mRNA_Ecto-sp6_S_contig82.17452.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17452.1
Unique NamemRNA_Ecto-sp6_S_contig82.17452.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17452.1 vs. uniprot
Match: A0A6H5KZY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY4_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.810e-42
Identity = 209/289 (72.32%), Postives = 215/289 (74.39%), Query Frame = 1 
Query:   97 RAENTSDRLSLLAHKEQSGNDAARTGTAATADAGAARANGTQGAAXXXXXXXXX--SESAGPQHQAARLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVAQPTQQQPAPSAEQVALAEEAAPPSAEASPFAPHDSSDDAEVEQTNEEQQSEIKRRLVLVQAEISRLDKEEAESGRASPAATDSVVATSAAGVEHPPATLXXXXXXXXXXXXXXXXXXXXXSWEPPLFPSSGNGXXXXXXXXXXRHGQXXEKDEGRKEGL 957
            RAENTSDRLSLLAHKEQSGN+AA TG                   XXXXXXXX   SES GPQHQAARLS      XXXXXXX   X      XXXXXXXXXXXXXXXXXXXXXXXXXXXX     TVV QP QQQPAPSA+QVA AEEAAPP+AEASPFAPHDSSD AE+EQTNEEQQSEIKRRLVLVQAEISRLDKEEAESGRASPAA D VV       EHPPATL XXXXXXXXXXXXXXXXXXXX             XXXXXXXXXX HGQ  E+DEG+KEGL
Sbjct:  578 RAENTSDRLSLLAHKEQSGNEAAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXIGDSESGGPQHQAARLSPSAQLSXXXXXXXVSGXSWSIGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGKATVVMQPAQQQPAPSAQQVASAEEAAPPTAEASPFAPHDSSDAAEMEQTNEEQQSEIKRRLVLVQAEISRLDKEEAESGRASPAAADGVV-------EHPPATLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGQQEERDEGQKEGL 859
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BLAST of mRNA_Ecto-sp6_S_contig82.17452.1 vs. uniprot
Match: D7FYI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.440e-5
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 AAVAESERQLLSIIAQREAKAAYWEKASRDP 93
            AAVAESERQLLSIIAQREAKAAYWEKASRDP
Sbjct:  378 AAVAESERQLLSIIAQREAKAAYWEKASRDP 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZY4_9PHAE1.810e-4272.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYI9_ECTSI1.440e-5100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:554571..556619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1092
Hectar predicted targeting categoryother localisation
Exons3
Cds size1092
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350457.9618714-CDS-Ecto-sp6_S_contig82:554570..5546821682350457.9618714-CDS-Ecto-sp6_S_contig82:554570..554682Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 554571..554682 -
1682350457.9717133-CDS-Ecto-sp6_S_contig82:555109..5559951682350457.9717133-CDS-Ecto-sp6_S_contig82:555109..555995Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 555110..555995 -
1682350457.981144-CDS-Ecto-sp6_S_contig82:556525..5566191682350457.981144-CDS-Ecto-sp6_S_contig82:556525..556619Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 556526..556619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17452.1prot_Ecto-sp6_S_contig82.17452.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 554571..556619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17452.1

>prot_Ecto-sp6_S_contig82.17452.1 ID=prot_Ecto-sp6_S_contig82.17452.1|Name=mRNA_Ecto-sp6_S_contig82.17452.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=364bp
AAVAESERQLLSIIAQREAKAAYWEKASRDPPRAENTSDRLSLLAHKEQS
GNDAARTGTAATADAGAARANGTQGAAAAAAAATGASESAGPQHQAARLS
PSAQLSQAAQVATVSGLSWSIGAMQAARVVQARAAGQAASEARAAAAVQA
TPGGKATVVAQPTQQQPAPSAEQVALAEEAAPPSAEASPFAPHDSSDDAE
VEQTNEEQQSEIKRRLVLVQAEISRLDKEEAESGRASPAATDSVVATSAA
GVEHPPATLESSSSPAATAAATTTAAVMAPSWEPPLFPSSGNGVAGGVQQ
QQRRHGQQEEKDEGRKEGLDEGAPAGRKVRGRARSRVAVAAAGARRLAPC
GKLEALWTNHPSE*
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mRNA from alignment at Ecto-sp6_S_contig82:554571..556619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17452.1 ID=mRNA_Ecto-sp6_S_contig82.17452.1|Name=mRNA_Ecto-sp6_S_contig82.17452.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2049bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:554571..556619- (Ectocarpus species6 EcLAC_371)
GCGGCGGTTGCCGAGAGCGAGAGGCAGCTCCTGTCGATCATCGCGCAGCG
AGAGGCCAAGGCGGCCTACTGGGAAAAGGCAAGTCGTGACCCGCGTCCGT
TTTTGTTCTACTGCGGCGAGCATGGCGCTGGGCGCTGATGACGTCCGTAG
CTCTCAAGGATAAATGTTGATTTCCAGGTCTCTGACATGTTTGCGATTTC
AAGACTTTGCGTTCTGACCGACGCGTTCGTTTCAGCGAAGTGCATCTAGC
GTACGTAGAGTAGAGGCTGCTGCACCTGGCGAGGATTTTGCGCGATCGAT
CAGGAAAACATTTCTTCGGAGAATTGAAGGTTGTCACAAGAAGGTCGACA
CACAAATCAAAAGCAGGTCGTGCCTCCGTCTTGCGCCTGGCTACTGCTTG
TAGTGACACATTCCTGCGAGGCGATGCGAATCCCTTTTGGGAGGAGATGA
TCCCATGTTGCATATGCCTTGTTCGGGAGGAGGAATTCCCTATGTTGAAT
CATGTCGATACCATATTTCGTTTCTCTCAACGCTTGGTGAACTTTACGGT
AGGTTATCAGGCTTTGCCTCTACGCTGACGAACTTGCACATCCCCACCCC
CTCCTCCGCAGTTGGCGGCCCAAGCGAGGGCCGAGAACACATCGGACAGG
TTGAGCCTGCTCGCGCACAAAGAGCAGAGTGGGAACGACGCCGCAAGGAC
AGGCACGGCGGCTACGGCCGACGCGGGGGCCGCGCGGGCGAACGGGACAC
AGGGAGCAGCAGCAGCAGCAGCAGCAGCAACCGGAGCTTCTGAATCCGCG
GGGCCCCAGCACCAAGCGGCGCGGCTGTCACCGTCCGCGCAGCTGTCGCA
GGCAGCGCAGGTGGCAACCGTGTCGGGGCTCTCATGGTCCATCGGAGCGA
TGCAGGCGGCCAGGGTGGTGCAAGCGCGGGCGGCGGGGCAGGCGGCAAGC
GAGGCCAGGGCCGCTGCGGCGGTGCAGGCGACACCCGGAGGGAAAGCAAC
GGTAGTAGCGCAGCCAACGCAGCAGCAACCGGCACCATCAGCCGAGCAGG
TGGCATTGGCCGAAGAAGCCGCGCCGCCATCGGCCGAAGCGTCGCCTTTT
GCGCCGCACGACTCCTCGGATGACGCGGAAGTGGAGCAAACGAACGAGGA
GCAGCAGTCGGAGATCAAGAGGAGGCTTGTGCTGGTGCAGGCGGAGATTT
CGCGACTGGACAAGGAGGAAGCCGAATCGGGTCGGGCGTCACCCGCCGCT
ACCGATAGTGTTGTTGCCACTTCTGCTGCTGGTGTAGAACATCCTCCGGC
GACATTGGAATCATCATCGTCGCCAGCAGCAACGGCAGCAGCAACGACAA
CAGCCGCCGTGATGGCACCATCTTGGGAGCCGCCGCTGTTCCCCTCCTCC
GGCAATGGGGTGGCAGGCGGTGTGCAGCAGCAGCAGCGGCGGCACGGGCA
ACAAGAGGAGAAGGACGAGGGGCGGAAAGAAGGGCTCGACGAAGGGGCTC
CAGCCGGGCGGTCTGCAGCAGCAGCAGCAGCGGCGGCAGCGGCGTCAGCA
TCAGCACCGACACGGCTAGCGGCGCGACACAACGGGAGCATGAACCAATC
AGGCCTCGCCACGAACAACAATAGCAACAGCTTGGGCTTCGGGTTTTCGC
AGCTGTTTCGCGCAAGCGGGTAAGGGTTGCTCGCCTCCCGCCACGGCACC
CCCGGCGAACAGTGTGAGTCCTCTGTTCAACGGGGTCCAGACCGGGGCTT
TTAGCCAAGGGTAGCGACCGGCCTGAGTGGAGTATATTTTTGGCAGCATT
GGCACCAATTTGTAGTGGTTTTGGTCGCGTTGGTATCACGCTGCAAAGTG
GCTGGTACGTTGATAGCACTCTATGTCGCAGTTGTGTGCGCCGAGATCAC
CCGGCTTCATTTAGTGTGGGGAACGATGTGATGCCAGGAAAGTGAGAGGG
AGGGCGCGGTCGCGAGTGGCCGTCGCTGCTGCTGGGGCAAGACGCCTGGC
GCCGTGTGGAAAGTTGGAAGCATTGTGGACAAATCACCCGTCGGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:554571..556619-

>mRNA_Ecto-sp6_S_contig82.17452.1 ID=mRNA_Ecto-sp6_S_contig82.17452.1|Name=mRNA_Ecto-sp6_S_contig82.17452.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1092bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:554571..556619- (Ectocarpus species6 EcLAC_371)
GCGGCGGTTGCCGAGAGCGAGAGGCAGCTCCTGTCGATCATCGCGCAGCG
AGAGGCCAAGGCGGCCTACTGGGAAAAGGCAAGTCGTGACCCGCCGAGGG
CCGAGAACACATCGGACAGGTTGAGCCTGCTCGCGCACAAAGAGCAGAGT
GGGAACGACGCCGCAAGGACAGGCACGGCGGCTACGGCCGACGCGGGGGC
CGCGCGGGCGAACGGGACACAGGGAGCAGCAGCAGCAGCAGCAGCAGCAA
CCGGAGCTTCTGAATCCGCGGGGCCCCAGCACCAAGCGGCGCGGCTGTCA
CCGTCCGCGCAGCTGTCGCAGGCAGCGCAGGTGGCAACCGTGTCGGGGCT
CTCATGGTCCATCGGAGCGATGCAGGCGGCCAGGGTGGTGCAAGCGCGGG
CGGCGGGGCAGGCGGCAAGCGAGGCCAGGGCCGCTGCGGCGGTGCAGGCG
ACACCCGGAGGGAAAGCAACGGTAGTAGCGCAGCCAACGCAGCAGCAACC
GGCACCATCAGCCGAGCAGGTGGCATTGGCCGAAGAAGCCGCGCCGCCAT
CGGCCGAAGCGTCGCCTTTTGCGCCGCACGACTCCTCGGATGACGCGGAA
GTGGAGCAAACGAACGAGGAGCAGCAGTCGGAGATCAAGAGGAGGCTTGT
GCTGGTGCAGGCGGAGATTTCGCGACTGGACAAGGAGGAAGCCGAATCGG
GTCGGGCGTCACCCGCCGCTACCGATAGTGTTGTTGCCACTTCTGCTGCT
GGTGTAGAACATCCTCCGGCGACATTGGAATCATCATCGTCGCCAGCAGC
AACGGCAGCAGCAACGACAACAGCCGCCGTGATGGCACCATCTTGGGAGC
CGCCGCTGTTCCCCTCCTCCGGCAATGGGGTGGCAGGCGGTGTGCAGCAG
CAGCAGCGGCGGCACGGGCAACAAGAGGAGAAGGACGAGGGGCGGAAAGA
AGGGCTCGACGAAGGGGCTCCAGCCGGGCGGAAAGTGAGAGGGAGGGCGC
GGTCGCGAGTGGCCGTCGCTGCTGCTGGGGCAAGACGCCTGGCGCCGTGT
GGAAAGTTGGAAGCATTGTGGACAAATCACCCGTCGGAGTAG
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