mRNA_Ecto-sp6_S_contig86.17711.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig86.17711.1 vs. uniprot
Match: D7G1J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J1_ECTSI) HSP 1 Score: 856 bits (2211), Expect = 8.820e-310 Identity = 479/591 (81.05%), Postives = 481/591 (81.39%), Query Frame = 1
Query: 1 MAPPKLAMRNQAVQAVGEKYFQVALVGLATAGVLAIVAVSIGSTRGMFEFTIDRCDCLLTSGVEDAVAQGAECVPGQDYMGVDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYKKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGE--SEEIFCQGKPWNFEVPLYAGWTAIAHVAVMLLTSVWILSKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKM-GGSPKHTKDNTLRTGESAGVRPKIALGGDIEGQATGGHNLSSPGPVQSIPRATGAPGSKVDTKAAKXXXXXXXXXXXLPGKPGGXXXXXXXXXXEEEVSPAIRSSGPWDRDGEESGSYGDVETDSSVGSVARSPASVVSGKGHEKTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDDSPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 1764
MAPPKLAMRNQAVQAVGEKYFQVAL VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIY+KKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGE SEEIFCQ KPWNFEVPLYAGWTAIAHVAVM LTSVWIL+KSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKM GGSPKHTKDNTLRTGE AGVRPKIALGGDIEGQATGGHNLSSPGPVQSIPRATGAPGSK T XXXXXXXXXXXLPGKPGGXXX EEEVSPAIRSS GKGH KTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDDSPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV
Sbjct: 1 MAPPKLAMRNQAVQAVGEKYFQVAL--------------------------------------------------------VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEEIFCQAKPWNFEVPLYAGWTAIAHVAVMFLTSVWILTKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKMQGGSPKHTKDNTLRTGERAGVRPKIALGGDIEGQATGGHNLSSPGPVQSIPRATGAPGSKAATXXXXXXXXXXXXXXXLPGKPGGXXXRSASAS-EEEVSPAIRSS---------------------------------IGKGHGKTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDDSPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 501
BLAST of mRNA_Ecto-sp6_S_contig86.17711.1 vs. uniprot
Match: A0A6H5L9G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G0_9PHAE) HSP 1 Score: 458 bits (1178), Expect = 5.170e-155 Identity = 277/387 (71.58%), Postives = 281/387 (72.61%), Query Frame = 1
Query: 781 MLLTSVWILSKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKMGGSPKHTKDNTLRTGESAGVRPKIALGGDIEGQATGGHNLSSPGPVQSIPRATGAPGSKVDTKAAKXXXXXXXXXXXL----------PGKPGGXXXXXXXXXXEEEVSPAIRSSG-------------------------------------------------PWDRDGEESGSYGDVETDSSVGSVARSPASVVSGKGHEKTRSEIDWGRIMDAGDNDGTAKQYDDGDEDDDSPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 1764
M LTSVWILSKSGLVEGILDGSKLV GKAVT AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAE LVSPLRKMGGSPKHTK+NTLRTGESAGVRP IALG DIEGQA GGHNLSSPGPV+SIPRA AP SK T XXXXXXXXXXX PG GG EEEVSPAIRSSG PWDRD GDVETDSS+G+VARSPASVVSGKGHEKTRSEIDWGRIMDAG NDGTAK YDDGDEDDDSPHLSS MLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPK RGSATHFEV
Sbjct: 1 MFLTSVWILSKSGLVEGILDGSKLVDGKAVT--------AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEVLVSPLRKMGGSPKHTKNNTLRTGESAGVRPNIALGADIEGQAPGGHNLSSPGPVESIPRAAVAPASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXPGGEGGRSASAS----EEEVSPAIRSSGSSGRTLNRRAHAMGIKPQSSMTSHHIIRRRQITMVNRDHVSTSKYHNKGPWDRDA------GDVETDSSLGNVARSPASVVSGKGHEKTRSEIDWGRIMDAGHNDGTAKSYDDGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKARGSATHFEV 369
BLAST of mRNA_Ecto-sp6_S_contig86.17711.1 vs. uniprot
Match: A0A6H5KVI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI6_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 2.000e-6 Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = -2
Query: 369 MMMAMNADTTNSPTDASAAPVAPLPYTA 452
MMMAMN DTTNSPTDASAAP APLPYTA
Sbjct: 1 MMMAMNVDTTNSPTDASAAPEAPLPYTA 28 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig86.17711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig86.17711.1 >prot_Ecto-sp6_S_contig86.17711.1 ID=prot_Ecto-sp6_S_contig86.17711.1|Name=mRNA_Ecto-sp6_S_contig86.17711.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=589bp MAPPKLAMRNQAVQAVGEKYFQVALVGLATAGVLAIVAVSIGSTRGMFEFback to top mRNA from alignment at Ecto-sp6_S_contig86:12383..22402+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig86.17711.1 ID=mRNA_Ecto-sp6_S_contig86.17711.1|Name=mRNA_Ecto-sp6_S_contig86.17711.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10020bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:12383..22402+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig86:12383..22402+ >mRNA_Ecto-sp6_S_contig86.17711.1 ID=mRNA_Ecto-sp6_S_contig86.17711.1|Name=mRNA_Ecto-sp6_S_contig86.17711.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1767bp|location=Sequence derived from alignment at Ecto-sp6_S_contig86:12383..22402+ (Ectocarpus species6 EcLAC_371)back to top |