mRNA_Ecto-sp6_S_contig8.17194.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17194.1
Unique NamemRNA_Ecto-sp6_S_contig8.17194.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig8.17194.1 vs. uniprot
Match: A0A7S3M7S9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7S9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-5
Identity = 26/87 (29.89%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   64 TLVVRAIDGEWVMGEDLILPVTGDETIVEIQQVVKCMKGVPLTRMVAFKEESESRISDKHMTWSLSRNGLYAGAVLVLRPSRPNQWL 324
            ++ +R +D +WVMGED ++ +    T+VEI+Q V+  +G+   R +  + + +   +++ + W+L R G+Y G V+ + P+    WL
Sbjct:   22 SVTLRPVDKDWVMGEDWVVDLHNQTTMVEIRQYVETHRGISKHR-IQLRMKGKVCPTNREI-WTLRRLGIYDGYVIQVEPTLSGAWL 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3M7S9_9STRA1.250e-529.89Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:2692056..2693759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size591
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_004770.1
Cds size591
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350430.8243513-CDS-Ecto-sp6_S_contig8:2692055..26921791682350430.8243513-CDS-Ecto-sp6_S_contig8:2692055..2692179Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 2692056..2692179 -
1682350430.8344324-CDS-Ecto-sp6_S_contig8:2692536..26927091682350430.8344324-CDS-Ecto-sp6_S_contig8:2692536..2692709Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 2692537..2692709 -
1682350430.8437414-CDS-Ecto-sp6_S_contig8:2693125..26932601682350430.8437414-CDS-Ecto-sp6_S_contig8:2693125..2693260Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 2693126..2693260 -
1682350430.8528492-CDS-Ecto-sp6_S_contig8:2693600..26937591682350430.8528492-CDS-Ecto-sp6_S_contig8:2693600..2693759Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 2693601..2693759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17194.1prot_Ecto-sp6_S_contig8.17194.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 2692056..2693759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17194.1

>prot_Ecto-sp6_S_contig8.17194.1 ID=prot_Ecto-sp6_S_contig8.17194.1|Name=mRNA_Ecto-sp6_S_contig8.17194.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=197bp
MKRPDPIGNDDDDDEEEEEVRTLVVRAIDGEWVMGEDLILPVTGDETIVE
IQQVVKCMKGVPLTRMVAFKEESESRISDKHMTWSLSRNGLYAGAVLVLR
PSRPNQWLWHPLEWYEERLLKAAEDVASSSPWAEMGTGCPLSILEKEVLV
PPPLERDSLTGILRRFPDRLRLQLDVVSQKFVAFPNKDEMLLPSSY*
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mRNA from alignment at Ecto-sp6_S_contig8:2692056..2693759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17194.1 ID=mRNA_Ecto-sp6_S_contig8.17194.1|Name=mRNA_Ecto-sp6_S_contig8.17194.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1704bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:2692056..2693759- (Ectocarpus species6 EcLAC_371)
ATGAAACGGCCGGATCCCATTGGCAATGATGATGATGATGATGAGGAGGA
GGAGGAGGTTCGTACACTGGTGGTGAGGGCAATCGACGGGGAGTGGGTAA
TGGGAGAAGATCTCATCCTGCCCGTCACTGGGGACGAGACGATCGTAGAA
ATCCAACAGGTGACATGAGTATGTATGCACATCCTTGAGACGGGGTTTGA
GGTCATCATCTTTCCAGAAGCTGATCCTATGGGTATGCTAGCGTTATCGG
CACCAAGACACTGCAACAGCAATAGAGATGTAACAGGTTGTCTTCGCGCG
GAGCGCAACCGACCGTGAAAGATACACAACAAATGTCCTGAGCTTTCGAG
GTCACTTCAAATGGACTTCAGAATGCCGTGAGCAGTCCTAATAAGTTTCG
CCGTGTTACGTTGACGCGTAACGTGGGGCGTGTTAGACCTCGGATCTGGA
GTTCCCGCTGACCGTGTTCAGTACTACGCGGTTTGTTTGTAAACAACAGG
TTGTCAAATGCATGAAGGGAGTACCGCTCACTCGCATGGTTGCCTTCAAG
GAGGAAAGCGAGTCGCGCATATCCGACAAGCACATGACCTGGAGCTTAAG
CCGTAACGGCCTGTACGCTGGTGCTGTTCTCGTTGTGAGTGTCGTGCTGT
GGCAATATCACAAAAAAAGTGGCATGTGAAACAGGACTGCGGGTAGGAGG
TGTGAATCGTCGAAATTGCGCCCGGGCTCCGACGTACACAGGAAGTTGCA
AAGAAAAATCCTTCATGTAGGCAATGTTCCAATGATGTGATCCTCGTTTG
ACCCTTGCCAGTCTTCGGCGCTGAACATGTACCTCCATGAAAGTTATCCT
TGTATATATTCACAGTAGCATCTTAGTCGAGTTTTCTGCCATGGACGAGA
GAGGCAGTTACCCCTGGTTCAATATGAATCCTGTATCACTGGTATCGTGC
TATTGCTAGAGAGAAGAAATACATAGCGAGCGTTCGTTTCCGATATTACA
TCAGCATCACAAGTCACACGCTGAATGACGAAACTTGCTGTGCGACACAG
CTACGACCGAGCCGACCCAACCAGTGGCTTTGGCACCCTTTGGAGTGGTA
CGAAGAACGCCTCCTGAAAGCCGCGGAGGACGTGGCCTCTTCGAGTCCAT
GGGCGGAGATGGGGACCGGATGCCCCCTTTCTATCCTGGAGAAGGAGGTT
CTAGTACCGCCACCGCTCGAACGGTGAGTTGTTTGCAGGAACAGCTCACC
CTGCTACCCAAAGTGGCTTCTTGGTCAGTGAAGACGTATTTCAAAGCCAT
CAGACGACCCAAGGACCTCTCGAGGGAACAAAGCTGCCTACAAACGTGTT
GAATTGTGTTTCAGGTACATCGCGCCCTAGAGACAGCGAACCGTTGCAAA
CTTTCTCAGTTTAGGAGTAATGACTTGGGGAATGACTCGCTAGTGCCGTT
CCGCGCATACTTTTATTTCACATGTTCCCTTCAGTGCGCTCGCATTCCTC
TCGCATAGCATTGCATGAGCCCTCCACGTTACTGCGTCGTTGTACGCACT
GTATCATGGCATGTAATTCTGCTGCTGCAGGGATTCGTTGACGGGCATTC
TGAGGAGGTTTCCCGACCGACTTCGACTGCAGCTGGACGTCGTGTCTCAG
AAATTCGTGGCGTTTCCCAACAAGGACGAGATGCTCCTGCCGTCGTCCTA
CTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:2692056..2693759-

>mRNA_Ecto-sp6_S_contig8.17194.1 ID=mRNA_Ecto-sp6_S_contig8.17194.1|Name=mRNA_Ecto-sp6_S_contig8.17194.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:2692056..2693759- (Ectocarpus species6 EcLAC_371)
ATGAAACGGCCGGATCCCATTGGCAATGATGATGATGATGATGAGGAGGA
GGAGGAGGTTCGTACACTGGTGGTGAGGGCAATCGACGGGGAGTGGGTAA
TGGGAGAAGATCTCATCCTGCCCGTCACTGGGGACGAGACGATCGTAGAA
ATCCAACAGGTTGTCAAATGCATGAAGGGAGTACCGCTCACTCGCATGGT
TGCCTTCAAGGAGGAAAGCGAGTCGCGCATATCCGACAAGCACATGACCT
GGAGCTTAAGCCGTAACGGCCTGTACGCTGGTGCTGTTCTCGTTCTACGA
CCGAGCCGACCCAACCAGTGGCTTTGGCACCCTTTGGAGTGGTACGAAGA
ACGCCTCCTGAAAGCCGCGGAGGACGTGGCCTCTTCGAGTCCATGGGCGG
AGATGGGGACCGGATGCCCCCTTTCTATCCTGGAGAAGGAGGTTCTAGTA
CCGCCACCGCTCGAACGGGATTCGTTGACGGGCATTCTGAGGAGGTTTCC
CGACCGACTTCGACTGCAGCTGGACGTCGTGTCTCAGAAATTCGTGGCGT
TTCCCAACAAGGACGAGATGCTCCTGCCGTCGTCCTACTGA
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