mRNA_Ecto-sp6_S_contig8.17031.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17031.1
Unique NamemRNA_Ecto-sp6_S_contig8.17031.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig8.17031.1 vs. uniprot
Match: D7FYX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX4_ECTSI)

HSP 1 Score: 551 bits (1421), Expect = 4.680e-196
Identity = 313/337 (92.88%), Postives = 316/337 (93.77%), Query Frame = 1 
Query:    1 SVVVEVLILYGAALSAVKAFFPRSPSDENIHRKTTRPRPRSVVNRQERALVVWNPPANAAVVGAESHALPPAREXXXXXXXXXTDLKFALGAGTSRYLRTLVFPSSGAANPFSRQTPISEITGLRMATHAHRPTPVVLLLGASQPSSWCPVRLATERCPLPIAPANSARCGEEDEELPTAAAQPVTGASIVANVVGQLGIDLVFPAVGMAVSAHAGRRAAACSSSVLRSLENSRCDATAAVAGQQPRQSSAGSRGRTSATGERRTRNSSRSXSPSPPRRSRGRPQSPWRSASPAPHPVAVGVFPYRPVAPSSPLAMENSAADDDLCAVSAMTTSPLI 1011
            SVVVEVL+LYGAALSAVKAFFPRSPSDENIHRKTTRPRPRSVVNRQERALVVWNPPANAAVVGAESHALPPAREXXXXXXXXXTDL F LGAGTSRYLRTLVFPSSGAANPF RQTPISEITGLRMATHAHRPTP VLLLGASQP  WCPVRLATERCPLPIAPANSA CGEED+ELPTAAAQPVTGASIVANVVGQLGIDLVFPAVG+AVSA AGRRAAA SSSV RSLENSRCDATAAVAGQQP  SS GSRGRTSATGERRTR SSRS SPS P RSRGRPQSP RS SPAP PVAVGVFPYRPVAPSSPLAMENSA DDDLCAVSAMTTSPLI
Sbjct:    2 SVVVEVLLLYGAALSAVKAFFPRSPSDENIHRKTTRPRPRSVVNRQERALVVWNPPANAAVVGAESHALPPAREXXXXXXXXXTDLMFPLGAGTSRYLRTLVFPSSGAANPFPRQTPISEITGLRMATHAHRPTPAVLLLGASQPFPWCPVRLATERCPLPIAPANSASCGEEDKELPTAAAQPVTGASIVANVVGQLGIDLVFPAVGIAVSARAGRRAAAFSSSVFRSLENSRCDATAAVAGQQPHHSSTGSRGRTSATGERRTRKSSRSRSPSLPPRSRGRPQSPLRSVSPAPRPVAVGVFPYRPVAPSSPLAMENSAVDDDLCAVSAMTTSPLI 338
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BLAST of mRNA_Ecto-sp6_S_contig8.17031.1 vs. uniprot
Match: A0A6H5K0H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H3_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 6.160e-88
Identity = 183/295 (62.03%), Postives = 199/295 (67.46%), Query Frame = 1 
Query:   67 RSPSDENIHRKTTRPRPRSVVNRQERALVVWNPPANAAVVGAESHALPPAREXXXXXXXXXTDLKFALGAGTSRYLRTLVFPSSGAANPFSRQTPISEITGLRMATHAHRPTPVVLLLGASQPSSWCPVRLATERCPLPIAPANSARCGEEDEELPTAAAQPVTGASIVANVVGQLGIDLVFPAVGMAVSAHAGRRAAACSSSVLRSLENSRCDATAAVAGQQPRQSSAGSRGRTSATGERRTRNSSRSXSPSPPRRSRGRPQSPWRSASPAPHPVAVGVFPYRPVAPSSPLAME 951
            RS +DEN+HRKTTRPRPR+V  +QERALVVW PPA+AA VGAES AL PAR XXXXXXXXX                         ++  SR    S+        H+H PTP +L+LG SQPS W PV LATERCPLPIAPANSA CGE ++E P  AA PVTG SIV NVVGQLG+D VFPA+GMAV                      RCDATAAVAGQQP  SSAGSRGRTS TGERRTRNSSR  SPSPP RSRGRPQSP RS+SPA  PVAV VFPYRPVA S PLAME
Sbjct:   11 RSATDENVHRKTTRPRPRNVAKQQERALVVWTPPAHAADVGAESPALVPARXXXXXXXXXXN-----------------------RSHVRSRCRHFSD-------GHSHWPTPALLVLGTSQPSLWYPVSLATERCPLPIAPANSASCGEAEDEPPMEAAPPVTGVSIVPNVVGQLGVDFVFPAIGMAV----------------------RCDATAAVAGQQPHHSSAGSRGRTSVTGERRTRNSSRPRSPSPPPRSRGRPQSPLRSSSPATRPVAVRVFPYRPVASSRPLAME 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYX4_ECTSI4.680e-19692.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0H3_9PHAE6.160e-8862.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:965450..967456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1043
Hectar predicted targeting categorychloroplast
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002840.1
Cds size1041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350411.4227684-CDS-Ecto-sp6_S_contig8:965451..9655411682350411.4227684-CDS-Ecto-sp6_S_contig8:965451..965541Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 965452..965541 -
1682350411.4444375-CDS-Ecto-sp6_S_contig8:965936..9668191682350411.4444375-CDS-Ecto-sp6_S_contig8:965936..966819Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 965937..966819 -
1682350411.4564636-CDS-Ecto-sp6_S_contig8:967388..9674561682350411.4564636-CDS-Ecto-sp6_S_contig8:967388..967456Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 967389..967456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17031.1prot_Ecto-sp6_S_contig8.17031.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 965452..967456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17031.1

>prot_Ecto-sp6_S_contig8.17031.1 ID=prot_Ecto-sp6_S_contig8.17031.1|Name=mRNA_Ecto-sp6_S_contig8.17031.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=347bp
SVVVEVLILYGAALSAVKAFFPRSPSDENIHRKTTRPRPRSVVNRQERAL
VVWNPPANAAVVGAESHALPPARETALVAWSPPTDLKFALGAGTSRYLRT
LVFPSSGAANPFSRQTPISEITGLRMATHAHRPTPVVLLLGASQPSSWCP
VRLATERCPLPIAPANSARCGEEDEELPTAAAQPVTGASIVANVVGQLGI
DLVFPAVGMAVSAHAGRRAAACSSSVLRSLENSRCDATAAVAGQQPRQSS
AGSRGRTSATGERRTRNSSRSRSPSPPRRSRGRPQSPWRSASPAPHPVAV
GVFPYRPVAPSSPLAMENSAADDDLCAVSAMTTSPLIPPSATWPVTG
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mRNA from alignment at Ecto-sp6_S_contig8:965450..967456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17031.1 ID=mRNA_Ecto-sp6_S_contig8.17031.1|Name=mRNA_Ecto-sp6_S_contig8.17031.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2007bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:965450..967456- (Ectocarpus species6 EcLAC_371)
TCCGTCGTTGTCGAGGTGCTGATCCTGTACGGCGCGGCACTATCGGCAGT
GAAGGCGTTCTTCCCAAGGTGCGACCGCGAATGTTCGGTTTGATCACTGT
TCCGGTGACACACAGACATCGCCCGATCTCCGCCCATCAAACATTTTGTT
GCGTTTTTTTTAGTTTAACCTTGGGTTATTATATTGAGTTCTAGAAGGAC
ACGTTAACAAGTGGGAAAACGCGTTGACATCACACAGAAAGCCTATGTGG
ACCACCTATTCGAGAAAACTCCAACCTACACTTGTGTACCCACCAAACAC
CACGTTGATGCGTTTCACCTTAATGTGTAGTAGGGGCACCGAGCAGGGAT
GGATAAATCTCGCTCAAAGTACATACCAAGACCTTGTACTCTACATTACC
ACCGGGTCATTTGTGGCATCATCCGATCGAAACATGGCAGCTTTTCCCGG
TCCTACTTGGAATCACTGCCCGATCCGGATGGCCAACGTGCACGCTCTTG
TCATAGACGTCCCGCTGAACCCTCTTCTTGCACGCGCAACTCACCGCCGA
GCGTCGGCAGAAAAGTGTTTTCATCGACACAAAATGCCAGGTTTCACTTA
CACCAAACATGCTCCCTCTCCCCCATCTTGTCGACAGGAGTCCGTCGGAC
GAGAACATCCATCGAAAGACCACGCGGCCAAGACCGAGAAGCGTCGTCAA
TCGGCAGGAACGGGCCTTGGTTGTCTGGAATCCACCGGCCAACGCCGCAG
TCGTTGGCGCGGAATCCCACGCTCTGCCCCCTGCTCGAGAAACAGCACTT
GTTGCATGGTCGCCACCAACCGATCTCAAGTTCGCTCTCGGTGCCGGCAC
TTCTCGGTACCTTCGCACGTTGGTGTTTCCTTCGAGCGGTGCCGCAAACC
CTTTCTCCCGGCAAACACCGATCTCGGAAATCACTGGTCTTAGGATGGCC
ACCCACGCCCACCGGCCCACGCCCGTAGTGCTCCTGCTCGGCGCGTCGCA
GCCGTCGTCGTGGTGCCCGGTGCGCCTCGCCACTGAGAGGTGCCCCCTGC
CTATCGCGCCGGCGAATAGCGCACGCTGCGGCGAAGAAGACGAAGAGCTC
CCGACGGCAGCGGCGCAGCCCGTCACCGGTGCCAGCATCGTCGCCAACGT
GGTCGGTCAGCTGGGTATCGACCTCGTTTTCCCGGCGGTAGGCATGGCGG
TGTCTGCGCATGCTGGACGACGAGCTGCGGCATGCTCTTCTTCGGTGCTC
CGTTCTCTGGAGAACAGCCGATGCGATGCCACGGCAGCCGTCGCCGGACA
ACAGCCGCGCCAATCGAGCGCGGGGAGCAGGGGACGGACATCGGCAACGG
GAGAGCGAAGAACGAGGAACTCCTCGCGATCTCGGTCGCCTTCGCCGCCC
CGGCGATCACGAGGCCGGCCGCAATCTCCCTGGCGATCCGCATCTCCCGC
CCCGCACCCGGTGGCGGTAGGAGTCTTCCCCTACCGACCGGTCGCGCCGT
CCAGCCCTTTGGCGATGGAGGTCAGTCCTGAAGTATCGCTGGTGAAATCC
GCGCTACATAGCGTGTTATACCCTCGGTACGTAGTCGTACAATCGTGTTG
ATATCGGTGTACAAAATACCGAGAGAAAACCCTCTCCCAGCCAGGGCTGT
AGCAGCACCTCGCCTGACGCACGTTTGAGCCTATCGTGAGACTGTGCAAC
ATATTCTCGGGTTTTCGCTGACCGTTCTCAAACTGATCGAAACGAGCAGA
CTTCATATGCCGCCGAGACACCCGCCGAGTGGAAGGTGTGGTAGAGTTGA
CGATGTACACCACCTTACACCCCCTAGTTGCCACATACTGCACCAGCTAC
AGTACAAAATCGCCGACAAATTTGTTCCTGTCCACCTCGCCTCCGTTTTC
CCCCGTCTGGATCAGAACTCTGCTGCGGACGACGACCTCTGCGCGGTTTC
TGCGATGACGACGTCTCCCCTCATTCCGCCCTCAGCTACCTGGCCTGTTA
CCGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:965450..967456-

>mRNA_Ecto-sp6_S_contig8.17031.1 ID=mRNA_Ecto-sp6_S_contig8.17031.1|Name=mRNA_Ecto-sp6_S_contig8.17031.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:965450..967456- (Ectocarpus species6 EcLAC_371)
TCCGTCGTTGTCGAGGTGCTGATCCTGTACGGCGCGGCACTATCGGCAGT
GAAGGCGTTCTTCCCAAGGAGTCCGTCGGACGAGAACATCCATCGAAAGA
CCACGCGGCCAAGACCGAGAAGCGTCGTCAATCGGCAGGAACGGGCCTTG
GTTGTCTGGAATCCACCGGCCAACGCCGCAGTCGTTGGCGCGGAATCCCA
CGCTCTGCCCCCTGCTCGAGAAACAGCACTTGTTGCATGGTCGCCACCAA
CCGATCTCAAGTTCGCTCTCGGTGCCGGCACTTCTCGGTACCTTCGCACG
TTGGTGTTTCCTTCGAGCGGTGCCGCAAACCCTTTCTCCCGGCAAACACC
GATCTCGGAAATCACTGGTCTTAGGATGGCCACCCACGCCCACCGGCCCA
CGCCCGTAGTGCTCCTGCTCGGCGCGTCGCAGCCGTCGTCGTGGTGCCCG
GTGCGCCTCGCCACTGAGAGGTGCCCCCTGCCTATCGCGCCGGCGAATAG
CGCACGCTGCGGCGAAGAAGACGAAGAGCTCCCGACGGCAGCGGCGCAGC
CCGTCACCGGTGCCAGCATCGTCGCCAACGTGGTCGGTCAGCTGGGTATC
GACCTCGTTTTCCCGGCGGTAGGCATGGCGGTGTCTGCGCATGCTGGACG
ACGAGCTGCGGCATGCTCTTCTTCGGTGCTCCGTTCTCTGGAGAACAGCC
GATGCGATGCCACGGCAGCCGTCGCCGGACAACAGCCGCGCCAATCGAGC
GCGGGGAGCAGGGGACGGACATCGGCAACGGGAGAGCGAAGAACGAGGAA
CTCCTCGCGATCTCGGTCGCCTTCGCCGCCCCGGCGATCACGAGGCCGGC
CGCAATCTCCCTGGCGATCCGCATCTCCCGCCCCGCACCCGGTGGCGGTA
GGAGTCTTCCCCTACCGACCGGTCGCGCCGTCCAGCCCTTTGGCGATGGA
GAACTCTGCTGCGGACGACGACCTCTGCGCGGTTTCTGCGATGACGACGT
CTCCCCTCATTCCGCCCTCAGCTACCTGGCCTGTTACCGGT
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