mRNA_Ecto-sp6_S_contig83.17483.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17483.1
Unique NamemRNA_Ecto-sp6_S_contig83.17483.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17483.1 vs. uniprot
Match: D7G3W1_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W1_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.080e-37
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 1 
Query:    1 MPLIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQVRARLAPSRPVPSAASSTRPLGMPSEGT 219
            MPLIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQ   RLAPSRPVP AASSTRPLGMPSEGT
Sbjct:    1 MPLIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQRWRRLAPSRPVPPAASSTRPLGMPSEGT 73
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17483.1 vs. uniprot
Match: A0A6H5K6H4_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.170e-22
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 MPLIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQV 138
            MPLIWRSKGLSEHQVGILGAIRPVASFFV PVMCAFADRHSIHQQV
Sbjct:   27 MPLIWRSKGLSEHQVGILGAIRPVASFFVNPVMCAFADRHSIHQQV 72
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17483.1 vs. uniprot
Match: A0A6H5JEM5_9PHAE (MFS_1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.010e-8
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   34 EHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQV 138
            E  VG+LGAI PVASFF TPV CAFADRH+I QQV
Sbjct:    7 ESIVGLLGAINPVASFFWTPVACAFADRHNIQQQV 41
[Close]
BLAST of mRNA_Ecto-sp6_S_contig83.17483.1 vs. uniprot
Match: D7G4M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M5_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 7.460e-6
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 MPLIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQ 132
            +P+IWRSK LSE +VG+L A+RP+A     PV+C+   ++ + Q
Sbjct:   31 VPVIWRSKRLSETEVGLLAAVRPIALLLAGPVICSLIGKYGVQQ 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3W1_ECTSI3.080e-3794.52MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6H4_9PHAE7.170e-2297.83MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JEM5_9PHAE5.010e-877.14MFS_1_like domain-containing protein n=1 Tax=Ectoc... [more]
D7G4M5_ECTSI7.460e-645.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:18222..19656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score140.2
Seed ortholog evalue3.8e-31
Seed eggNOG ortholog2880.D7G3W1
Model size220
KEGG koko:K11367
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.MFS_1 like family
EggNOG OGsKOG3762@1,KOG3762@2759
EC3.6.4.12
Cds size219
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350461.3106287-CDS-Ecto-sp6_S_contig83:18221..182551682350461.3106287-CDS-Ecto-sp6_S_contig83:18221..18255Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 18222..18255 +
1682350461.3199315-CDS-Ecto-sp6_S_contig83:18742..188511682350461.3199315-CDS-Ecto-sp6_S_contig83:18742..18851Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 18743..18851 +
1682350461.3277388-CDS-Ecto-sp6_S_contig83:19580..196561682350461.3277388-CDS-Ecto-sp6_S_contig83:19580..19656Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 19581..19656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17483.1prot_Ecto-sp6_S_contig83.17483.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 18222..19656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17483.1

>prot_Ecto-sp6_S_contig83.17483.1 ID=prot_Ecto-sp6_S_contig83.17483.1|Name=mRNA_Ecto-sp6_S_contig83.17483.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=73bp
MPLIWRSKGLSEHQVGILGAIRPVASFFVTPVMCAFADRHSIHQQVRARL
APSRPVPSAASSTRPLGMPSEGT
back to top

mRNA from alignment at Ecto-sp6_S_contig83:18222..19656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17483.1 ID=mRNA_Ecto-sp6_S_contig83.17483.1|Name=mRNA_Ecto-sp6_S_contig83.17483.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1435bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:18222..19656+ (Ectocarpus species6 EcLAC_371)
ATGCCCCTCATCTGGCGATCCAAGGGGCTCTCCGGTGAGAGGATGCTGCT
GTGTACAAAATTTACTGCTTGCTTAATTTACCGACCATCAAATCTTATTA
TTTAGTTGGTTGCGACAGGGTGCCGTACACTGCTGTCGAGCATTTATAGG
TGCCGTATGTAGACTGGTCTCGAGCATCAGGACGTACGGAAACTGCACGC
AAGGAGCGGGGATACAGCTGCCATTCTCAAACGTACCTGGCAGACTCAAG
GGAAGAATAAATCGAAACCTGGTTGCCGAGAGCGGCGCTCATCGGCAAGT
TCCGAGGTTCAAGCCTCTGGTAAAGCTGCCGATCAGCTTACAAACTCAGT
GATATGCACACCTCTCGAAGTTCATACTGACGTCACCCCATGGGAAGGCT
AGTGTGAACTTCAACGAAACGTTGGAAGTAGAGTGACACCCTGAAATACC
TCTCCTTTTGCTCTACCTAATGTTGCTGTCGTTTTGCCTTGCTGCTGTTC
GCTGCCCGCCGAGAGAACCAGAGCACCAGGTCGGTATCTTGGGAGCGATT
CGACCCGTGGCCTCCTTCTTCGTAACCCCGGTCATGTGCGCGTTCGCGGA
CAGGCATAGCATTCACCAGCAGGTGCGTGCGTGCTGTGTCAAACCATGGC
AGCACTAGGCCTGCCATGTGCGTTTCAAGTGACGCACCCACACGCGTGCA
CTCGCCCGGGACGATCTGGAAGCAGTCTACGGATGGTGGGGGGGTAACCT
GAAGCGCTGCCGAGGGACTCGTTTGAGACCGAACAAGGCCAAGTCTCTTG
ATCATGTGCATGGCCAGAGGTCGCCCCGGCTCGTGTATACCATACCAAGT
ATCTTGCCAGCCAGCCCCGGGTCTGATGACGTTGCGCAGAAGGCGTGAAC
GTTTCAAACGGTTCATGTCCGGGTAGGCTCGCCCAGTGTGCGCGGAACGT
GCCTCTTGTATTTTGTTGGCGGTCTACAGTCTCTTGGCGTGGACTGCTGA
CATGTGTGGTTGTTGAGCCGCCGCCCCCATCGCCTACAAATGTACCGCTC
TACGTCGCACTGCTCGTGCATGTGTATCAGGATGGTATCTTGACGTATCT
TCGCTTGTTTGCATCCCTCCTGTTCCGTGGAGGGTCGAAAACTCGTGTTG
GCCGAGCGGTAGCCGCATCTCTGTGCGAGGCTATGTTGGGCTCTCCGAAA
AACACCCATGAACGAGCCAGCAACTGTCTGCCCTCCGACCCCTCCCCCCG
GCCCATCAATGCGAAAACCAAGGTGGTCTATACGGCGTTGTTTTTGTACA
CCGTCACTCGACCGTCGGTGCTTTTCGCGGGAACGTTCTTGGCGGTGGCG
GCGGTGGAGGCGTCTTGCTCCTTCTCGACCAGTCCCATCGGCAGCCTCAT
CGACTCGTCCATTAGGCATGCCTTCGGAGGGGACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:18222..19656+

>mRNA_Ecto-sp6_S_contig83.17483.1 ID=mRNA_Ecto-sp6_S_contig83.17483.1|Name=mRNA_Ecto-sp6_S_contig83.17483.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:18222..19656+ (Ectocarpus species6 EcLAC_371)
ATGCCCCTCATCTGGCGATCCAAGGGGCTCTCCGAGCACCAGGTCGGTAT
CTTGGGAGCGATTCGACCCGTGGCCTCCTTCTTCGTAACCCCGGTCATGT
GCGCGTTCGCGGACAGGCATAGCATTCACCAGCAGGTGCGTGCGCGTCTT
GCTCCTTCTCGACCAGTCCCATCGGCAGCCTCATCGACTCGTCCATTAGG
CATGCCTTCGGAGGGGACG
back to top