mRNA_Ecto-sp6_S_contig8.17030.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17030.1
Unique NamemRNA_Ecto-sp6_S_contig8.17030.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:939488..940332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size471
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_002820.1
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350411.3563695-UTR-Ecto-sp6_S_contig8:939487..9397151682350411.3563695-UTR-Ecto-sp6_S_contig8:939487..939715Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 939488..939715 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350411.366086-CDS-Ecto-sp6_S_contig8:939715..9398831682350411.366086-CDS-Ecto-sp6_S_contig8:939715..939883Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 939716..939883 -
1682350411.3751652-CDS-Ecto-sp6_S_contig8:940257..9403321682350411.3751652-CDS-Ecto-sp6_S_contig8:940257..940332Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 940258..940332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17030.1prot_Ecto-sp6_S_contig8.17030.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 939716..940332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17030.1

>prot_Ecto-sp6_S_contig8.17030.1 ID=prot_Ecto-sp6_S_contig8.17030.1|Name=mRNA_Ecto-sp6_S_contig8.17030.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=81bp
MAAPMVVSSVLSPEPAASTTAELLELPQTIFPEEWDLVDVRETLSVSSDA
FPGVTNPEPHGALEERQDNPFGISAEMFGL*
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mRNA from alignment at Ecto-sp6_S_contig8:939488..940332-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17030.1 ID=mRNA_Ecto-sp6_S_contig8.17030.1|Name=mRNA_Ecto-sp6_S_contig8.17030.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=845bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:939488..940332- (Ectocarpus species6 EcLAC_371)
ATGGCGGCACCCATGGTGGTTTCCTCGGTGCTGAGTCCCGAGCCGGCTGC
GAGCACAACGGCGGAACTCCTGGAGGTAAACGGGTGCGCGTGTAGCGTAC
GGTCTGATCTGAGGGTCGCTGCCTGAAGTGAGGACACCTTCGATGCTTCG
TGGCGTGTTTGCGTTGCTGTTGACTTGCGAGGTCTTCAAAGCCGTCGAGG
CGGGACTGTCAGGTTCAGCATTGAGCGGGACTTCTCTCGTGTGTATGTTT
TGTTGGTGCCTCGAAACAACCGACGCATGGTGATTGGAGGCATAACTAGA
CCATGGCGATGTCGTGAAGACACGCTCGTGTGCAGCTGTTCCCGTTTTCC
ACCCGTTTCTCCCCCGTGTTGCTCTGCGTTTCGATACCACACTCAACCCA
GCTCATCCCTCAATCGGCAAACTCTGTTGGACGTGATCTATTTTGGCAGC
TCCCCCAGACCATCTTTCCCGAGGAATGGGACCTCGTCGATGTAAGGGAA
ACGCTGTCGGTATCTTCCGATGCTTTCCCAGGTGTCACGAACCCTGAACC
CCATGGAGCCTTAGAGGAGAGGCAGGACAACCCTTTCGGCATCTCGGCGG
AGATGTTCGGGCTATGATCGGGGGAGATCCTCGATTGGGACTCCACCGCT
TCTTCTCCACCGCGATGCCTGCCCCGCCGCTTTCACCACCACCACCAGCG
ATATGGCCATCACTGCTGTGGCTTTTCCCGATGGGACAAGGCACCGCTCC
ACTGGAAATCCGTTTTCTGGTGTGAACGTCAGTTTAAATAGTGGGCCGCG
CACATATCCTTTGGGCGCTGTGTCAGTGAGGGGCAGTGGCGTTCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:939488..940332-

>mRNA_Ecto-sp6_S_contig8.17030.1 ID=mRNA_Ecto-sp6_S_contig8.17030.1|Name=mRNA_Ecto-sp6_S_contig8.17030.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:939488..940332- (Ectocarpus species6 EcLAC_371)
ATGGCGGCACCCATGGTGGTTTCCTCGGTGCTGAGTCCCGAGCCGGCTGC
GAGCACAACGGCGGAACTCCTGGAGCTCCCCCAGACCATCTTTCCCGAGG
AATGGGACCTCGTCGATGTAAGGGAAACGCTGTCGGTATCTTCCGATGCT
TTCCCAGGTGTCACGAACCCTGAACCCCATGGAGCCTTAGAGGAGAGGCA
GGACAACCCTTTCGGCATCTCGGCGGAGATGTTCGGGCTATGA
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