mRNA_Ecto-sp6_S_contig85.17688.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17688.1
Unique NamemRNA_Ecto-sp6_S_contig85.17688.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: D8LRU6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU6_ECTSI)

HSP 1 Score: 1098 bits (2840), Expect = 0.000e+0
Identity = 604/640 (94.38%), Postives = 610/640 (95.31%), Query Frame = 1
Query:  187 MAPPLPKGRSVPLKKTVLEEEEYVDRLGAIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDGDGLELRVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTSATATTKRRVIKQSEEVVKRVARATATSTKESADGDCNSSKSSGATAVTAVAATEGGCSSSPFSDEALTATPDQPHQGEPENNSSGPPNAGGSTQRTEMDEPLHCPPRVDSNEGVDDFGSSESRTDEPPAPRRPAPPVSSGAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYDEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGGGAMDVATFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGGSTPAKGKXXXXXXXXXAAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGGGAGANRG 2106
            MAPPLPKGRSVPLKKTVLEEEEYVDRLG IIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIG STDGDGLELRV+GG+S+GPSSS  AGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTSATATTKRRVIKQSEEVVKRVARATATSTKESADGDC+SSKSSGAT               P SDEALTATPDQPHQGEPE  SSGPPNAGGSTQRTEMDEPLHCPPRVDSNEGVDDFGSSESR DEPPAP RPAPPVS GAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGY+EVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAG GAMDVA+FMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGG TPAKGK XXXXXX  AAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGGGAGANRG
Sbjct:    1 MAPPLPKGRSVPLKKTVLEEEEYVDRLGEIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGGSTDGDGLELRVSGGNSDGPSSSNCAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTSATATTKRRVIKQSEEVVKRVARATATSTKESADGDCHSSKSSGATXXXXXXXXXXXXXXXPSSDEALTATPDQPHQGEPEYQSSGPPNAGGSTQRTEMDEPLHCPPRVDSNEGVDDFGSSESRADEPPAPPRPAPPVSRGAVVVKANPKVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGYEEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGRGAMDVASFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAAADGRGTHTPAPATPMTPQTPGTGRRXXXXXXXXXRGGRTPAKGKGXXXXXX--AAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGGGAGANRG 638          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: A0A225X327_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X327_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.880e-28
Identity = 94/232 (40.52%), Postives = 128/232 (55.17%), Query Frame = 1
Query:  226 KKTVLEEEEYVDRLGAIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDGDGLEL------RVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGS 900
            KK VLEEEEYVD L  IIE D+FP+  K+ R    L D  +D   + T    ++      G  S+     G G +       ++ G     P+  K   +   L +FVATHTSEDNE+F ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R   D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC++E  P   +QLL+++ S
Sbjct:    3 KKVVLEEEEYVDALDQIIERDFFPDLPKLKRQAELLRDE-EDLPWTNT----TLRAATTQGNMSVRSDASGSGWDQPTPMAEQLTGSPVVEPAEDKSQASM-TLNRFVATHTSEDNESFNELQEKAVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRLLADKACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVE--PGSKSQLLLENVS 217          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: A0A2P4YVG3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YVG3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.970e-28
Identity = 93/241 (38.59%), Postives = 129/241 (53.53%), Query Frame = 1
Query:  226 KKTVLEEEEYVDRLGAIIEGDYFPNNAKMYRALAGLADHGQD----------------TTPSRTPAGGSMVGTPVTGLRSIGESTDGDGLELRVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDG 897
            +K VLEEEEYV+ LG IIE D+FP+ +K+ +    L D  ++                 T  R+ A  S    P   L    E + G  L+   +  D    S +        L +FV THTSEDNEAF ELQEK  +   RRY WA+D   D +G+     KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P+L  + +IC++E  P   AQLL+++G
Sbjct:    3 RKVVLEEEEYVEALGQIIERDFFPDLSKLKKQSELLRDEEENLPWTDTTLRVASMTRGNTSERSNASDSGWDEPTPTL----EQSTGSPLQDEDHAEDKSRASMT--------LNRFVTTHTSEDNEAFNELQEKTVKDHERRYHWAFD---DKKGD----PKLHLLTNGTWISKEQRQIADKACAPKGPK--DDRPSAPQTWKYRARNPLLFPPDLETTREICQVESGPR--AQLLLENG 220          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: A0A0P1A564_PLAHL (Nuclear protein ES2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A564_PLAHL)

HSP 1 Score: 126 bits (317), Expect = 1.500e-27
Identity = 93/238 (39.08%), Postives = 131/238 (55.04%), Query Frame = 1
Query:  226 KKTVLEEEEYVDRLGAIIEGDYFPNNAKMY--RALAGLADHGQDTT---------PSRTPAGGSMVG----TPVTGLRSIGESTDGDGLELRVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKD 894
            KK VLEE+EYV+ LG IIE D+FP+  K+   R L  LAD G +T           +   +  S+VG    TP   L +      GD +++     DS    +S        L +FVATHTSEDNE+F ELQEK     +R+Y WA+D     E  +   +KL +L NG  +S ++R+ +D ACA +  + D RP   +TW++R RN L+F P L A+ DIC+I+ A ++   LL KD
Sbjct:    3 KKVVLEEDEYVETLGLIIERDFFPDLPKLQKQRRLL-LADEGTETALRAISTTSDDTSVRSNASVVGWDQPTPYAKLAA------GDRVQVED---DSNSVMASM------TLNRFVATHTSEDNESFKELQEKAVNDHQRKYHWAFD-----ENKDKGDSKLHLLANGTWISKDQRKLVDEACAPKG-LKDDRPGFPETWRYRARNPLIFQPELEATRDICQIKAA-SKGQLLLEKD 217          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: D0MY39_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MY39_PHYIT)

HSP 1 Score: 125 bits (315), Expect = 1.830e-27
Identity = 91/215 (42.33%), Postives = 122/215 (56.74%), Query Frame = 1
Query:  226 KKTVLEEEEYVDRLGAIIEGDYFPNNAKMYRALAGLADH-GQDTTPSRTPAGGSMVGTPVTGLRSIGESTDGDGLELRVN--GGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQ 858
            KK VLEE+EYV+ LG IIE D+FP+  K+ +    L D  G   T +   A  +  G  V  +RS    +  D     V     D +G  S+K +     L  FVATHTSEDNE+F ELQEK  +  +RRY WA+D   D +G+     KL +L NG  +S E+R+  DAACA + PK  D RP+  +TW +R RN L+F P L A+ DIC++ Q
Sbjct:    3 KKVVLEEDEYVEALGQIIERDFFPDLPKLKKQTELLRDEEGLPWTDTTLRAASTSRG--VVSVRSNANESGWDQPTPMVEQYALDEDGHDSTKASM---TLNHFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDDDKD-KGD----PKLHLLTNGTWISKEQRQIADAACAPKGPK--DDRPSAPETWTYRARNPLLFPPELDATRDICQVGQ 205          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: A0A329SZM5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZM5_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.840e-27
Identity = 98/246 (39.84%), Postives = 133/246 (54.07%), Query Frame = 1
Query:  226 KKTVLEEEEYVDRLGAIIEGDYFPNNAKMYRALAGLADHGQ-----DTT--PSRTPAGGSMVG-----------TPVTGLRSIGESTDGDGLELRVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 906
            KK VLEEEEYV+ LG IIE D+FP+  K+ +    L D  +     DTT   + T  G + V            TP+    +I ++ D         G D    +S         L +FVATHTSEDNE+F ELQEK  +  +RRY WA+D   D E  +    KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC+++  P   AQLL+++ S S
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDIPKLKKQTELLRDEEEGLPWTDTTLHAASTSRGNASVRSGASGSGWDQPTPIVEQPAIDQAQD--------EGADDNAKASM-------TLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFDN--DKEKGDP---KLHLLTNGTWISKEQRQIADDACAPKGPK--DDRPSAPETWKYRARNPLLFPPELEATRDICQVKADP--GAQLLLENSSKS 224          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: G4YIQ7_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIQ7_PHYSP)

HSP 1 Score: 124 bits (312), Expect = 5.560e-27
Identity = 89/242 (36.78%), Postives = 116/242 (47.93%), Query Frame = 1
Query:  226 KKTVLEEEEYVDRLGAIIEGDYFPNNAKMYR-----------------ALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDGDGLELRVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDG 897
            KK VLEEEEYVD LG IIE D+FP+  K+ R                  L      G  +  S     G    TP +G  ++  + + D  E                      L  FVATHTSEDNE+FAELQEK     +RRY WA+D     +       KL +L NG  +S E+R   D ACA + PK  D RP+  +TW+ R RN L+F P L A+ DIC++        QLL+++G
Sbjct:    3 KKVVLEEEEYVDALGQIIERDFFPDLPKLKRQTELLREEEGGVPWTDTTLRAANTRGNASVRSSASGTGWDQPTPQSGESAVDATQESDAAEADAKA--------------SMTLNHFVATHTSEDNESFAELQEKAVIDHQRRYHWAFD-----DDKKRGDPKLHLLTNGTWISKEQRRIADEACAPKGPK--DDRPSAPETWRFRARNPLLFPPELEATRDICQVRSGN----QLLLENG 219          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: A0A1V9ZPZ0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPZ0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.370e-27
Identity = 93/278 (33.45%), Postives = 131/278 (47.12%), Query Frame = 1
Query:  226 KKTVLEEEEYVDRLGAIIEGDYFPN--------------------------------------------NAKMYRALAGLADHGQDTTPSRT-----PAGGSMVGTPVTGLRSIGESTDG--DGLELRVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 906
            KK VLEE+EYV+ L +IIE D+FP+                                              +MY  L  + D     +  R+     P     + TP   +  I E  +   + +E+  N    EGP+ +K       L  FVATHTSEDN +F ELQEK     +++Y WA+D       N++  TKLL+LP+G  M+ ERR+ MD AC  +  I DSRP    TWK R +NQL F P++  S DIC +E+       L++++GSTS
Sbjct:    3 KKVVLEEDEYVNALDSIIERDFFPDLLYMKLQTMWLDALATKDQGLIAQTRQYISNEQKKQPQARKSSRTQRMYFFLDCIVDKSIVASKKRSREDEIPTSTWDLPTPPREMNDIEEPDENHEELMEIAAN----EGPNPAK-----MTLNHFVATHTSEDNASFEELQEKSVAEHKKKYHWAFD-------NDSDKTKLLLLPDGTKMTTERRQLMDKACDTKLAIEDSRPAAPDTWKFRAQNQLHFPPDMETSKDICNVEKQDV----LMLENGSTS 260          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: W2Q457_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q457_PHYPN)

HSP 1 Score: 124 bits (311), Expect = 9.640e-27
Identity = 92/233 (39.48%), Postives = 129/233 (55.36%), Query Frame = 1
Query:  226 KKTVLEEEEYVDRLGAIIEGDYFPNNAKMYRALAGLA--DHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDGDGLELRVNGGDSE--GPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAY-DTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGSTS 906
            KK VLEEEEYV+ LG IIE D+FP+  K+ +    L   + G   T +      +  G  V+   +I +S       +  +  D +  G  S   A     L +FVATHTSEDNE+F ELQEK  +  +RRY WA+ D    G+       KL +L NG  +S E+R+  D ACA + PK  D RP+  +TWK+R RN L+F P L A+ DIC+++  P +  QLL+++ S S
Sbjct:    3 KKVVLEEEEYVEALGQIIERDFFPDLPKLKKQTKLLRGEEEGLPWTDTTLRVASTSRGN-VSVWSNISDSGWDQPTPVVEHSADDQVQGEDSDDSAKTSMTLNRFVATHTSEDNESFNELQEKAVKDHQRRYHWAFVDDKEKGD------PKLHLLTNGTWISKEQRQIADEACASKGPK--DYRPSAPETWKYRARNPLLFPPELEATRDICQVKADPGD--QLLLENSSKS 224          
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Match: A0A662XZJ0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZJ0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.500e-26
Identity = 90/209 (43.06%), Postives = 119/209 (56.94%), Query Frame = 1
Query:  229 KTVLEEEEYVDRLGAIIEGDYFPNNAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDGDGLELRVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFRRRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADR-PKIGDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRI 852
            K VLEEEEYV+ LG IIE D+FP+   + R  A +       +P+R P   +  GT    +RS   + D           D +    S+G  N   L +FVATHTSEDNEAF ELQEK  E  +RRY WA+D   DG+G+     KL +L +G  +S ++R   D ACA + PK  D RP+  +TWK R RN L+F P+LA + DICR+
Sbjct:  444 KVVLEEEEYVEALGEIIERDFFPDLPSLKRQTA-VPSGWDQPSPAREP---TASGTNAL-VRSRTRNED-----------DEKSAVESEGVQNM-TLNRFVATHTSEDNEAFNELQEKAIEDHQRRYHWAFDDN-DGKGD----PKLHLLTDGTWISKQQRHLADEACAPKGPK--DDRPSAPETWKFRARNPLLFPPDLATARDICRL 628          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU6_ECTSI0.000e+094.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A225X327_9STRA2.880e-2840.52Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A2P4YVG3_9STRA4.970e-2838.59Uncharacterized protein n=2 Tax=Phytophthora palmi... [more]
A0A0P1A564_PLAHL1.500e-2739.08Nuclear protein ES2 n=1 Tax=Plasmopara halstedii T... [more]
D0MY39_PHYIT1.830e-2742.33Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A329SZM5_9STRA2.840e-2739.84Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
G4YIQ7_PHYSP5.560e-2736.78Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A1V9ZPZ0_9STRA9.370e-2733.45Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
W2Q457_PHYPN9.640e-2739.48Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A662XZJ0_9STRA1.500e-2643.06Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:519637..523118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1113.6
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LRU6
Model size2661
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Nuclear protein Es2
EggNOG OGs2E6IQ@1,2SD85@2759
Ec32 ortholog descriptionNuclear protein DGCR14
Ec32 orthologEc-08_002490.1
Cds size2208
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350483.019468-CDS-Ecto-sp6_S_contig85:519636..5202121682350483.019468-CDS-Ecto-sp6_S_contig85:519636..520212Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 519637..520212 +
1682350483.029148-CDS-Ecto-sp6_S_contig85:520579..5207741682350483.029148-CDS-Ecto-sp6_S_contig85:520579..520774Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 520580..520774 +
1682350483.0370715-CDS-Ecto-sp6_S_contig85:521228..5226651682350483.0370715-CDS-Ecto-sp6_S_contig85:521228..522665Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 521229..522665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350483.0450008-UTR-Ecto-sp6_S_contig85:522665..5231181682350483.0450008-UTR-Ecto-sp6_S_contig85:522665..523118Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 522666..523118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17688.1prot_Ecto-sp6_S_contig85.17688.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 519637..522665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17688.1

>prot_Ecto-sp6_S_contig85.17688.1 ID=prot_Ecto-sp6_S_contig85.17688.1|Name=mRNA_Ecto-sp6_S_contig85.17688.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=736bp
MTTNMPGDKARPKMITADGSKFEVATPTTLARLEDPRAWHARGEGGIQRP
RPRPGSGAIALPMAPPLPKGRSVPLKKTVLEEEEYVDRLGAIIEGDYFPN
NAKMYRALAGLADHGQDTTPSRTPAGGSMVGTPVTGLRSIGESTDGDGLE
LRVNGGDSEGPSSSKGAGNGGALTKFVATHTSEDNEAFAELQEKDQEAFR
RRYFWAYDTTPDGEGNNATSTKLLILPNGKMMSVERREQMDAACADRPKI
GDSRPNQVKTWKHRTRNQLMFSPNLAASNDICRIEQAPTEAAQLLVKDGS
TSATATTKRRVIKQSEEVVKRVARATATSTKESADGDCNSSKSSGATAVT
AVAATEGGCSSSPFSDEALTATPDQPHQGEPENNSSGPPNAGGSTQRTEM
DEPLHCPPRVDSNEGVDDFGSSESRTDEPPAPRRPAPPVSSGAVVVKANP
KVIQAHATRFPVPAPRKPSRGPWASPIEKPSSSRESVAELLAGTADSSGY
DEVPMTPSRVPGVDGDSPQITWGSIDGTPMILDPRATPLPEAGGGAMDVA
TFMETLGGVVGGVGQQQFEIKDLPARDKLAHRLEAVDTRRKRAKLGAGAA
ADGRGTHTPAPATPMTPQTPGTGRRTPGTGKRTPRGGSTPAKGKGKGKGK
GKAAAVTPAARSLAARLAQRQSVDTPFGGGLTPGRQRRRTDRSGGGAGAN
RGGLTPLPASPAPAKRKSGLPEGKTSLTDGLLTLK*
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mRNA from alignment at Ecto-sp6_S_contig85:519637..523118+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17688.1 ID=mRNA_Ecto-sp6_S_contig85.17688.1|Name=mRNA_Ecto-sp6_S_contig85.17688.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3482bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:519637..523118+ (Ectocarpus species6 EcLAC_371)
ATGACCACCAACATGCCCGGAGACAAGGCGCGGCCAAAGATGATCACTGC GGATGGGAGTAAATTCGAGGTGGCAACACCAACCACTCTTGCGCGGTTGG AGGATCCACGGGCATGGCACGCACGCGGGGAGGGGGGGATACAGCGCCCG AGACCTCGTCCCGGAAGTGGGGCAATCGCCCTCCCCATGGCCCCACCACT ACCAAAAGGGCGATCGGTTCCGCTGAAAAAGACGGTTCTCGAGGAGGAAG AGTACGTGGACCGCCTGGGGGCGATTATTGAAGGGGACTACTTCCCCAAC AACGCCAAGATGTATCGAGCCCTCGCTGGGCTTGCCGACCATGGCCAAGA CACCACACCTTCCCGCACACCGGCAGGTGGCTCCATGGTAGGCACCCCTG TGACTGGGCTACGGAGTATTGGCGAGTCTACTGATGGGGATGGCCTGGAG CTTCGAGTGAATGGGGGCGATTCGGAAGGACCATCGTCCTCGAAAGGCGC GGGAAACGGCGGCGCCCTCACCAAGTTCGTTGCGACACATACGTCGGAGG ACAACGAAGCCTTCGCCGAGCTACAGGTGAGGGGCGGCAAGATAATGATC TACTGTATCCTCTTCTCACAACAATGACCTACTGTAAGTAGCCGATGCAC AACAGTCATGTGTTGGTTTCAGTCTTGTGCTGGCACTGGGGTGCGTATCC TCACTGGCGTTCGTGGAGTTTCGATCCCTCTGCTTCTTCAGCTGCACCGA TCTACGTTTTGTGCTCCTTTGCCGTGAGACGGCGAGAGCTTGGAGAACAC GTGCTTCCCATCAATGCCGTCTGTTTACCTTACTCAATTGGACCGGATCT TTGCTAGATTTTGGGGTTCGCAACTGGCACGAGTTTAATGTGAAGACAGC AACAACAACAACAACAATCGCCTTGATCCGCATTCGATTTCAGGAGAAAG ACCAGGAGGCTTTTCGAAGGCGATATTTCTGGGCTTACGATACCACACCA GACGGGGAGGGCAACAACGCCACGTCTACCAAACTGTTGATACTCCCCAA CGGCAAGATGATGTCCGTTGAGCGGCGGGAGCAAATGGACGCAGCTTGTG CAGATCGTCCAAAAATAGGAGATTCACGACCAAATCAGGTGAGACGTCGC AGACTCACGTGCAGTGCAGAGCACATGAGCGTGGCGCGTAGTAGACGGAG GTACTATTGTACGGCCTCGTGCTTTTCCGAACCCCAAACATGCCAGGCTT TGTTTGGGAATCACCACGTCGGTTCACGTCCTTTAGCCAGTCCTGTCACT CAAGATACCTTCGCACTTAGTTGCGCACATGACAAACATTTCCCCCTTCA TGCAGTATTGCCACTCCCTTTTTTAAAGAAGATTGTCTGTGCGGGGTGTT CTCCCGTCAATGTTCTTGAACGGCACACCTCGTTGTTGGAGGATCATAGC AATCGCTGCATTCAGCCGACGATATCACGGCTGTTGCTGCAACATCGCCT CCGTACTCGGTACACGTGAAACGGATGTAACCCCCACGCGGTTATGAAGA AGTTGTGTTTCACCTGTTGTCGTATCTTGCTGTTTGCTGCAGGTGAAGAC TTGGAAGCACAGGACACGAAACCAGCTTATGTTTTCTCCGAACTTGGCAG CGTCGAACGACATATGCAGAATCGAGCAAGCACCTACGGAGGCTGCGCAG CTTCTTGTGAAGGACGGGTCAACATCGGCGACGGCAACAACGAAACGAAG AGTAATCAAGCAATCGGAAGAGGTCGTGAAGAGGGTGGCGCGGGCTACAG CAACATCTACCAAAGAATCTGCAGATGGCGACTGCAATTCTTCAAAGTCG TCCGGGGCTACCGCAGTAACAGCAGTCGCGGCAACTGAAGGAGGTTGTTC TTCCTCGCCCTTTAGCGATGAAGCTCTCACCGCGACTCCCGACCAACCGC ACCAGGGCGAACCTGAAAATAATTCTTCAGGGCCACCGAACGCAGGAGGA TCGACACAGCGGACCGAAATGGACGAACCTTTACATTGCCCGCCTCGCGT AGACTCGAACGAAGGCGTTGATGATTTTGGATCATCGGAATCACGGACCG ATGAGCCGCCCGCACCACGACGACCAGCACCACCAGTTTCGAGCGGTGCG GTAGTCGTCAAAGCGAACCCCAAGGTTATTCAGGCCCATGCAACGAGGTT CCCGGTCCCCGCGCCACGGAAACCAAGCCGAGGTCCTTGGGCATCCCCAA TCGAGAAGCCCTCGTCGTCGCGGGAATCCGTTGCGGAGCTATTGGCGGGA ACGGCGGACTCGTCGGGGTACGACGAAGTACCTATGACACCTTCGAGAGT ACCAGGCGTGGATGGAGACTCTCCGCAGATCACTTGGGGTTCCATCGACG GCACTCCCATGATCCTCGACCCGCGTGCCACTCCTCTCCCAGAGGCCGGC GGGGGGGCCATGGACGTGGCGACCTTCATGGAGACACTCGGAGGCGTCGT CGGCGGGGTTGGCCAACAGCAGTTCGAGATTAAAGATCTCCCTGCGCGAG ACAAGCTTGCGCACCGCCTCGAGGCCGTAGACACTCGCCGGAAGCGAGCG AAGCTTGGGGCCGGCGCGGCCGCAGACGGAAGGGGGACACACACGCCCGC GCCGGCAACACCGATGACCCCTCAGACGCCCGGCACAGGACGACGAACCC CCGGGACGGGGAAACGAACGCCCAGGGGTGGGAGCACACCCGCGAAGGGA AAGGGAAAGGGAAAGGGAAAGGGAAAGGCTGCCGCGGTGACGCCTGCCGC TCGAAGCCTGGCGGCGAGGCTAGCTCAGCGGCAGAGCGTCGACACACCGT TCGGCGGTGGGCTCACTCCTGGACGGCAAAGAAGGCGAACCGACCGCTCG GGGGGGGGGGCTGGTGCCAACCGAGGTGGGCTAACACCTCTGCCGGCTTC GCCTGCCCCGGCAAAGAGGAAGTCGGGCTTGCCTGAAGGCAAGACGTCGC TTACGGATGGCCTGTTGACCTTGAAGTGAATAAACGTGTTCGTTGTTACA ATGCGGTGATGTTGCCCTTGGTAGCGTGGTGTTGATGACATGTACCCTCG CTGGTGGGGGTGTACGCTGTCACTACCCAGAGGACGGCTAGCGCAGAAAA GGGTCCAGTTAAGAGGATTGCTAGCGTCTGTAAATTGAGGGTGATTGATG CGCGTTTGTCGTAGAAGATGAAGTACTTACCTCGAAAATCGTAGCGGTTT CGCTACAGGATGACAGTTATTTTGCTAAAATGAAGAGGGGTGTTGTTGCC GCTCTTTTCGTGGCACAGACAGTGAATCGGGGCTGGCATAAAAACGCTGG TTTATCCCGCGCAGTGAGTGGAGCATTGTGAAATCTCTTGGCGCTGCCCA GGGGGGACCAGGGGGGGGGTGTACTCATAGTCGTGCATGCCGTAGTCGTT TGACCATTGACCTCGCATCCCTACAAAGCCGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:519637..523118+

>mRNA_Ecto-sp6_S_contig85.17688.1 ID=mRNA_Ecto-sp6_S_contig85.17688.1|Name=mRNA_Ecto-sp6_S_contig85.17688.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2208bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:519637..523118+ (Ectocarpus species6 EcLAC_371)
ATGACCACCAACATGCCCGGAGACAAGGCGCGGCCAAAGATGATCACTGC
GGATGGGAGTAAATTCGAGGTGGCAACACCAACCACTCTTGCGCGGTTGG
AGGATCCACGGGCATGGCACGCACGCGGGGAGGGGGGGATACAGCGCCCG
AGACCTCGTCCCGGAAGTGGGGCAATCGCCCTCCCCATGGCCCCACCACT
ACCAAAAGGGCGATCGGTTCCGCTGAAAAAGACGGTTCTCGAGGAGGAAG
AGTACGTGGACCGCCTGGGGGCGATTATTGAAGGGGACTACTTCCCCAAC
AACGCCAAGATGTATCGAGCCCTCGCTGGGCTTGCCGACCATGGCCAAGA
CACCACACCTTCCCGCACACCGGCAGGTGGCTCCATGGTAGGCACCCCTG
TGACTGGGCTACGGAGTATTGGCGAGTCTACTGATGGGGATGGCCTGGAG
CTTCGAGTGAATGGGGGCGATTCGGAAGGACCATCGTCCTCGAAAGGCGC
GGGAAACGGCGGCGCCCTCACCAAGTTCGTTGCGACACATACGTCGGAGG
ACAACGAAGCCTTCGCCGAGCTACAGGAGAAAGACCAGGAGGCTTTTCGA
AGGCGATATTTCTGGGCTTACGATACCACACCAGACGGGGAGGGCAACAA
CGCCACGTCTACCAAACTGTTGATACTCCCCAACGGCAAGATGATGTCCG
TTGAGCGGCGGGAGCAAATGGACGCAGCTTGTGCAGATCGTCCAAAAATA
GGAGATTCACGACCAAATCAGGTGAAGACTTGGAAGCACAGGACACGAAA
CCAGCTTATGTTTTCTCCGAACTTGGCAGCGTCGAACGACATATGCAGAA
TCGAGCAAGCACCTACGGAGGCTGCGCAGCTTCTTGTGAAGGACGGGTCA
ACATCGGCGACGGCAACAACGAAACGAAGAGTAATCAAGCAATCGGAAGA
GGTCGTGAAGAGGGTGGCGCGGGCTACAGCAACATCTACCAAAGAATCTG
CAGATGGCGACTGCAATTCTTCAAAGTCGTCCGGGGCTACCGCAGTAACA
GCAGTCGCGGCAACTGAAGGAGGTTGTTCTTCCTCGCCCTTTAGCGATGA
AGCTCTCACCGCGACTCCCGACCAACCGCACCAGGGCGAACCTGAAAATA
ATTCTTCAGGGCCACCGAACGCAGGAGGATCGACACAGCGGACCGAAATG
GACGAACCTTTACATTGCCCGCCTCGCGTAGACTCGAACGAAGGCGTTGA
TGATTTTGGATCATCGGAATCACGGACCGATGAGCCGCCCGCACCACGAC
GACCAGCACCACCAGTTTCGAGCGGTGCGGTAGTCGTCAAAGCGAACCCC
AAGGTTATTCAGGCCCATGCAACGAGGTTCCCGGTCCCCGCGCCACGGAA
ACCAAGCCGAGGTCCTTGGGCATCCCCAATCGAGAAGCCCTCGTCGTCGC
GGGAATCCGTTGCGGAGCTATTGGCGGGAACGGCGGACTCGTCGGGGTAC
GACGAAGTACCTATGACACCTTCGAGAGTACCAGGCGTGGATGGAGACTC
TCCGCAGATCACTTGGGGTTCCATCGACGGCACTCCCATGATCCTCGACC
CGCGTGCCACTCCTCTCCCAGAGGCCGGCGGGGGGGCCATGGACGTGGCG
ACCTTCATGGAGACACTCGGAGGCGTCGTCGGCGGGGTTGGCCAACAGCA
GTTCGAGATTAAAGATCTCCCTGCGCGAGACAAGCTTGCGCACCGCCTCG
AGGCCGTAGACACTCGCCGGAAGCGAGCGAAGCTTGGGGCCGGCGCGGCC
GCAGACGGAAGGGGGACACACACGCCCGCGCCGGCAACACCGATGACCCC
TCAGACGCCCGGCACAGGACGACGAACCCCCGGGACGGGGAAACGAACGC
CCAGGGGTGGGAGCACACCCGCGAAGGGAAAGGGAAAGGGAAAGGGAAAG
GGAAAGGCTGCCGCGGTGACGCCTGCCGCTCGAAGCCTGGCGGCGAGGCT
AGCTCAGCGGCAGAGCGTCGACACACCGTTCGGCGGTGGGCTCACTCCTG
GACGGCAAAGAAGGCGAACCGACCGCTCGGGGGGGGGGGCTGGTGCCAAC
CGAGGTGGGCTAACACCTCTGCCGGCTTCGCCTGCCCCGGCAAAGAGGAA
GTCGGGCTTGCCTGAAGGCAAGACGTCGCTTACGGATGGCCTGTTGACCT
TGAAGTGA
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