mRNA_Ecto-sp6_S_contig8.17109.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17109.1
Unique NamemRNA_Ecto-sp6_S_contig8.17109.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig8.17109.1 vs. uniprot
Match: D7G3P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P9_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 5.780e-75
Identity = 130/148 (87.84%), Postives = 132/148 (89.19%), Query Frame = 1 
Query:  217 MIMDDEAPAYNAGLLRDTTAASPAAPSTVARVSPQNRQVQFSRSEAEMLRMKEELLNLELPRIDDGAEEESGEATWRNACEMVKGVVGYDGYRLQRRNKLKLYSGTAAGNRPLRNRWRTVLIVCDQGGKPDRRSRVVQNSPKDTTSKK 660
            MIMDDEAPAYNAGLLRDTTAASPAAPSTVARVSPQ+R+VQFSRSEAEMLRMKEELLNLELP IDDGAEEESGEATWRNA            YRLQRRNKLKLYSGTA G RPLRNRWRTVLIVCDQ GKPDRRSRVVQNSPKDTTSKK
Sbjct:    1 MIMDDEAPAYNAGLLRDTTAASPAAPSTVARVSPQDRKVQFSRSEAEMLRMKEELLNLELPHIDDGAEEESGEATWRNA------------YRLQRRNKLKLYSGTADGKRPLRNRWRTVLIVCDQDGKPDRRSRVVQNSPKDTTSKK 136
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BLAST of mRNA_Ecto-sp6_S_contig8.17109.1 vs. uniprot
Match: A0A6H5JXK5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.010e-18
Identity = 53/132 (40.15%), Postives = 76/132 (57.58%), Query Frame = 1 
Query:  346 SEAEMLRMKEELLNLELPRIDDGAEEESGEATWRNACEMVKGVVGYDGYRLQRRNKLKLYSGTAAGNRPLRNRWRTVLIVCDQGGKPDRRSRVVQNSPK-DTTSKKLGCKFQVMLNWPAQKQAPVISTACSC 738
            S  ++  ++ E+ NL  P ++ G++++ GEAT  NA  M+K  +G  GY LQR NK KLY+         RNRW  V IVC Q G P  R RV   S + +T+S+K+GC F+V L W A   AP+++    C
Sbjct:   83 SPEDLATLQGEVENLLFPNLEQGSQQQFGEATIENAVGMLKAKIGR-GYPLQRHNKTKLYTRKQEAEHGRRNRWNYVEIVCPQAGSPRARERVANASARRNTSSEKIGCAFEVGLWWAANSPAPIVAKGKLC 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3P9_ECTSI5.780e-7587.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXK5_9PHAE3.010e-1840.15SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:1750314..1754636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size809
Hectar predicted targeting categoryother localisation
Exons5
Cds size807
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350420.352044-CDS-Ecto-sp6_S_contig8:1750313..17506651682350420.352044-CDS-Ecto-sp6_S_contig8:1750313..1750665Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1750314..1750665 +
1682350420.362967-CDS-Ecto-sp6_S_contig8:1751050..17512171682350420.362967-CDS-Ecto-sp6_S_contig8:1751050..1751217Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1751051..1751217 +
1682350420.370777-CDS-Ecto-sp6_S_contig8:1751443..17515841682350420.370777-CDS-Ecto-sp6_S_contig8:1751443..1751584Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1751444..1751584 +
1682350420.3784466-CDS-Ecto-sp6_S_contig8:1752100..17521691682350420.3784466-CDS-Ecto-sp6_S_contig8:1752100..1752169Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1752101..1752169 +
1682350420.3883693-CDS-Ecto-sp6_S_contig8:1754557..17546351682350420.3883693-CDS-Ecto-sp6_S_contig8:1754557..1754635Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1754558..1754635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17109.1prot_Ecto-sp6_S_contig8.17109.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 1750314..1754635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17109.1

>prot_Ecto-sp6_S_contig8.17109.1 ID=prot_Ecto-sp6_S_contig8.17109.1|Name=mRNA_Ecto-sp6_S_contig8.17109.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=269bp
RKGIAAARADTRYPRHGLFRHAQSTTRWCGGHYYTVCLSADSTVTSIEAA
ATPRGMAQRGDSEAHGQGGEEAMIMDDEAPAYNAGLLRDTTAASPAAPST
VARVSPQNRQVQFSRSEAEMLRMKEELLNLELPRIDDGAEEESGEATWRN
ACEMVKGVVGYDGYRLQRRNKLKLYSGTAAGNRPLRNRWRTVLIVCDQGG
KPDRRSRVVQNSPKDTTSKKLGCKFQVMLNWPAQKQAPVISTACSCRSLL
YVVELALEKEDDTTPPYRG
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mRNA from alignment at Ecto-sp6_S_contig8:1750314..1754636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17109.1 ID=mRNA_Ecto-sp6_S_contig8.17109.1|Name=mRNA_Ecto-sp6_S_contig8.17109.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4323bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1750314..1754636+ (Ectocarpus species6 EcLAC_371)
AGGAAGGGTATCGCAGCAGCACGCGCTGACACGAGATACCCGAGGCACGG
CCTCTTCAGGCACGCTCAGAGCACCACCCGTTGGTGCGGAGGACACTACT
ACACTGTTTGCCTCTCCGCCGATAGCACCGTCACCAGCATTGAGGCTGCC
GCCACCCCGCGAGGCATGGCGCAGAGAGGAGACTCAGAGGCCCATGGTCA
GGGGGGTGAAGAGGCTATGATCATGGACGATGAGGCACCTGCTTACAACG
CCGGCCTACTTCGCGACACCACCGCCGCCTCGCCCGCAGCTCCAAGCACT
GTTGCTAGAGTTTCTCCACAAAACCGCCAAGTCCAGTTCAGCAGATCTGA
AGGTGCGATAGCGTACCACGAGCAGTCAACTCTGGTCTCGTAAGTGATAG
CGGCATAGACCTTAGACATATGTCGATGGGCAGGAGACTGCTGCGTGCCG
TGTGGATGGGATGGGCGGGAGAGTGCTGTCTCCGCCTTTCGGAGCTAGAT
GTCATTGTTTTCAACTGTCACTCAAGATCACTCAATTTCGGCATTATCTG
CTTGCACGCATGCTTATTCGTAGGGCTCGCCGCCTCCTGGGGTTGATGTT
GTCGTTATTCTCGCCTTTTCCAAGCGACGTCGTTTTTTGAATTTTCCACT
TTTCCATGCATGCATGCATGCATGCATGCATGCACCAGTAGTGCTGCCCG
ACCTCCTGCCTGCCGGTTTGTTGTCTTGTGTATGTAGCGGAGATGTTGCG
GATGAAGGAGGAACTCCTCAACCTGGAGCTCCCCCGCATTGACGATGGAG
CGGAGGAAGAATCCGGCGAGGCAACATGGAGAAACGCCTGCGAAATGGTG
AAAGGGGTCGTAGGGTACGACGGGTACAGGCTACAACGGCGAAACAAATT
GAAGGTAGGCTTGAAACTGCTGTGGGTTTGGTTCGATGCGGCGGTTTGAT
GGATTTTTCGCCCTGTCGTGCGCAGGCAGAGCACTCTGCGCTCGCTGACT
ACGCGGGGCGTCCCGTCAACTGCACGAAACGACGACATACGCACCTTGCA
TGCGTCCAAACCAACAGCAGTGGCACGTTGTTCATGTACCCTCCGTTGAC
ACCGGAAAATCCGTCTCGCTGCCCTCCCAGCTCTACTCTGGAACCGCCGC
TGGAAATCGGCCGCTAAGGAACAGGTGGAGAACCGTCCTCATCGTTTGCG
ATCAAGGTGGAAAACCAGACAGGCGGAGCCGTGTCGTCCAGAACTCGCCC
AAGGACACTACATCGAAGAAGGTGCTACTTTGAAGTGATCCGATGTTGGA
GCAGATGTTGGGCAGCTACCACTGCTATAGATACTGCTGTCGATTTGATT
ATGTGTAGGAAGTCGATTTGATTATAGCTCGTCGAAGGACGGCACAACGT
TGAGGGTGAcctctgcgCTGCACTAGTATTGTGTAGTATTGTCAGACAAA
GCAGCCGACAACCGACGAAGGTCTGATGAAGAATTCGATCAATACATAGT
CTCATGGAAAGATAACCCGCTTGGCTGTTGGGCTTGCGTGTGATGTCGAA
GCTCCTCTACAGTAGCCCTGAGGGACAACCATCTGCGCTGTCAACTTGCT
CGGTATCACACCCCAGAAAGACATCTAGGAACGCCGAAGCTACTGTTGTA
TGTCTTGGCAAACATGTTCCTTCACGGATTTTTTCAAGACTGATGGCGGA
CCCGACGGTGCCGGTGCTGACAGCTGGCTTACCGCCGCACTACGCCGTGA
TTGCGCACTTTCCCGCCGTTGCTTGGTCGACTGTTAGTTGGGCTGCAAGT
TTCAGGTGATGCTGAACTGGCCAGCACAAAAACAAGCTCCTGTCATTTCG
ACGGCGGTGAGTCCACTTGCGCAGATAGAGTGGCTTGGCAGCATCGAGTG
CCGTTGGCTGCAAGATATTCCCGAGCGCAATTGTCTCGCTCGTGGTACAG
GCGTAGCAGCGCCGCGTGTTAGAACAAATGTTCATTCGGTCGTCTATGGA
CACACACCCCATGCTGTACCCCTGAAAATGTCGTTTCTTCTATCCCAACG
GCTCAGGCTTCCCTGTGCCTGCACCACTACGTTGACCCGGGCAACATCGA
GCACTCACCTTCGCAACCAAGAATGAGATGACAGACGAGGAGATTGAAAA
GCGAGCGGGCATGATTCAACTATTGCACGTGCAAGGATTGGGCACGAAGG
CCATGCACAAGGCTCTTCAGGACAACGGGTGGAGACTTGGGATTGAAGGA
ATGCAGAAGGTGCGTGAGTGAAGATTGAGACCCGACGTAACACGCTGTGG
CTCTGATCGACGTGGAGGTACGGAGTTCACACCAAAGCGGTACTCCCCTC
GAAGACGTCGTAATGCGCGTCATGATGTCAGCACGTTGTTGGGTCGCTTG
GTGCCATCAACTCAGCGATTAATTCGCCGTGTTCCCTTCGCCGGGCGCTG
TTCGTACCTTCGCCGTAGGTGAGAAGCGTCAGGGCGCGCTTGGAGAAACA
AAGGCTCGAGGACGCGGGAGGTGCGAACGACGCCGAGCAGTTACTGGAGC
GCCTCCAGCTGGAAGGTTGTTGGATGAGGTTCGCACTAGACGAGGCCGGG
CGCGTGAAGCGCATCGCTTGGGCGCTCGTCGAGCAGCAGAAGAATACACT
GCGGTACCATTCCGTCATCATCCAGGACAACACGTTCAACACGAACACGT
GAGTTTTTAACAGGGCTGCGCCCTTGAGATCTCTGCGACGTCCGGCCTGG
TTTGAGCATTCCCGCTCGAAGTGAAAGCGTCGCCCGCCTACAGCATTCTG
AATATCTTCCTCGTACCACGCGCACCCGATCTGTGACCAATTTGTTCGCG
GTTCTCCTTCCAGATACAAGTATCAGCTGGCGCTGATAGTCGTTGTGGAC
AAGGAGAACTACACCCAGATCGCGATGCAAGCCCTACTTTCACACGAGAG
GACGGAAGACTTTATTTTCCTTTTCCGGGTTTCCAGAGAGCTGTGCGGGG
GGGCGCAACCGCAGGTGAGCCAACCGTCCATGCTGCAGGGTACAAGTTGA
GCGCACGCAGTGGGACACATTGACACTCATGGACCGCACGAGACTCGTCG
ACCTCATTGCTCACCTGAGGAATTCGGTCGTTGTTGGCATGTTCGATTGC
CCACAACTACCGAATTCCTCAGGTGAGCAATGAGGTCGACGAGTCTCGTG
CGGTCCATGAGTGTCAATGTGTCCCACTGCGTGCGGTACCCCTGCAACAT
GGACGGTTGGCTCACCTGCGGTTGCGCCCCCCCGCACAGCCCTCTGGAAA
CCCGGAAAAGGAAAATAAAGTCTTCCGTCCTCTCGTGTGAAAGTAGGGCT
TGCATCGCGATCTGGGTGTAGTTCTCCTTGTCCACAACGACTATCAGCGC
CAGCTGATACTTGTATCTGGAACGGGAACCGCGAACAAATTGGTCACAGA
TCGGGTGCGCGTGGTACGAGGAAGATATTCAGAATGCTGTAGGCGGGCGA
CGCTTTCACTTCGAGCGGGAATGCTCAAACCAGGCCGGACGTCGCAGAGA
TCTCAAGGGCGCAGCCCTGTTAAAAACTCACGTGTTCGTGTTGAACGTGT
TGTCCTGGATGATGACGGAATGGTACCGCAGTGTATTCTCCTGCTGCTCG
ACGAGCGCCCAAGCGATGCGCTTCACGCGCCCGGCCTCGTCTAGTGCGAA
CCTCATCCAACAACCTTCCAGCTGGAGGCGCTCCAGTAACTGCTCGGCGT
CGTTCGCACTTCCCGCGTCCTCGAGCCTTTGTTTCTCCAAGCGCGCCCTG
ACGCTTCTCACCTACGGCGAAGGTACGAACAGCGCCCGGCGAAGGGAACA
CGGCGAATTAATCGCTGAGTTGATGGCACCAAGCGACCCAACAACGTGCT
GACATCATAACGCGCATTACGAGAGCGACCAAACGAGGACGTCTTCCAGA
GGAGTACCGCTTTGGTGTGAACTCCGTACCTCCACGTCGATCAGAGCCAC
AGCGTGTTACGTCGGGTCTCAATCTTCACTCACGCACCTTCTGCTTTCCT
TCAATCCCAAGTCGCTGGCTTTGGTTCGCGATGACGTTTACCATTTACCA
TCCTTGTTCACATCACCCCCCGTTGTTGCAGAGTTGATCGCACGGAGCCC
CCATGTTAACTTTGGTGTGTTTCAAACTTCTTGCCTTGCTTGCGTTGTCC
ATCGCAACCCGTCACCAACAACGTGTGCTCTGGTCTGTTGGCAGTGTTCT
TGTCGAAGCTTGTTGTACGTTGTCGAGCTGGCGCTGGAAAAGGAAGATGA
CACCACACCGCCGTATCGAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:1750314..1754636+

>mRNA_Ecto-sp6_S_contig8.17109.1 ID=mRNA_Ecto-sp6_S_contig8.17109.1|Name=mRNA_Ecto-sp6_S_contig8.17109.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1750314..1754636+ (Ectocarpus species6 EcLAC_371)
AGGAAGGGTATCGCAGCAGCACGCGCTGACACGAGATACCCGAGGCACGG
CCTCTTCAGGCACGCTCAGAGCACCACCCGTTGGTGCGGAGGACACTACT
ACACTGTTTGCCTCTCCGCCGATAGCACCGTCACCAGCATTGAGGCTGCC
GCCACCCCGCGAGGCATGGCGCAGAGAGGAGACTCAGAGGCCCATGGTCA
GGGGGGTGAAGAGGCTATGATCATGGACGATGAGGCACCTGCTTACAACG
CCGGCCTACTTCGCGACACCACCGCCGCCTCGCCCGCAGCTCCAAGCACT
GTTGCTAGAGTTTCTCCACAAAACCGCCAAGTCCAGTTCAGCAGATCTGA
AGCGGAGATGTTGCGGATGAAGGAGGAACTCCTCAACCTGGAGCTCCCCC
GCATTGACGATGGAGCGGAGGAAGAATCCGGCGAGGCAACATGGAGAAAC
GCCTGCGAAATGGTGAAAGGGGTCGTAGGGTACGACGGGTACAGGCTACA
ACGGCGAAACAAATTGAAGCTCTACTCTGGAACCGCCGCTGGAAATCGGC
CGCTAAGGAACAGGTGGAGAACCGTCCTCATCGTTTGCGATCAAGGTGGA
AAACCAGACAGGCGGAGCCGTGTCGTCCAGAACTCGCCCAAGGACACTAC
ATCGAAGAAGTTGGGCTGCAAGTTTCAGGTGATGCTGAACTGGCCAGCAC
AAAAACAAGCTCCTGTCATTTCGACGGCGTGTTCTTGTCGAAGCTTGTTG
TACGTTGTCGAGCTGGCGCTGGAAAAGGAAGATGACACCACACCGCCGTA
TCGAGGC
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