mRNA_Ecto-sp6_S_contig82.17427.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17427.1
Unique NamemRNA_Ecto-sp6_S_contig82.17427.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17427.1 vs. uniprot
Match: D7G437_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G437_ECTSI)

HSP 1 Score: 557 bits (1436), Expect = 1.220e-200
Identity = 268/279 (96.06%), Postives = 273/279 (97.85%), Query Frame = 1 
Query:    1 MGCSGSRQQPASPTRRNRYDEFAALITDPLRGPTKADISFIETCTPRALEPKDKDATKLPLLVLAKDHDEWFRCLSKRCDPGVTWKQDGDGTSLGVELMGHRLYDDWCEAMARWDARHATTDSTGVRPLDSPQRNDWWSLGDYGGVSVALGLSVIATASLGCPLVYVGPVIWTVIKAWRESFKRCRPSHKLTKIFSTHETIVGSVLKELDTRIKAAEEVAKANPGHRPSIEKSARQRTRMDGLRMLLENDTRVGAATRCVVDHGVIDYYPPPPPEIRES 837
            MGCSGSRQQPASPTRRNRYDEF ALITDPL+GPTKADISFIETCTPRALEPKDKDATKLPLLVLAKDHDEWFRCLSKRC+PGVTWKQDG+ TSLGVELMGHRLYDDWCEAMARWDARHATT+STGVRPLDS QRNDWWS+GDYGGVSVALGLSVIATASLGCPLVYVGPVIWTVIKAWRESFKRCRPSHKLTKIFSTHETIVGSVLKELDTRIKAAEEVAKANPGHRPSIEKSARQR RMDGLRMLLENDTRVGAATRCVVDHGVID YPP PPEIRES
Sbjct:    1 MGCSGSRQQPASPTRRNRYDEFGALITDPLKGPTKADISFIETCTPRALEPKDKDATKLPLLVLAKDHDEWFRCLSKRCNPGVTWKQDGNTTSLGVELMGHRLYDDWCEAMARWDARHATTNSTGVRPLDSSQRNDWWSIGDYGGVSVALGLSVIATASLGCPLVYVGPVIWTVIKAWRESFKRCRPSHKLTKIFSTHETIVGSVLKELDTRIKAAEEVAKANPGHRPSIEKSARQRNRMDGLRMLLENDTRVGAATRCVVDHGVIDDYPPLPPEIRES 279
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BLAST of mRNA_Ecto-sp6_S_contig82.17427.1 vs. uniprot
Match: A0A6H5LA16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA16_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.780e-87
Identity = 139/214 (64.95%), Postives = 149/214 (69.63%), Query Frame = 1 
Query:  214 FRCLSKRCDPGVTWKQDGDGTSLGVELMGHRLYDDWCEAMARWDARHATT------DSTGVRPLDSPQRNDWWSLGDYGGVSVALGLSVIATASLGCPLVYVGPVIWTVIKAWRESFKRCRPSHKLTKIFSTHETIVGSVLKELDTRIKAAEEVAKANPGHRPSIEKSARQRTRMDGLRMLLENDTRVGAATRCVVDHGVIDYYPPPPPEIRES 837
             +CLSKRCDP VTWKQDG+ T LGVELMGHRL+DDWCEA   WDARHATT      DSTG+RPLD PQRN WWS G+YGGVSVALGLS IATASLGCPLVYVGPVIWT                                         AAEEVAKANPGHRPS E+S RQR R+DGLR+LL N+TRVGAATRCV+DHGVI  YPPP PEIRES
Sbjct:    1 MQCLSKRCDPWVTWKQDGEKTDLGVELMGHRLFDDWCEATKHWDARHATTARHAATDSTGLRPLDLPQRNGWWSRGEYGGVSVALGLSAIATASLGCPLVYVGPVIWT-----------------------------------------AAEEVAKANPGHRPSEEQSDRQRFRVDGLRVLLVNETRVGAATRCVMDHGVIADYPPPLPEIRES 173
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BLAST of mRNA_Ecto-sp6_S_contig82.17427.1 vs. uniprot
Match: A0A6H5L261_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L261_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.010e-34
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 MGCSGSRQQPASPTRRNRYDEFAALITDPLRGPTKADISFIETCTPRALEPKDKDATKLPLLVLAKDHDEWFR 219
            MGC  SRQ+PA PTRRNRY E AALITDP+RGPT  DI+FIETC+PRALEP DKDAT LPLLVLAKDHDEWFR
Sbjct:    1 MGCCDSRQRPAPPTRRNRYIEIAALITDPVRGPTTEDINFIETCSPRALEPTDKDATNLPLLVLAKDHDEWFR 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G437_ECTSI1.220e-20096.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA16_9PHAE1.780e-8764.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L261_9PHAE1.010e-3482.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:348333..350836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size840
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002930.1
Cds size840
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.9205937-CDS-Ecto-sp6_S_contig82:348332..3485301682350455.9205937-CDS-Ecto-sp6_S_contig82:348332..348530Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 348333..348530 -
1682350455.9294267-CDS-Ecto-sp6_S_contig82:348888..3490111682350455.9294267-CDS-Ecto-sp6_S_contig82:348888..349011Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 348889..349011 -
1682350455.9377513-CDS-Ecto-sp6_S_contig82:349531..3498321682350455.9377513-CDS-Ecto-sp6_S_contig82:349531..349832Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 349532..349832 -
1682350455.9466324-CDS-Ecto-sp6_S_contig82:350618..3508361682350455.9466324-CDS-Ecto-sp6_S_contig82:350618..350836Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 350619..350836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17427.1prot_Ecto-sp6_S_contig82.17427.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 348333..350836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17427.1

>prot_Ecto-sp6_S_contig82.17427.1 ID=prot_Ecto-sp6_S_contig82.17427.1|Name=mRNA_Ecto-sp6_S_contig82.17427.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=280bp
MGCSGSRQQPASPTRRNRYDEFAALITDPLRGPTKADISFIETCTPRALE
PKDKDATKLPLLVLAKDHDEWFRCLSKRCDPGVTWKQDGDGTSLGVELMG
HRLYDDWCEAMARWDARHATTDSTGVRPLDSPQRNDWWSLGDYGGVSVAL
GLSVIATASLGCPLVYVGPVIWTVIKAWRESFKRCRPSHKLTKIFSTHET
IVGSVLKELDTRIKAAEEVAKANPGHRPSIEKSARQRTRMDGLRMLLEND
TRVGAATRCVVDHGVIDYYPPPPPEIRES*
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mRNA from alignment at Ecto-sp6_S_contig82:348333..350836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17427.1 ID=mRNA_Ecto-sp6_S_contig82.17427.1|Name=mRNA_Ecto-sp6_S_contig82.17427.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2504bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:348333..350836- (Ectocarpus species6 EcLAC_371)
ATGGGTTGCTCTGGCAGCCGCCAGCAGCCCGCATCCCCCACCCGAAGGAA
TAGATATGACGAGTTCGCGGCTCTTATTACCGATCCGCTGAGGGGTCCTA
CCAAGGCCGACATCAGTTTCATTGAAACCTGCACGCCGAGGGCGCTCGAG
CCCAAAGACAAGGATGCGACCAAATTGCCGCTCTTGGTGCTGGCAAAAGA
CCACGACGAATGGTTCAGGTGCGCGTTCTTCCTTGTTGTGCACTCACTGT
ACACACGTCCAAGTGGTCTTTGCGTGTGAGAGAGATAAAACAACATAGCG
AGAGGGACCGAGAGAGGGAGAGATAAAGAGGAAGAGAGAGACAGACAGAC
AGAGACAGAGAGAAGGGGAGAGAGAGGCAGGCAGGCAGGCAGTAGAGACA
GAGACAAGGACACAAACGGAGACAGAGACAGAGCGAGAGAACACTTTCTT
GAGTCATACATGCACTCTCGGAGTGAGTGAAGGTGAAACCGTTCTTGGTT
CTTGGACAGTTTAGGTGGGGTGCCGGACGGGAGCCCTGAAATTTTCTGGT
CGGTACTTGTACATGACAAGGGCACGCACAAAAGAAAATCCCAGGAAACA
TGTAGACCTAATATTGGGCCCTGGCGGGCTGTCTGTCTATTAAAAGCAAC
ATACATGTAGAATGCTTGTAGTAAACCTGAATAATCTACATACGAAGTTT
GTGTTTTATTGCATACCGGTACTTCGTACATATTATATGCAGTAAACGCA
AATACTAGTAAGCCGCAGTCGATACCTCCGAATTGCATAGACCAGGGTTC
ACTGTAGAGCGTACATACTTGAACATTTTCATGGATGGATGTACCCATCC
TCCCTGAAAAGGAAGGTACGTCTCTTGACGTCGAACGCCGCCACGGACCC
CGGGGATGATGATTTTATCTTTGCCTTGTTTGTGTCGGTGAAGAAAGTTG
CCGTACAAGAGGCTCTCAAGCAACATACGATTCGCGCACGTCTATTCACG
ACAGGTGCTTGAGCAAACGGTGCGACCCAGGGGTGACGTGGAAACAGGAC
GGAGACGGAACGTCGCTAGGGGTTGAGCTCATGGGCCACAGATTGTACGA
CGATTGGTGCGAGGCAATGGCGCGTTGGGATGCGAGACACGCCACGACCG
ACAGCACCGGCGTGCGACCACTGGACTCGCCGCAGAGAAACGACTGGTGG
TCGCTCGGCGACTACGGCGGCGTGTCTGTCGCCCTTGGGTTATCTGTTAT
CGCTACAGCCTCACTCGGGTGTCCACTTGTCTATGTTGGCCCTGTTATTT
GGACGGTGAGATTTGTACGAAGGGGTTCTTAAAAGACTCAGGACTGTGTC
GCAGCTGCTGTTTTTCTGTGCCCACACATCCATACAAATGCATAGGAAGA
CCTACATGTCGATTTTCGATCCTGAGATATTTAGATACGTTTTTTCTTTG
ATGCCGTTTCGAACTCCCAAGCGAAGAGTATTGAAAGGGTTACGATGCGG
ATCGTGTTGGAATGAAAAATATCAGACAATGCAGGGCAGTGCTGGAGGCG
CCGAGAGTAATGTGTTAGTGTGCAGTTTGCCAAAGGTACTTTCCGCACTC
GACCAGCTGCTCACCCGGTACTTCATCTTCCTCCAGCAGTGTGATACGTG
CTCCATGGTTGCCTCTGCCGAGTCCGCATGATTTCAGCTTCATACCAACG
GCCTGGTCACGTCGGCCAATAAATGGGCGCATAACTGACAGAGGTCGTTT
TTCGTGCCTATCGCACGAAACGAATCTCATGCTCAACTACTGCTGTACAC
CATTCCACATCATGTTGGTCGACAGGTCATCAAAGCGTGGCGGGAAAGTT
TCAAGCGGTGTCGACCATCACATAAGCTGACGAAGATCTTTTCCACCCAT
GAGACTATCGTTGGGTCCGTTCTCAAGGAGCTCGACACACGCATCAAGGT
TTGATGCTTGCCAAGGAGAAAATAATGCGACATCCAGCACTCAGGAGCGA
ACGGCAGCAGCCTGAGCGGAGTCCTGCAAAAGAAAGTCTACTGTAGTTTA
AAATGGCTTGTGAGGGCACGACGTAGGTCACCGGGGCGACTAATGTTCTT
GGCAGTCAGGGTTTTGGGATGGCATTCACACAATGCACGGGCATGTCGCA
GTGGACCGCGTCTCGTGTATGCCAACCGGAAAGGGCTTCTTGTCTTACAA
CTTCTGAAAAGAAATATCCTCAGTATGGTGAGCATCATCCCTTCACAGAT
AGTGGGTACTCTTGCGCTCATGCATACGTTTGTTGTGCGTTGATTTGTGT
GTCCAGGCCGCAGAAGAGGTGGCCAAGGCCAACCCGGGGCACCGCCCTTC
GATAGAAAAGAGCGCCCGACAGAGAACCCGCATGGATGGTCTGAGGATGC
TCTTGGAAAACGACACTCGGGTAGGTGCTGCTACACGGTGTGTCGTGGAC
CACGGTGTCATCGATTACTACCCCCCACCCCCACCCGAAATACGGGAGAG
CTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:348333..350836-

>mRNA_Ecto-sp6_S_contig82.17427.1 ID=mRNA_Ecto-sp6_S_contig82.17427.1|Name=mRNA_Ecto-sp6_S_contig82.17427.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:348333..350836- (Ectocarpus species6 EcLAC_371)
ATGGGTTGCTCTGGCAGCCGCCAGCAGCCCGCATCCCCCACCCGAAGGAA
TAGATATGACGAGTTCGCGGCTCTTATTACCGATCCGCTGAGGGGTCCTA
CCAAGGCCGACATCAGTTTCATTGAAACCTGCACGCCGAGGGCGCTCGAG
CCCAAAGACAAGGATGCGACCAAATTGCCGCTCTTGGTGCTGGCAAAAGA
CCACGACGAATGGTTCAGGTGCTTGAGCAAACGGTGCGACCCAGGGGTGA
CGTGGAAACAGGACGGAGACGGAACGTCGCTAGGGGTTGAGCTCATGGGC
CACAGATTGTACGACGATTGGTGCGAGGCAATGGCGCGTTGGGATGCGAG
ACACGCCACGACCGACAGCACCGGCGTGCGACCACTGGACTCGCCGCAGA
GAAACGACTGGTGGTCGCTCGGCGACTACGGCGGCGTGTCTGTCGCCCTT
GGGTTATCTGTTATCGCTACAGCCTCACTCGGGTGTCCACTTGTCTATGT
TGGCCCTGTTATTTGGACGGTCATCAAAGCGTGGCGGGAAAGTTTCAAGC
GGTGTCGACCATCACATAAGCTGACGAAGATCTTTTCCACCCATGAGACT
ATCGTTGGGTCCGTTCTCAAGGAGCTCGACACACGCATCAAGGCCGCAGA
AGAGGTGGCCAAGGCCAACCCGGGGCACCGCCCTTCGATAGAAAAGAGCG
CCCGACAGAGAACCCGCATGGATGGTCTGAGGATGCTCTTGGAAAACGAC
ACTCGGGTAGGTGCTGCTACACGGTGTGTCGTGGACCACGGTGTCATCGA
TTACTACCCCCCACCCCCACCCGAAATACGGGAGAGCTGA
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