mRNA_Ecto-sp6_S_contig85.17669.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17669.1
Unique NamemRNA_Ecto-sp6_S_contig85.17669.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: D8LRT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRT4_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.180e-40
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA
Sbjct:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 68
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: A0A835YV57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV57_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.340e-33
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            MSDVNELLI PLQ+F KDS+ L+KKCTKPDRKEFM VAKATTVGFLVMGFIGFFVKL+HIPINNI+M 
Sbjct:    1 MSDVNELLIIPLQQFFKDSVQLVKKCTKPDRKEFMIVAKATTVGFLVMGFIGFFVKLIHIPINNIIMG 68
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: W7U037_9STRA (Transport protein sec61 subunit gamma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U037_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.000e-31
Identity = 52/68 (76.47%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            MSDVN  +IQPL+KF+KDS HL+KKCTKPDRKEF ++A AT+VGFL+MGFIGFFVKL+HIPINNIL+ 
Sbjct:   24 MSDVNAHIIQPLKKFAKDSSHLVKKCTKPDRKEFARIAYATSVGFLIMGFIGFFVKLIHIPINNILLG 91
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: K3X8N9_GLOUD (Uncharacterized protein n=6 Tax=Oomycota TaxID=4762 RepID=K3X8N9_GLOUD)

HSP 1 Score: 110 bits (275), Expect = 2.020e-30
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            MSDVN L+ QPLQ+F K+S+HLIKKCTKPDRKEF ++A AT+VGFL+MGFIGFFVKLVHIPINNIL+ 
Sbjct:    1 MSDVNTLVFQPLQQFFKNSVHLIKKCTKPDRKEFTRIAAATSVGFLMMGFIGFFVKLVHIPINNILVG 68
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: B5YLP6_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLP6_THAPS)

HSP 1 Score: 108 bits (271), Expect = 8.240e-30
Identity = 50/64 (78.12%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:   13 NELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            NE+LIQPL++F+KDS+HL+KKCTKPDRKEF  +AKAT +GFL+MGFIGFFVKLVHIPINNIL+ 
Sbjct:    8 NEVLIQPLRQFAKDSIHLVKKCTKPDRKEFTAIAKATGIGFLIMGFIGFFVKLVHIPINNILVG 71
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: W4FU52_9STRA (Protein transporter Sec61 subunit gamma n=8 Tax=Oomycota TaxID=4762 RepID=W4FU52_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.170e-29
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            MSDVN L+I+PL++F+K+S+HL+KKCTKPDRKEF ++A AT VGFL+MGFIGFFVKLVHIPINNIL+ 
Sbjct:    1 MSDVNALVIEPLKQFAKNSVHLVKKCTKPDRKEFARIAGATGVGFLLMGFIGFFVKLVHIPINNILVG 68
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: A0A067CAZ0_SAPPC (Translocase SEC61 complex gamma subunit n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAZ0_SAPPC)

HSP 1 Score: 107 bits (268), Expect = 2.300e-29
Identity = 49/68 (72.06%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            MSDVN ++I+PL+ F+K+S+HL+KKCTKPDRKEF ++A AT++GFL+MGFIGFFVKLVHIPINNIL+ 
Sbjct:    1 MSDVNAIVIEPLKAFAKNSIHLVKKCTKPDRKEFTRIAGATSIGFLMMGFIGFFVKLVHIPINNILVG 68
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: B7FQV9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQV9_PHATC)

HSP 1 Score: 107 bits (267), Expect = 3.450e-29
Identity = 49/63 (77.78%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   16 ELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            E+LI+PLQ+F+KDSMHL+KKCTKPDRKEF  +A+AT VGFL+MGFIGFFVKL+HIPINNIL+ 
Sbjct:   10 EVLIEPLQQFAKDSMHLVKKCTKPDRKEFTAIARATGVGFLIMGFIGFFVKLIHIPINNILVG 72
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BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: M4BH76_HYAAE (Uncharacterized protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=M4BH76_HYAAE)

HSP 1 Score: 107 bits (266), Expect = 4.650e-29
Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            MSDVN L+ QPL++F K+S+HLIKKC KPDRKEF ++A AT+VGFL+MGFIGFFVKLVHIPINNIL+ 
Sbjct:    1 MSDVNTLVFQPLKEFFKNSLHLIKKCNKPDRKEFARIAGATSVGFLLMGFIGFFVKLVHIPINNILVG 68
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Match: A0A1Z5K738_FISSO (Protein transport protein SEC61 subunit gamma and related proteins n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K738_FISSO)

HSP 1 Score: 105 bits (263), Expect = 1.370e-28
Identity = 45/63 (71.43%), Postives = 61/63 (96.83%), Query Frame = 1 
Query:   16 ELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGFIGFFVKLVHIPINNILMA 204
            E+L++PL++F+KDS+HL++KCTKPDRKEF Q+A+AT++GFL+MGFIGFFVKL+HIPINNIL+ 
Sbjct:    9 EVLVEPLRQFAKDSLHLVQKCTKPDRKEFTQIARATSIGFLIMGFIGFFVKLIHIPINNILVG 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRT4_ECTSI3.180e-40100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YV57_9STRA3.340e-3385.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U037_9STRA9.000e-3176.47Transport protein sec61 subunit gamma n=2 Tax=Mono... [more]
K3X8N9_GLOUD2.020e-3077.94Uncharacterized protein n=6 Tax=Oomycota TaxID=476... [more]
B5YLP6_THAPS8.240e-3078.13Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
W4FU52_9STRA1.170e-2975.00Protein transporter Sec61 subunit gamma n=8 Tax=Oo... [more]
A0A067CAZ0_SAPPC2.300e-2972.06Translocase SEC61 complex gamma subunit n=2 Tax=Sa... [more]
B7FQV9_PHATC3.450e-2977.78Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
M4BH76_HYAAE4.650e-2975.00Uncharacterized protein n=16 Tax=Peronosporaceae T... [more]
A0A1Z5K738_FISSO1.370e-2871.43Protein transport protein SEC61 subunit gamma and ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:344755..347181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score133.7
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog2880.D8LRT4
Preferred nameSEC61G
Model size207
KEGG koko:K01262,ko:K07342
KEGG TC3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001555,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0006886,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0009994,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016049,GO:0019953,GO:0022412,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0030154,GO:0030728,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0044703,GO:0045184,GO:0046907,GO:0048468,GO:0048477,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:1904680
Exons2
EggNOG free text desc.P-P-bond-hydrolysis-driven protein transmembrane transporter activity
EggNOG OGsCOG2443@1,KOG3498@2759
Ec32 ortholog descriptionProtein translocase SecE domain
Ec32 orthologEc-08_002350.1
EC3.4.11.9
Cds size207
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350481.631236-CDS-Ecto-sp6_S_contig85:344754..3448641682350481.631236-CDS-Ecto-sp6_S_contig85:344754..344864Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 344755..344864 -
1682350481.645252-CDS-Ecto-sp6_S_contig85:347084..3471811682350481.645252-CDS-Ecto-sp6_S_contig85:347084..347181Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 347085..347181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17669.1prot_Ecto-sp6_S_contig85.17669.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 344755..347181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17669.1

>prot_Ecto-sp6_S_contig85.17669.1 ID=prot_Ecto-sp6_S_contig85.17669.1|Name=mRNA_Ecto-sp6_S_contig85.17669.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=69bp
MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGF
IGFFVKLVHIPINNILMA*
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mRNA from alignment at Ecto-sp6_S_contig85:344755..347181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17669.1 ID=mRNA_Ecto-sp6_S_contig85.17669.1|Name=mRNA_Ecto-sp6_S_contig85.17669.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2427bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:344755..347181- (Ectocarpus species6 EcLAC_371)
ATGTCAGACGTCAATGAACTTTTGATTCAACCCCTACAAAAGTTCTCCAA
GGACTCGATGCACCTCATCAAAAAGTGCACAAAACCCGACCGAAAAGGTT
AGTCGAACTTTCGTTCTGTTTCGTCGTCTGAGGTGTGGTACGGGAGCGTT
TGGACGTTTGTTGTGTTGCACCGAAGGCCTGTTTTATAGCCCGTCGACAC
CGCCCAGCATCGATTCCCCCGTCCAGTGCCACCAATGAAGTCCATGCGAG
TGACTGGGTAGGGGGGGGTTGGGTCGTTAGGCTCCGAAAAGAGAAAAGAG
ACACCCAGTGTGTGTGCCGTGTGCGGGCCTCGTCGCTCCTGTGTTGTGAA
CAAAGCACAGGTGACCAACCATCATCGGACGATCACTGAGACAGCAGTAG
ACTACCTCCATAGGGTCAGTGCCCCAATGATGGTGTTCGTGTCGTATTGA
CCGGCGTCCGGTACGTGAGACATTATTTTCTCCGCGTAATGTAACGGTGA
AGAGCAGATGCCATTATTTTATGTCAAGACAAATCGACGATTCGTATTGC
AGACTTCCGCTCCGCTGGCCACATCAGTAGGTGGCAAAAGATACCACTTC
TCGGTGTGATACCATCGTGAGATTTAGACTAAAGAGTCAATCACAGGGTG
CGGTGTGTGGTATTCTGTAGGGGGTGCAGTGTCGTGGCTATTATGTGTGA
TGATGTACACTCACAGGCCCCCCATCCGGCGGGTACAATACGTATCACGG
CGGTGTGATAACCTCAGCCACAGTTCACTCTAAGAACGGGGTGCGACTTG
CTTTTCGGTAAAGGCGGTGGTGCGGGTCTCAGCAGTATGTGTGGTGTGAT
GCATGGCTGGTGCGGGAGTCTCAGCAGGTACTGCTCTTGTCCAGAAAGGA
ATGGCGTGATTGAGCGTGTAGAGTGGAGGCACCATAGGAGTCTGTCTGAC
CCACGACCGTCTGAGCCGTATGCTCCTTTTAGTTGGGGTTGTACTCCATC
CACGGCGGTATTTATTGATCTTCATGGCTTGTGACCACGGAAGGCATCGG
CGTCAGTTGTACCAGTACGGACATTAGAATGTACTGAGCGGAGACCGGAA
CGGTTTTCAATGTGAAGACAACGACAACTACAACAACGGCTGTGGTTCGC
ACGGTTCGATACGGGGGGCGCCGTGGATAGTACACGGCTCAGCGTAGGGG
TGTGGTATGCTATGTGATCGTGTAGTACAGTAGTACTCCTATATTGGTTC
TTTTTTCGGGACTCATATAACAATTTGCTCAAGAGTATTTTTATGTTCGT
ATTCGAAGGGGGTGTGACATGTTGGTCACCTACGGTACATCGAGGCGGAG
ACGTTGAGTACCGCTTAGGTGGGAACCCAGATATTTCTTCATCCACACAA
AGATCGAAAAACATCGTCCCTGTTATCTGGGGGTGTAGTGTGGTACGGCA
GTGCCAGAGCTTGAGTTGGGGCATACCAAACCGCTGAATTTCTGCAAGCC
AAACTTGTGGTTCTACACTGACCAGAGGAACAACGTGGCATGACCACCTT
TGAGGCCAGTTTTGGTAGATTGCCCGATTTGGAATCCGGGTGTGTGGTGG
AATTTCGATAACTGTCCCTAAGAGAGCTGGGATACCTTGCGAAAAGCGTT
GGAAAACACATGTCACCTCACGTCGGCACTCGGTGCTCGGCGAACAGATT
GGCCCGAAAAGCTGCCGTAGTGCAGTCACGTATGGCATCAAGAAGTTCAT
GACCACAGATGCTCCGTGGATTCTGACGTGCCCCTCTGTAAAAGATACGA
CTTAGACGATTAGTGACTCTAGACTGCGATCAAAAACGCAACGGGGGAAA
AGTTGCAATAGCTACAACGCTGTCAGCCCAGAGCAGGGGAGGTCGGGAAA
CGTTCGGGCGACAGGATTGAACGTGGTGCTTTCGGGGGTTCATGTAGCAA
CGTTTCAACCCCTGCGCTGCTGGCCTGTGTTGCGTATTGGCTTGATTTGA
AAGGCAATTCTGAGGGAGAAAGCAGTGACTAACCAGTACCATGGATAGTA
GCGTGGCACCATAATAGGGCGGTGAGCATTCCTCTGTACAGTCACAGGCC
GTAGGCATATTGCGAGATCGCACAGCGCTCGGGCGAAGTGAATGATTCCT
GGAAAGGGTGCCGAAGCAGAAGCCTTCGAAAACATTGCGACTTCGCTCGA
GTACCACCGAAGCGCGCGTGATATGTAGATGGTGGCCGCCTTTCCTTTGC
ACATTCGAATAACTGTCACTCCACCTCGTAAACGACTCGTTTCCTTTGTA
TGACAATGTCCGCGCAGAGTTCATGCAAGTGGCCAAGGCCACCACGGTCG
GGTTCCTGGTCATGGGTTTCATTGGATTCTTCGTCAAGCTCGTCCACATC
CCAATCAACAACATCTTGATGGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:344755..347181-

>mRNA_Ecto-sp6_S_contig85.17669.1 ID=mRNA_Ecto-sp6_S_contig85.17669.1|Name=mRNA_Ecto-sp6_S_contig85.17669.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:344755..347181- (Ectocarpus species6 EcLAC_371)
ATGTCAGACGTCAATGAACTTTTGATTCAACCCCTACAAAAGTTCTCCAA
GGACTCGATGCACCTCATCAAAAAGTGCACAAAACCCGACCGAAAAGAGT
TCATGCAAGTGGCCAAGGCCACCACGGTCGGGTTCCTGGTCATGGGTTTC
ATTGGATTCTTCGTCAAGCTCGTCCACATCCCAATCAACAACATCTTGAT
GGCGTAA
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