTGTTTGGGGTTTCGAGAGTGCTGATATC
TTGTTGTTGTAGCCGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTT
GTCACGATATGCTCTGCGGTAGGATTTGGATTTTCTTTGGTCAGGATTTA
GTTCGCTGGGGATGCGGTTCGACAGCGGGTCTGACCGGCGCGAGATCCAT
GGATTATTTCATGTGGTGTTCGTCTTCGCTGTCCGACACGTTGGGCTCGG
TGCTGGGCTCAGAGCGTCCACGAACAGCAGTCGCTTGGTCTCCCTTCTCG
AGCTTTTGATGTTTTGCTTCTTTTTTAAAAGCCCGCTGTTTCAAGCTGGC
ATGTCGTGTACACCGCGTTCATTTAGTTTTGCTGCGGACCCCTCTTCTTT
GGGTGAGAGTTTAGCAAACCGGTTTGCTATTGAATGGGTTATTCGCGTGC
GTACATGCGTACGCAAGGGTCAACAAAAACTGCTGTAACCGTTGTCTGCC
TGGTCGCCTCCCTTGTTCAAACCATGGTTATCCGCCGGTGTGCAAAGGGC
CGCTCAGTTAACGGATCTCGTCCGGCCTGGGCAGCACCAGTCGCTGTCGC
TGTCGCTGTCGCCGTCGAGCGGGGACGACCGAGTGTCATCGGGAGGGAAG
ACGTCAACAACAACAACAACAATAACAACAACAACAACAACAACAGGTGA
TGCATGCTTCGGGTGCTGCTTGTAGTCGGTAGCTTGTAGTCGGCTTTTGT
GTCTGCAAGGCGTGTGCGATTAAGGGTTATGAACCCATCGCCTGCGGGCG
TTCGGGCGGGGTCAATTTTGTATCCTTCGGTGCCATCGCGATGTGGCCGC
GTATAAGAAAAATGGTTCCGTCTTTTGCCACCTCCAGTCGCCGGGAACCC
TTTGCTCGCGAAGAACGGATCGCCTCTTTCATCGTGGGCCGTCTGCCGCC
CCCCCGGGCAGACGCGTCATGGGACAAGCGCCCCACGACACAGAAAACAT
TGCTATTGCTTCCGAGGTCGGGCATGTCGGTTGCACCACCGAGGATATTC
TTCGCCTCGTTGATGTCGGACCACAGCTTAACGCGGCAGTAACCTTGTCG
TCGATCCGCAAAAGACACGAAAGGTGTGTTCTGGTGCACGTGGGAAGTAG
GGCGCCGGGGGTGGAGCGTGTACTGTACCCTAGGTACCTCGGCGGGATAT
TCAAAACCCCACAGGCTTCCCTCCGGTTGTGCTGTTGTTTTCAGCCTTTC
GAACTCGCGGGTTTTGCTTGTGGTATTGTTTGTCAGGTGGTCAGTATTAC
CGAGGCGGCAGCTCCACACGCCAGGGTTTCCTAAAGGCCGGCGGCCTCGC
TGCTGCCGGGGTGATCGCCGCCATGGGAGCTGTACCCGGGACGATCGTGG
AGGGCCGGGGGAGGGCTGTTGAAATGGCGGAAGCAGCAGTAGGAGTGGAC
GAACCGGCGGTATTGCTTCAGAAGGAGGCAAGTCCGGACTTGGAGGGTAC
CTCGGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:34369..36078-

>mRNA_Ecto-sp6_S_contig86.17713.1 ID=mRNA_Ecto-sp6_S_contig86.17713.1|Name=mRNA_Ecto-sp6_S_contig86.17713.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:34369..36078- (Ectocarpus species6 EcLAC_371)
CAGGTTCTCGCGGCGGCCGCGGTGCTCGTACACCTACCGGCGTGCCTTGT
CCGGGGATACACGGCGATTCCGCCCCCATCATTGCCGAGAGGGGGGCTTT
CCGAGCGCGCCGCGGGGGCAGGGGAGCGGTACGATGGCGCAGGGCGGGCG
TGGCGAGACGCGCACAGAAGGGCCGCTCAGTTAACGGATCTCGTCCGGCC
TGGGCAGCACCAGTCGCTGTCGCTGTCGCTGTCGCCGTCGAGCGGGGACG
ACCGAGTGTCATCGGGAGGGAAGACGTCAACAACAACAACAACAATAACA
ACAACAACAACAACAACAGGTGGTCAGTATTACCGAGGCGGCAGCTCCAC
ACGCCAGGGTTTCCTAAAGGCCGGCGGCCTCGCTGCTGCCGGGGTGATCG
CCGCCATGGGAGCTGTACCCGGGACGATCGTGGAGGGCCGGGGGAGGGCT
GTTGAAATGGCGGAAGCAGCAGTAGGAGTGGACGAACCGGCGGTATTGCT
TCAGAAGGAGGCAAGTCCGGACTTGGAGGGTACCTCGGGGTAG
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