mRNA_Ecto-sp6_S_contig82.17411.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17411.1
Unique NamemRNA_Ecto-sp6_S_contig82.17411.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17411.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.410e-59
Identity = 114/147 (77.55%), Postives = 116/147 (78.91%), Query Frame = 1 
Query:    1 MVKSVQAVLGGTEEPGGLGEGFVEACLSVLGWSPQGVIDAVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRVDKDLAATEARRLIAMEKRQEDDAYLLSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSDFETVRRVNQLVR 441
            MVKSVQAVLGGT EPGGLGEGFVEACLSVLGWSPQGVI+AVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRVDKDLAA EA+RLIAMEKRQEDDAYLLSR                             RGSDFETVRRVNQLVR
Sbjct:  346 MVKSVQAVLGGTGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQAWREYDDREVDVGGGGG---RGSDFETVRRVNQLVR 489
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BLAST of mRNA_Ecto-sp6_S_contig82.17411.1 vs. uniprot
Match: A0A836CBT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.920e-5
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MVKSVQAVLGGTEEPGGLGEGFVEACLSVLGWSPQ 105
            M+  VQ V GG E+ GG+GEGFVEACLS++GWSPQ
Sbjct:  737 MIAEVQEVFGGPEQEGGVGEGFVEACLSLMGWSPQ 771
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6J2_9PHAE2.410e-5977.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBT6_9STRA2.920e-568.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:125031..128183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size810
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-23_002680.1
Cds size810
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350453.5075274-CDS-Ecto-sp6_S_contig82:125030..1253461682350453.5075274-CDS-Ecto-sp6_S_contig82:125030..125346Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 125031..125346 -
1682350453.5175476-CDS-Ecto-sp6_S_contig82:125933..1260731682350453.5175476-CDS-Ecto-sp6_S_contig82:125933..126073Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 125934..126073 -
1682350453.5338633-CDS-Ecto-sp6_S_contig82:126542..1267101682350453.5338633-CDS-Ecto-sp6_S_contig82:126542..126710Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 126543..126710 -
1682350453.5435896-CDS-Ecto-sp6_S_contig82:127390..1274711682350453.5435896-CDS-Ecto-sp6_S_contig82:127390..127471Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 127391..127471 -
1682350453.5528073-CDS-Ecto-sp6_S_contig82:128078..1281831682350453.5528073-CDS-Ecto-sp6_S_contig82:128078..128183Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 128079..128183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17411.1prot_Ecto-sp6_S_contig82.17411.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 125031..128183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17411.1

>prot_Ecto-sp6_S_contig82.17411.1 ID=prot_Ecto-sp6_S_contig82.17411.1|Name=mRNA_Ecto-sp6_S_contig82.17411.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=270bp
MVKSVQAVLGGTEEPGGLGEGFVEACLSVLGWSPQGVIDAVLEDRLPPQV
ANLNRGLRRAWKGKKGDLDKAYRVDKDLAATEARRLIAMEKRQEDDAYLL
SREYDDDYDDQACWWWLCYDDREVDVGGGGGRGSDFETVRRVNQLVRHEE
EEDAWWENNKNTNLSVAAPKGGGWRARSHREQEGEEAEEKDAQEQASSAG
GGGGRGGGGRGVGGRGGGRGGGPPPGGRGREGGGGGRGGGGNNRSGSRGR
GRGGGSGGRDGGGGGRGGGG
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mRNA from alignment at Ecto-sp6_S_contig82:125031..128183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17411.1 ID=mRNA_Ecto-sp6_S_contig82.17411.1|Name=mRNA_Ecto-sp6_S_contig82.17411.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3153bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:125031..128183- (Ectocarpus species6 EcLAC_371)
ATGGTGAAGAGCGTGCAGGCTGTGCTGGGGGGCACGGAGGAGCCCGGCGG
GCTCGGGGAAGGGTTTGTGGAGGCGTGCCTGTCGGTGCTCGGGTGGTCGC
CGCAGGTGTGTTTTGTGTTTATTGTGCTAGCGTCGACCGCGCTAAACGGC
TGGCAAAAGAGAAGACGTCAGTGCCAACTGGTGTGATGAACGTCCCCGGA
AGGGGGATCGAAATTTTTGAAGAATGCTCAGTGCACTGAGCATTCGTGTG
TTTTTTTGTACTGTGTATCGACCGCGCTGACCAATGACTAGACGTCAGTT
CTTCTAAAGGCCATGACCTATGTGTGTGTTGAGAAAGGGGGGGTGGGGGG
GCAGGGAGCACAGGATTAGCGATCGCGTCCGACAAGCTACACGCGCGTCG
TTGGTGGACCGGCGCTTGACCATGAAAGACTGCATACCACAGATTCGTAG
CATTTTTTGTTTTTCGTTCGATGTGGTTTCGCTGGGCTCTTGGAGTCTAA
ACAAACGTCGAGCGTGTGGGCTGTTCGAGCTTGATAGACGTCACGGCCGG
CAGTGGTTGGGCTTTTCGAGCTTTCTATTTTTTGCATCATGCATCACCCC
TTGTGACAACACTGCCGTACTTTTGTGAGCCCGTTCAGGATCGCACCCTT
GCGTGAAGCGTTTTTTTTTGTTTGTTTCTTTCGCGCGTGTGCTCGTTGCA
CGCTTTTCCCAGGGAGTGATCGACGCCGTTCTAGAGGACCGGTTGCCACC
GCAAGTTGCCAACCTTAACCGTGGGCTGCGGCGGGCGTGGAAGGTGATAA
AAGTAGGAAGCCGCATCCTCTTTGAAATGACCGTTGTGTGAAAAAATTTC
CATGGTTGGAGACGCACTTTGCCCTGGGCTTCTGCTGCTGCTGCTGCTGT
CCACCCTCTTTTTTTCTCTTTTTGCTGTGTACTATGGCATCACGTTGAAA
CTGCAGTTGCAAAGGAGTGAATGGAAAACCGTAGAACTCCGCGGCTGTTG
GGCTTCGCTTTGCCTCCGATGTGAGCGTGGCCTTTTGAGGGGGAGGGACT
GCCGCGGCTGGGGCTTTTGATAACACCTCACGTTGTGGAAGGATCCGTCC
CCCCGAGGCTTGAACTTTCCGTACAAAACCAAGCAACCCCCACGCTTGTG
TCCATTGGTCGTCTACGGTGGTTGGGCTTCTTTTTTTGATGCAACAAGGC
ACAAGAGAGCAGACGCCACACGCATGAAAAGGCATGAGTCCTTTGCCTTT
ACCTAGCATGCTGCTCGATTCCATTCCTCTGTTGACCAAACAGGCGGCGA
AACTATTGACATGTTGTCCGATTTTCTTCGCGTACTAGCCAGGGGAGTTT
CGTTTTTCTTTTCTTTTTTGTAGACATACTTCATGTACAATCCAAGACCC
GTTCTTTTTTTTCCTTCTGTTTTTGTCTGTCTCACAGCTCCCCCGCCTCC
GTTCCGCCGCTTATTTTTTCCAGGGCAAGAAGGGAGACCTGGACAAGGCC
TACCGCGTGGACAAGGACCTCGCGGCCACGGAGGCGAGGCGGCTTATCGC
CATGGAGAAGCGGCAAGAGGATGATGCTTACCTCCTCTCCAGGGAGTACG
ACGACGACTACGACGACCAGGCATGTTGGTGGTGGCTTTGCGTTGTTGTC
ACCAACCCGTGCGCTGATGGTGTTGTTGTTGTGCTTCTCTCTCTGTCCTG
GTGTTGTTCGTTGGTGTTTTTCGGACGACATATGTGGGTGGGGAGAGACG
ACTCGTTTGTTGCAGGGGTGTCGGCGCTGTGTTTTGGTTGATGCTTTTTC
CCAGCTGTGGATATGGGCTTCCGTCTCGCCGTGTCTGCGGGGGAGAAGCC
TCCTGTTCTATTCTTCTTCCCATAGGGTGCCGTGCTTCGGCGCTTGTATC
TGTGTGCTCCCGCTCCTTCTTTCGTGTGATTGCTGAGAAACGCTGAACAG
CAGGGCGGTAGGTTTACACACGTTTCTATTCTGAAACACTTAAACTTCGC
ACTTGTTTTTTTCCGGCTTATATTTATGTCCCGAAAATCTCCCTTTCGTT
CTTCGCACCGTGGATGCTGCTGCTGCTGCTACTGCCGCTGGTGCTGCTAT
TTCTCTGCAGTATGATGACCGCGAGGTCGATGTGGGCGGCGGCGGCGGCC
GCGGGTCCGACTTCGAGACGGTGCGAAGGGTCAACCAGCTGGTTCGGCAC
GAGGAGGAGGAGGACGCCTGGTGGGAAAACAACAAGAACACCAACCTCAG
GTTGGTCACCGGTTCCCACGTAGAATCAAACAACGCTCGTATTTCCATGC
GCCCGAGTTTTTTTTGTTGTTGTTGCCATCACTTCTCTGTTTGGTATTGC
AGCGCGATGACGCGGTTGTTTGTTTACCGGCGTGTTGGGCGGGTCGTGGT
GTGTTGGGCGGGCACGCCTGCTTGCCTTTTCCTGTCGCGCGCTGTCGGGT
GGAGAGGTGGAATGGGAACCAGTAGTAGGCGTTGCCGCTCTCAATCCTAC
TATGTACCATGGTTATTCTTTGAAATTGCAACAACCAGCAACCAGGACTT
GTTCCGGCCACACGATGCCCGCCGGTGGGCCTCGCCACACGAATGGACCG
GCTCTTAGCTGCTTTCCTGTCGAGCCGAAGAGAATGCCTAGCAAGAAGAC
GGTACGCACGCGCAAGGTTTTGGCGTTTACACACGCGCAAGGTTTTGGCT
TTTTGCGTCTTCGGTCAGCCGATCGGTGGACCGGTCCCAGATAAAAAAAC
TGAACAGAGAAGGGTGCTTATGCCGTACATACCCACACGAGTGCACGCCC
TAACCCCCCTGGATCTCTTGACGCTCTCTCTCCGCAGTGTCGCCGCTCCT
AAAGGTGGGGGTTGGCGGGCGAGAAGCCACAGAGAACAAGAAGGAGAAGA
GGCGGAAGAGAAAGACGCCCAAGAGCAAGCTTCTTCTGCCGGTGGTGGCG
GCGGCCGCGGTGGCGGCGGCCGCGGCGTCGGCGGGAGAGGAGGCGGGCGG
GGAGGCGGGCCACCCCCAGGGGGCAGAGGGCGAGAAGGCGGCGGAGGCGG
CCGCGGTGGCGGCGGCAACAATAGATCGGGGAGTAGGGGTAGAGGTAGGG
GGGGTGGCAGCGGCGGGAGGGATGGAGGGGGCGGCGGCCGAGGGGGGGGG
GGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:125031..128183-

>mRNA_Ecto-sp6_S_contig82.17411.1 ID=mRNA_Ecto-sp6_S_contig82.17411.1|Name=mRNA_Ecto-sp6_S_contig82.17411.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:125031..128183- (Ectocarpus species6 EcLAC_371)
ATGGTGAAGAGCGTGCAGGCTGTGCTGGGGGGCACGGAGGAGCCCGGCGG
GCTCGGGGAAGGGTTTGTGGAGGCGTGCCTGTCGGTGCTCGGGTGGTCGC
CGCAGGGAGTGATCGACGCCGTTCTAGAGGACCGGTTGCCACCGCAAGTT
GCCAACCTTAACCGTGGGCTGCGGCGGGCGTGGAAGGGCAAGAAGGGAGA
CCTGGACAAGGCCTACCGCGTGGACAAGGACCTCGCGGCCACGGAGGCGA
GGCGGCTTATCGCCATGGAGAAGCGGCAAGAGGATGATGCTTACCTCCTC
TCCAGGGAGTACGACGACGACTACGACGACCAGGCATGTTGGTGGTGGCT
TTGCTATGATGACCGCGAGGTCGATGTGGGCGGCGGCGGCGGCCGCGGGT
CCGACTTCGAGACGGTGCGAAGGGTCAACCAGCTGGTTCGGCACGAGGAG
GAGGAGGACGCCTGGTGGGAAAACAACAAGAACACCAACCTCAGTGTCGC
CGCTCCTAAAGGTGGGGGTTGGCGGGCGAGAAGCCACAGAGAACAAGAAG
GAGAAGAGGCGGAAGAGAAAGACGCCCAAGAGCAAGCTTCTTCTGCCGGT
GGTGGCGGCGGCCGCGGTGGCGGCGGCCGCGGCGTCGGCGGGAGAGGAGG
CGGGCGGGGAGGCGGGCCACCCCCAGGGGGCAGAGGGCGAGAAGGCGGCG
GAGGCGGCCGCGGTGGCGGCGGCAACAATAGATCGGGGAGTAGGGGTAGA
GGTAGGGGGGGTGGCAGCGGCGGGAGGGATGGAGGGGGCGGCGGCCGAGG
GGGGGGGGGT
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