mRNA_Ecto-sp6_S_contig82.17467.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17467.1
Unique NamemRNA_Ecto-sp6_S_contig82.17467.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17467.1 vs. uniprot
Match: D8LDZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ9_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.890e-7
Identity = 26/40 (65.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 MKEVRHRNLTPTGCQGETGACS---GVALGVNYVLSVTKK 111
            M E RH NL PTGCQG   A     G ALGVNY+LSVTKK
Sbjct:    1 MNEARHPNLAPTGCQGVALARQRPEGAALGVNYLLSVTKK 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDZ9_ECTSI3.890e-765.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:659605..660137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_003150.1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350459.183505-CDS-Ecto-sp6_S_contig82:659604..6596671682350459.183505-CDS-Ecto-sp6_S_contig82:659604..659667Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 659605..659667 +
1682350459.1932611-CDS-Ecto-sp6_S_contig82:660043..6601241682350459.1932611-CDS-Ecto-sp6_S_contig82:660043..660124Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 660044..660124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350459.2036586-UTR-Ecto-sp6_S_contig82:660124..6601371682350459.2036586-UTR-Ecto-sp6_S_contig82:660124..660137Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 660125..660137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17467.1prot_Ecto-sp6_S_contig82.17467.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 659605..660124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17467.1

>prot_Ecto-sp6_S_contig82.17467.1 ID=prot_Ecto-sp6_S_contig82.17467.1|Name=mRNA_Ecto-sp6_S_contig82.17467.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=48bp
MKEVRHRNLTPTGCQGETGACSGVALGVNYVLSVTKKSSWATSSRKS*
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mRNA from alignment at Ecto-sp6_S_contig82:659605..660137+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17467.1 ID=mRNA_Ecto-sp6_S_contig82.17467.1|Name=mRNA_Ecto-sp6_S_contig82.17467.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=533bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:659605..660137+ (Ectocarpus species6 EcLAC_371)
ATGAAGGAAGTCCGGCATCGCAATCTCACTCCTACCGGCTGCCAGGGTGA
AACAGGTGCATGCGTAGACCAAACCGAAGCATTCTCATGGCATTTGTAGT
AGTAGCAGCAAGGCCTGACCATGCTTGTGAAATTCGGGAAGCCGAGGTGT
CTTTTCGTCTCTAATGTAGGGGCAGTCTATCTTGCATACAGGGTAGATCT
ACGCCGCAGCTGCGGCGTAGCAAACGCGACATAAATCAAACGGGATCCAG
TGTATAATTAGGCCGAAACACAACACCCACTCTCTCGTTCGCGGGGACAA
AATGTTTGTTGATGGTTCTCATGCATTGTCGACCGATCAACTTGTTGACG
TCAGCAACGTCATGCATTGTCGACCGATCAACTTGTTGACGTCAGCAACG
TTTCGCGTCCTACTACAATCTTGCGTGTGCATGCCGTAGTCAGGTGTGGC
GCTCGGCGTGAACTATGTCTTGTCCGTCACCAAGAAGAGTTCATGGGCCA
CCTCTTCTAGGAAAAGCTAAACACCAGCAGCGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:659605..660137+

>mRNA_Ecto-sp6_S_contig82.17467.1 ID=mRNA_Ecto-sp6_S_contig82.17467.1|Name=mRNA_Ecto-sp6_S_contig82.17467.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:659605..660137+ (Ectocarpus species6 EcLAC_371)
ATGAAGGAAGTCCGGCATCGCAATCTCACTCCTACCGGCTGCCAGGGTGA
AACAGGTGCATGCTCAGGTGTGGCGCTCGGCGTGAACTATGTCTTGTCCG
TCACCAAGAAGAGTTCATGGGCCACCTCTTCTAGGAAAAGCTAA
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