mRNA_Ecto-sp6_S_contig82.17418.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17418.1
Unique NamemRNA_Ecto-sp6_S_contig82.17418.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17418.1 vs. uniprot
Match: D7FZH7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH7_ECTSI)

HSP 1 Score: 975 bits (2521), Expect = 0.000e+0
Identity = 500/515 (97.09%), Postives = 505/515 (98.06%), Query Frame = 1 
Query:    1 MKNHAFGTALVSLLAATATKGDAARRSSRPAFTFTAPAATPRCLSNSISSNRLGCRPCSKSQPATRPGGWPRVGTRRRVANVAVLGLADDGAAGPGLGETSLPDGTSRGRRQRHRPRPSGGGKRGGRFNRAAGVDGAGQAVRCAKLGAASVPSDFGGTEEAEDRCIRRLDLAVRRVFADYYSCTDVRETTESLGVFLKEATAALEVDCSTSRSGSVFPAHLASRLKARLLQTADRLNYHLDGDKPMVLYRLWNRGRPIDVYERDLLHCPRWIELVAETKRQMDNPPVVVEGGMGTICYPSGDIFEGHVDSLIRTAKAGEVHVAAASYPPQNARPFVDAELSSSADATASSRGLEGSSSGGDGGGAVTQDVRTVSGLVSLTIACLEEGMSDEATILQRHLQSPDFGHPLLRLASPSGNEPDHPHLPDDPEMNPELLRAEEELTEEHLALGERGAKELMHDRRRAQLDVYLICAAYRRNLPEVDDAASRGGWHLNEEDGRILDEMIREAAAMDSPWS 1545
            MKNHAFGTALVSLLAA  TKGDAARRSSR AFTFTAPA TPRCLSNSISSNRLGCRPCSKSQPATRPGGWPRVGTRRRVANVAVLGLADDGA GPGLGETSLPDGTSRGRRQRHRPRPSGGGKRGG FNRAAGV GAGQAVRCAKLGAASVPSDFGGTEEAEDRCIRRLDLAVRRVFADYYSCTDVRETTESLGVFLKEATAALE+DCSTSRSGSVFPAHLASRLKARLLQTADRLNYHLDGDKPMVLYRLWNRGRPIDVY+RDLL+CPRWIELVAETKRQMDNPPVVVEG +GTICYPSGDIFEGHVDSLIRTAKAGEV +AAASYPPQNARPFVDAELSSSADATASSRGLEGSSSGGDGGGAVTQDVRTVSGLVSLTIACLEEGMSDEATILQRHLQSPDFGHPLLRLASPSGNEPDHPHLPDDPEMNPELLRAEEELTEEHLALGERGAKELMHDRRRAQLDVYLICAAYRRNLPEVDDAASRGGWHLNEEDGRILDEMIREAAAMDS WS
Sbjct:    1 MKNHAFGTALVSLLAAAVTKGDAARRSSRLAFTFTAPAPTPRCLSNSISSNRLGCRPCSKSQPATRPGGWPRVGTRRRVANVAVLGLADDGATGPGLGETSLPDGTSRGRRQRHRPRPSGGGKRGGWFNRAAGVGGAGQAVRCAKLGAASVPSDFGGTEEAEDRCIRRLDLAVRRVFADYYSCTDVRETTESLGVFLKEATAALELDCSTSRSGSVFPAHLASRLKARLLQTADRLNYHLDGDKPMVLYRLWNRGRPIDVYDRDLLNCPRWIELVAETKRQMDNPPVVVEGEIGTICYPSGDIFEGHVDSLIRTAKAGEVPLAAASYPPQNARPFVDAELSSSADATASSRGLEGSSSGGDGGGAVTQDVRTVSGLVSLTIACLEEGMSDEATILQRHLQSPDFGHPLLRLASPSGNEPDHPHLPDDPEMNPELLRAEEELTEEHLALGERGAKELMHDRRRAQLDVYLICAAYRRNLPEVDDAASRGGWHLNEEDGRILDEMIREAAAMDSRWS 515
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZH7_ECTSI0.000e+097.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:244103..247915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2029
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002810.1
Cds size1548
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17418.1prot_Ecto-sp6_S_contig82.17418.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 244584..247915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.0826612-UTR-Ecto-sp6_S_contig82:244102..2445831682350455.0826612-UTR-Ecto-sp6_S_contig82:244102..244583Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 244103..244583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.091195-CDS-Ecto-sp6_S_contig82:244583..2448441682350455.091195-CDS-Ecto-sp6_S_contig82:244583..244844Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 244584..244844 -
1682350455.0990047-CDS-Ecto-sp6_S_contig82:245357..2457231682350455.0990047-CDS-Ecto-sp6_S_contig82:245357..245723Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 245358..245723 -
1682350455.1069906-CDS-Ecto-sp6_S_contig82:246017..2460951682350455.1069906-CDS-Ecto-sp6_S_contig82:246017..246095Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 246018..246095 -
1682350455.115008-CDS-Ecto-sp6_S_contig82:246235..2463171682350455.115008-CDS-Ecto-sp6_S_contig82:246235..246317Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 246236..246317 -
1682350455.123021-CDS-Ecto-sp6_S_contig82:246741..2469861682350455.123021-CDS-Ecto-sp6_S_contig82:246741..246986Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 246742..246986 -
1682350455.1309025-CDS-Ecto-sp6_S_contig82:247399..2479151682350455.1309025-CDS-Ecto-sp6_S_contig82:247399..247915Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 247400..247915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17418.1

>prot_Ecto-sp6_S_contig82.17418.1 ID=prot_Ecto-sp6_S_contig82.17418.1|Name=mRNA_Ecto-sp6_S_contig82.17418.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=516bp
MKNHAFGTALVSLLAATATKGDAARRSSRPAFTFTAPAATPRCLSNSISS
NRLGCRPCSKSQPATRPGGWPRVGTRRRVANVAVLGLADDGAAGPGLGET
SLPDGTSRGRRQRHRPRPSGGGKRGGRFNRAAGVDGAGQAVRCAKLGAAS
VPSDFGGTEEAEDRCIRRLDLAVRRVFADYYSCTDVRETTESLGVFLKEA
TAALEVDCSTSRSGSVFPAHLASRLKARLLQTADRLNYHLDGDKPMVLYR
LWNRGRPIDVYERDLLHCPRWIELVAETKRQMDNPPVVVEGGMGTICYPS
GDIFEGHVDSLIRTAKAGEVHVAAASYPPQNARPFVDAELSSSADATASS
RGLEGSSSGGDGGGAVTQDVRTVSGLVSLTIACLEEGMSDEATILQRHLQ
SPDFGHPLLRLASPSGNEPDHPHLPDDPEMNPELLRAEEELTEEHLALGE
RGAKELMHDRRRAQLDVYLICAAYRRNLPEVDDAASRGGWHLNEEDGRIL
DEMIREAAAMDSPWS*
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mRNA from alignment at Ecto-sp6_S_contig82:244103..247915-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17418.1 ID=mRNA_Ecto-sp6_S_contig82.17418.1|Name=mRNA_Ecto-sp6_S_contig82.17418.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3813bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:244103..247915- (Ectocarpus species6 EcLAC_371)
ATGAAAAATCATGCCTTCGGGACCGCCTTGGTCTCACTATTGGCAGCTAC
GGCAACCAAGGGCGACGCGGCTAGACGCTCCTCGCGCCCTGCTTTCACCT
TCACGGCACCGGCGGCCACGCCGCGTTGCCTGAGCAACAGCATTAGCAGC
AACCGCCTCGGGTGCAGACCTTGCTCGAAATCGCAACCAGCGACGAGACC
TGGAGGATGGCCCCGTGTGGGTACCCGCAGACGAGTAGCAAATGTTGCTG
TCCTAGGCTTGGCTGATGATGGAGCGGCGGGGCCAGGCTTAGGTGAGACT
TCGCTACCAGACGGCACAAGCCGGGGGCGGCGGCAGAGGCACAGACCGCG
ACCGAGCGGGGGCGGGAAGCGAGGAGGTCGGTTCAATAGGGCGGCCGGTG
TAGACGGGGCAGGACAAGCGGTTCGATGTGCAAAGCTTGGTGCCGCTTCG
GTACCGTCGGATTTCGGCGGGACGGAAGAGGCGGAGGATAGATGCATCAG
GCGACTCGATTTGGCGGTGAGGGAAATCGTGGGAGAGATGAGTTTGGTGA
AGGGAATACAGGAATTGACGTTGTGTGAGCACGCTTGGGGGGCGTACCTA
GTACCAAGGGCTAAAGCGATGCACGGGCGAGCAAAGGACGTTTGGAAACG
TAACTTATTTTGGAATCTGTATCAAGTTCGAGTGATGTTTCGGTAAGCGA
TCGTGAGCGAAAGGCACTGGCTGTAAGCGCGAGCATTTGAAATAAAAATC
ACGTACACATAGGAATACGATAATACCAGGTGTATATCTGGTGTTACTGC
TGCTTGCTGTTGTTGTTGTTGGCGCTATCGCTGTCCCCGCTTGTTATGTG
AAACCTCGATCTTTGCTACCTCCGTGCTTTTCATAAGTTTTTCTGTTAAC
AGCTCTGTGCCCACGCATAAAACTCGCAGGTCCGAAGAGTGTTTGCCGAT
TACTATTCCTGCACTGACGTGCGGGAGACGACAGAATCACTGGGCGTGTT
TCTGAAGGAGGCTACTGCTGCTCTGGAGGTAGACTGTTCCACCTCCCGCT
CCGGAAGCGTATTCCCCGCCCACCTCGCCTCCCGACTGAAGGCCCGGCTG
CTGCAGACCGCGGATCGGCTGAACTACCACCTGGACGGGGACAAGCCGAT
GGTCCTCTACCGTCTTTGGAACAGGTTTGTCCTACATAGCGGTTGACTCG
GGCGACGTGGGAGAGCGCGGCGACTGAGGAATAAAACCTCGAAAAACAGA
GCCAGGGTCACACGTTGCTTTCTGTTTTTTTGTTTGGTGCGACACCGGGC
CTCTTCTTGTGTCCTGGTACCAGGGTGCGTGGCTCATGCTTATTTTTGCA
TTGTGCCTTTGTCATCATGTTGCATGGTCGGCTCCGCTGTCTGCGTTGTT
TCCCGATCTTCTAACCCTCACATATACGATCCGTTATAGACCCTCGAGAA
TTCACGCCCTTTTTCGTCCCTACGGCCATCTATCTTGGCCATACAACCGC
GCTATCCCTGCCTCTGCTTGACTCCAATGATACGCCATCCCAGCTGACCC
GTGACGTGCTCGTGTTTCGTCGCGTCGTTCTTCGGGGCGTGGCTTCAGGG
GTCGGCCGATCGACGTGTACGAAAGAGATCTGCTCCACTGTCCTCGCTGG
ATAGAGCTTGTGGCTGAGACGAAGAGACAGGTGCGTTCCAAGACATGGTT
CGATTCGTTTCATCCTCTTTTCGCACGGGTCTCTTTTCTGGTGTTTGCTG
CAGCTTGCCTCCCTGCAACGTTCCCCGCTCCTGCTTTGCGCTTCTGCTGT
TGATCGCCCGTGTCGTGCAGATGGACAATCCTCCGGTGGTGGTGGAGGGG
GGAATGGGCACCATCTGCTACCCGAGCGGCGACATTTTCGAGGGACATGT
GAGCAGAGGCTGCGTACCCGAGTACGCATTACGCACCATCTGCAGGATGC
TCATCAGAAACAACTCGGAACGCCGTTGTACGAAGGCCTTGGGTAGGCTA
GCCTCGCAGACTGTTGTGTGCAACGTTAACCTTAAACTAGACATCATTGT
CGTTCCCTTGATATTTTGAACCTCTGCCCCCTATTCCAATCCGATTCAAC
GGCGTACCCACGTGTGGCGGCCTTTTTCATTTGTTCCCCAACTCTCCTTC
ACGATGTGTCTTTTGCCGCGATGAACCGTGTTGGTCACCCAGGTCGATTC
TCTTATCCGAACCGCAAAAGCGGGAGAAGTCCACGTGGCGGCGGCGTCTT
ACCCACCACAGAACGCGAGACCCTTCGTAGATGCTGAGCTGTCTTCTTCC
GCCGACGCTACCGCGTCCTCTCGGGGATTAGAGGGCAGCAGTAGCGGCGG
TGACGGCGGAGGGGCCGTGACCCAAGACGTGCGTACGGTCTCGGGGCTGG
TGTCCCTGACGATAGCTTGCTTGGAGGAAGGGATGTCCGACGAGGCGACC
ATCCTGCAGCGGCACCTCCAAAGCCCTGACTTCGGGCACCCCCTCCTGAG
GCTGGCCTCGCCGTCTGGCAACGAACCGGACCACCCGCACCTTCCCGATG
ACCCCGAGGTGCGTGGTGGTGCTCATGTTTCGTTTTTGTGATCTGGAACG
TGGGGTTTCCACACTAAACGCCAATCGAACGTCCGTAGCAGATGCATTCA
CCGGAACAATCGTTTTTGTGAGAGCATGAGTGTTGAGTCTTTCCAACCTC
TTTGTTCTCGAAACCTTAATCTATGAGCGGTGAGAGCGAGGTACGTTCTC
TGTTGGCCGGGAAGAGGGAGAACGGATCGTCACACGCTCTCGAGGCCTGT
TTTGTAACCCCCAGCTCCCGATTTGCCTCACCACGTCTCGCTGCTCGCAC
CGCACCGATTTTTGGGGTATTCGCGGCGTCCTAATTTTTACCTAAAATGG
TGCGCGAACGTACAATGCTGCAGGCTTTGTCCGAGGGAGACGCAGCGCAA
CTGCCATCGATGTCGCGCTGAAGGCAGTAGGAAGTCTTTTTTGCTGGCGT
ACTCTCTGAACTGAACTGACCTCCAAGCGTAAGAACCTGCCTCTCTGTCG
CTCCCATGGCTGGCTTCGCAGATGAACCCGGAGTTGCTTCGAGCAGAAGA
AGAGCTGACCGAGGAGCACTTAGCCCTCGGAGAGAGGGGAGCGAAGGAGC
TCATGCACGACAGGCGTCGGGCCCAGCTAGACGTATACCTCATTTGCGCC
GCTTATCGACGCAACCTGCCCGAAGTAGATGACGCTGCCAGCAGAGGCGG
CTGGCATCTCAATGAGGAGGACGGTCGGATTCTGGACGAGATGATCAGAG
AGGCGGCGGCGATGGACTCGCCGTGGTCTTGATGTCATGCACCAGTTTGA
TGCGGGTTCCTCCCCTCAATGGAGCTTGATGAGAAAAGGATAAAACAGCG
GCCTTAACGGTAATGCTGTTTGCGACACAGCATAGAGTGCTTCGAAACCA
TATTTTCTGTGTCCCTAGGGCTCTCAGCTGTCGCGCAAGCTTTCGTTCGT
CCCATAGTTACCTGTGGTTGCCGAGACCTGGGCCTCTTGACTTGCTGTAC
ACCATCTCCCAAACCGCGTGCCCCCTAGGTCGTGTAACTATACATCGCCT
GGTACTGGAAAAATAGCTGACTTGGCGTCAGTATGAAAAGTGTCCCCACG
GTTTTGGGGACACTTTTTTATTCTGAAGCCAAGTCACCCTTTGTGTGGCA
AGGAGCTCAGATTCTTTGGAGGGACTGTAGCTCCTCGACCAATGTCTGGA
AAAGGCATGTGCGATTTTGTTTTTTGCGGGGACTGGGTACTAGGAGGGTT
AACAACATACGTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:244103..247915-

>mRNA_Ecto-sp6_S_contig82.17418.1 ID=mRNA_Ecto-sp6_S_contig82.17418.1|Name=mRNA_Ecto-sp6_S_contig82.17418.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1548bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:244103..247915- (Ectocarpus species6 EcLAC_371)
ATGAAAAATCATGCCTTCGGGACCGCCTTGGTCTCACTATTGGCAGCTAC
GGCAACCAAGGGCGACGCGGCTAGACGCTCCTCGCGCCCTGCTTTCACCT
TCACGGCACCGGCGGCCACGCCGCGTTGCCTGAGCAACAGCATTAGCAGC
AACCGCCTCGGGTGCAGACCTTGCTCGAAATCGCAACCAGCGACGAGACC
TGGAGGATGGCCCCGTGTGGGTACCCGCAGACGAGTAGCAAATGTTGCTG
TCCTAGGCTTGGCTGATGATGGAGCGGCGGGGCCAGGCTTAGGTGAGACT
TCGCTACCAGACGGCACAAGCCGGGGGCGGCGGCAGAGGCACAGACCGCG
ACCGAGCGGGGGCGGGAAGCGAGGAGGTCGGTTCAATAGGGCGGCCGGTG
TAGACGGGGCAGGACAAGCGGTTCGATGTGCAAAGCTTGGTGCCGCTTCG
GTACCGTCGGATTTCGGCGGGACGGAAGAGGCGGAGGATAGATGCATCAG
GCGACTCGATTTGGCGGTCCGAAGAGTGTTTGCCGATTACTATTCCTGCA
CTGACGTGCGGGAGACGACAGAATCACTGGGCGTGTTTCTGAAGGAGGCT
ACTGCTGCTCTGGAGGTAGACTGTTCCACCTCCCGCTCCGGAAGCGTATT
CCCCGCCCACCTCGCCTCCCGACTGAAGGCCCGGCTGCTGCAGACCGCGG
ATCGGCTGAACTACCACCTGGACGGGGACAAGCCGATGGTCCTCTACCGT
CTTTGGAACAGGGGTCGGCCGATCGACGTGTACGAAAGAGATCTGCTCCA
CTGTCCTCGCTGGATAGAGCTTGTGGCTGAGACGAAGAGACAGATGGACA
ATCCTCCGGTGGTGGTGGAGGGGGGAATGGGCACCATCTGCTACCCGAGC
GGCGACATTTTCGAGGGACATGTCGATTCTCTTATCCGAACCGCAAAAGC
GGGAGAAGTCCACGTGGCGGCGGCGTCTTACCCACCACAGAACGCGAGAC
CCTTCGTAGATGCTGAGCTGTCTTCTTCCGCCGACGCTACCGCGTCCTCT
CGGGGATTAGAGGGCAGCAGTAGCGGCGGTGACGGCGGAGGGGCCGTGAC
CCAAGACGTGCGTACGGTCTCGGGGCTGGTGTCCCTGACGATAGCTTGCT
TGGAGGAAGGGATGTCCGACGAGGCGACCATCCTGCAGCGGCACCTCCAA
AGCCCTGACTTCGGGCACCCCCTCCTGAGGCTGGCCTCGCCGTCTGGCAA
CGAACCGGACCACCCGCACCTTCCCGATGACCCCGAGATGAACCCGGAGT
TGCTTCGAGCAGAAGAAGAGCTGACCGAGGAGCACTTAGCCCTCGGAGAG
AGGGGAGCGAAGGAGCTCATGCACGACAGGCGTCGGGCCCAGCTAGACGT
ATACCTCATTTGCGCCGCTTATCGACGCAACCTGCCCGAAGTAGATGACG
CTGCCAGCAGAGGCGGCTGGCATCTCAATGAGGAGGACGGTCGGATTCTG
GACGAGATGATCAGAGAGGCGGCGGCGATGGACTCGCCGTGGTCTTGA
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